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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8023H09.5
        

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:6731148-6731382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr1:53308419-53308251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
16, 9
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr1:14206180-14205961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr1:89509951-89509713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
89, 59
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr1:98576020-98576186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
5-145
               

               
Cow position:
               
chr1:12978653-12978793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
5-177
               

               
Cow position:
               
chr1:37886835-37886669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
5-177
               

               
Cow position:
               
chr1:52912923-52912755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr1:2462354-2462572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr1:33998730-33998950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr1:40600016-40600227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr1:55229948-55230176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
154, 57
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr1:68863008-68863222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr1:89388311-89388546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr1:92590169-92590393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
5-245
               

               
Cow position:
               
chr1:22035585-22035828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
134, 11
               

               
Conread position:
               
6-150
               

               
Cow position:
               
chr1:80900093-80900235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
6-163
               

               
Cow position:
               
chr1:100800326-100800480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
6-164
               

               
Cow position:
               
chr1:67688610-67688453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
6-164
               

               
Cow position:
               
chr1:80584403-80584559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
6-166
               

               
Cow position:
               
chr1:42537349-42537190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
6-184
               

               
Cow position:
               
chr1:52039611-52039786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
6-224
               

               
Cow position:
               
chr1:35671515-35671737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
178, 54
               

               
Conread position:
               
6-224
               

               
Cow position:
               
chr1:49980682-49980909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
6-225
               

               
Cow position:
               
chr1:21787310-21787526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
177, 10
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr1:197033-196803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr1:35162383-35162608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
180, 56
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr1:73960675-73960889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
6-231
               

               
Cow position:
               
chr1:61884886-61885120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
141, 56
               

               
Conread position:
               
6-231
               

               
Cow position:
               
chr1:98911982-98912216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
148, 10
               

               
Conread position:
               
6-251
               

               
Cow position:
               
chr1:72011839-72011592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
173, 9
               

               
Conread position:
               
6-258
               

               
Cow position:
               
chr1:83072413-83072675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
6-266
               

               
Cow position:
               
chr1:48214181-48213902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
152, 9
               

               
Conread position:
               
7-145
               

               
Cow position:
               
chr1:44125663-44125527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
7-185
               

               
Cow position:
               
chr1:102266293-102266116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
151, 9
               

               
Conread position:
               
7-224
               

               
Cow position:
               
chr1:53520886-53521106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 9
               

               
Conread position:
               
7-250
               

               
Cow position:
               
chr1:81290481-81290731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
176, 55
               

               
Conread position:
               
7-268
               

               
Cow position:
               
chr1:81569055-81568785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
8-181
               

               
Cow position:
               
chr1:92197430-92197600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
8-269
               

               
Cow position:
               
chr1:102306164-102305904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
152, 8
               

               
Conread position:
               
9-138
               

               
Cow position:
               
chr1:81563722-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
9-141
               

               
Cow position:
               
chr1:81355728-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
9-144
               

               
Cow position:
               
chr1:4581353-4581220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
9-145
               

               
Cow position:
               
chr1:6752258-6752120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 57
               

               
Conread position:
               
9-145
               

               
Cow position:
               
chr1:83618631-83618493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
9-149
               

               
Cow position:
               
chr1:95215214-95215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
9-162
               

               
Cow position:
               
chr1:71916142-71915992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-163
               

               
Cow position:
               
chr1:5135733-5135580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
9-167
               

               
Cow position:
               
chr1:95072308-95072465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
9-170
               

               
Cow position:
               
chr1:92369713-92369870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
9-172
               

               
Cow position:
               
chr1:84768902-84768741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
9-174
               

               
Cow position:
               
chr1:48730854-48730693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
9-174
               

               
Cow position:
               
chr1:93554813-93554976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-174
               

               
Cow position:
               
chr1:96081457-96081618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-175
               

               
Cow position:
               
chr1:27380437-27380597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-176
               

               
Cow position:
               
chr1:5580036-5580197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
9-176
               

               
Cow position:
               
chr1:81613366-81613532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
155, 9
               

               
Conread position:
               
9-177
               

               
Cow position:
               
chr1:49153297-49153459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
9-177
               

               
Cow position:
               
chr1:50991910-50992075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-177
               

               
Cow position:
               
chr1:81580154-81580320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
9-177
               

               
Cow position:
               
chr1:90868464-90868304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-177
               

               
Cow position:
               
chr1:92684718-92684547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
9-179
               

               
Cow position:
               
chr1:67529032-67529200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-179
               

               
Cow position:
               
chr1:99642391-99642225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
9-180
               

               
Cow position:
               
chr1:85550101-85549932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 7
               

               
Conread position:
               
9-191
               

               
Cow position:
               
chr1:99221375-99221199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
9-192
               

               
Cow position:
               
chr1:80442720-80442904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
9-210
               

               
Cow position:
               
chr1:43389070-43388867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
169, 7
               

               
Conread position:
               
9-214
               

               
Cow position:
               
chr1:24534279-24534079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 54
               

               
Conread position:
               
9-219
               

               
Cow position:
               
chr1:26895835-26895616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
9-220
               

               
Cow position:
               
chr1:81582090-81582292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chr1:24581554-24581766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chr1:56477569-56477784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
156, 7
               

               
Conread position:
               
9-223
               

               
Cow position:
               
chr1:68855142-68855366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
138, 28
               

               
Conread position:
               
9-224
               

               
Cow position:
               
chr1:5637082-5636871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
9-224
               

               
Cow position:
               
chr1:22729033-22729255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
168, 10
               

               
Conread position:
               
9-224
               

               
Cow position:
               
chr1:78838774-78838988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
154, 10
               

               
Conread position:
               
9-224
               

               
Cow position:
               
chr1:82337799-82337579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
141, 7
               

               
Conread position:
               
9-224
               

               
Cow position:
               
chr1:102648254-102648481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
155, 53
               

               
Conread position:
               
9-225
               

               
Cow position:
               
chr1:43352677-43352451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
169, 7
               

               
Conread position:
               
9-225
               

               
Cow position:
               
chr1:55428980-55428751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 7
               

               
Conread position:
               
9-225
               

               
Cow position:
               
chr1:97611685-97611471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr1:12464687-12464462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
141, 7
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr1:20000772-20000553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
149, 53
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr1:20104241-20104469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr1:34159810-34160031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr1:54156758-54156531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr1:59518899-59519114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
176, 7
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr1:62964242-62964471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr1:65028511-65028723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
174, 7
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr1:70538588-70538809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
177, 14
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr1:39427029-39426813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
136, 53
               

               
Conread position:
               
9-228
               

               
Cow position:
               
chr1:97833689-97833902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
177, 7
               

               
Conread position:
               
9-229
               

               
Cow position:
               
chr1:27463111-27463334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr1:43286323-43286537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
180, 9
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr1:45575911-45576128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
145, 7
               

               
Conread position:
               
9-234
               

               
Cow position:
               
chr1:72813593-72813830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
155, 24
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr1:37322021-37321793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
9-240
               

               
Cow position:
               
chr1:84811963-84811724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 58
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr1:30189127-30189374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr1:49825089-49824846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
9-242
               

               
Cow position:
               
chr1:54258544-54258787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
150, 7
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr1:52467280-52467508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
77, 53
               

               
Conread position:
               
9-249
               

               
Cow position:
               
chr1:19482104-19481875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chr1:38706877-38706622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
141, 7
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chr1:81477892-81477634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 10
               

               
Conread position:
               
9-256
               

               
Cow position:
               
chr1:72304411-72304169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
9-262
               

               
Cow position:
               
chr1:78811016-78811278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
143, 13
               

               
Conread position:
               
10-175
               

               
Cow position:
               
chr1:3882483-3882318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
10-247
               

               
Cow position:
               
chr1:54267961-54267715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
12-153
               

               
Cow position:
               
chr1:89349945-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
12-160
               

               
Cow position:
               
chr1:30418063-30417922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
12-172
               

               
Cow position:
               
chr1:81913172-81913017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
12-174
               

               
Cow position:
               
chr1:82884413-82884255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 6
               

               
Conread position:
               
12-175
               

               
Cow position:
               
chr1:76735499-76735340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
79, 58
               

               
Conread position:
               
12-177
               

               
Cow position:
               
chr1:186296-186138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
12-177
               

               
Cow position:
               
chr1:69264788-69264952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 42
               

               
Conread position:
               
12-177
               

               
Cow position:
               
chr1:98551698-98551862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
6, 51
               

               
Conread position:
               
12-179
               

               
Cow position:
               
chr1:93043999-93044162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
12-181
               

               
Cow position:
               
chr1:61741989-61741821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
12-181
               

               
Cow position:
               
chr1:79003954-79004118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
6, 51
               

               
Conread position:
               
12-185
               

               
Cow position:
               
chr1:64302266-64302095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
12-185
               

               
Cow position:
               
chr1:78096905-78097080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
12-213
               

               
Cow position:
               
chr1:816431-816232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr1:41027053-41027273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 52
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr1:54206836-54206618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr1:56618672-56618455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
6, 51
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr1:74082002-74081800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr1:78794252-78794035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
171, 50
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr1:95618621-95618842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
142, 59
               

               
Conread position:
               
12-226
               

               
Cow position:
               
chr1:25281679-25281474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
12-226
               

               
Cow position:
               
chr1:43505509-43505727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
95, 10
               

               
Conread position:
               
12-226
               

               
Cow position:
               
chr1:75744840-75745063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
12-229
               

               
Cow position:
               
chr1:63078988-63079207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
12-231
               

               
Cow position:
               
chr1:81481404-81481178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
12-240
               

               
Cow position:
               
chr1:41056657-41056896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
80, 50
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr1:79640310-79640072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
6, 52
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chr1:5597230-5596992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
7, 40
               

               
Conread position:
               
12-244
               

               
Cow position:
               
chr1:101507338-101507571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
12-245
               

               
Cow position:
               
chr1:64678674-64678898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
157, 51
               

               
Conread position:
               
12-247
               

               
Cow position:
               
chr1:48206553-48206317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
6, 51
               

               
Conread position:
               
12-248
               

               
Cow position:
               
chr1:53452516-53452746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
173, 49
               

               
Conread position:
               
12-250
               

               
Cow position:
               
chr1:91023487-91023242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
12-256
               

               
Cow position:
               
chr1:86682581-86682334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr1:22827137-22827385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
79, 10
               

               
Conread position:
               
12-266
               

               
Cow position:
               
chr1:78857351-78857080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
13-144
               

               
Cow position:
               
chr1:89230250-89230121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 50
               

               
Conread position:
               
13-153
               

               
Cow position:
               
chr1:31855266-31855128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
13-172
               

               
Cow position:
               
chr1:19962033-19962188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
13-252
               

               
Cow position:
               
chr1:36688397-36688155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
79, 6
               

               
Conread position:
               
14-163
               

               
Cow position:
               
chr1:85647800-85647653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
14-172
               

               
Cow position:
               
chr1:78697790-78697635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
14-176
               

               
Cow position:
               
chr1:72068855-72068692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
14-185
               

               
Cow position:
               
chr1:6958853-6959033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
14-185
               

               
Cow position:
               
chr1:11729156-11729325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
14-198
               

               
Cow position:
               
chr1:39510077-39509894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
14-216
               

               
Cow position:
               
chr1:6941440-6941659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 79
               

               
Conread position:
               
14-220
               

               
Cow position:
               
chr1:95176919-95177115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
14-222
               

               
Cow position:
               
chr1:500155-500375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
14-226
               

               
Cow position:
               
chr1:68127210-68126987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
14-241
               

               
Cow position:
               
chr1:70175559-70175323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 57
               

               
Conread position:
               
14-243
               

               
Cow position:
               
chr1:56225449-56225686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr1:69678347-69678104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
14-245
               

               
Cow position:
               
chr1:100450193-100449971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
12, 6
               

               
Conread position:
               
14-246
               

               
Cow position:
               
chr1:97303269-97303032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
6, 50
               

               
Conread position:
               
14-247
               

               
Cow position:
               
chr1:52662192-52661956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
6, 31
               

               
Conread position:
               
14-275
               

               
Cow position:
               
chr1:67654340-67654075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
15-167
               

               
Cow position:
               
chr1:69481966-69481817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
15-175
               

               
Cow position:
               
chr1:48769784-48769944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
138, 55
               

               
Conread position:
               
15-175
               

               
Cow position:
               
chr1:68253575-68253736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
51, 46
               

               
Conread position:
               
15-177
               

               
Cow position:
               
chr1:33775661-33775501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 47
               

               
Conread position:
               
15-177
               

               
Cow position:
               
chr1:52995006-52995169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
98, 47
               

               
Conread position:
               
15-177
               

               
Cow position:
               
chr1:57090960-57091121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
15-177
               

               
Cow position:
               
chr1:83747925-83748084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
15-181
               

               
Cow position:
               
chr1:3965818-3965978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
15-181
               

               
Cow position:
               
chr1:53458680-53458842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
143, 48
               

               
Conread position:
               
15-184
               

               
Cow position:
               
chr1:73719443-73719608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
15-185
               

               
Cow position:
               
chr1:100762059-100762228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 48
               

               
Conread position:
               
15-211
               

               
Cow position:
               
chr1:98030905-98031103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
143, 47
               

               
Conread position:
               
15-214
               

               
Cow position:
               
chr1:17196645-17196434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
143, 48
               

               
Conread position:
               
15-216
               

               
Cow position:
               
chr1:62034846-62034642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
159, 46
               

               
Conread position:
               
15-220
               

               
Cow position:
               
chr1:68618949-68618743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
153, 22
               

               
Conread position:
               
15-222
               

               
Cow position:
               
chr1:8287648-8287431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
161, 46
               

               
Conread position:
               
15-224
               

               
Cow position:
               
chr1:3923818-3923603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
171, 52
               

               
Conread position:
               
15-224
               

               
Cow position:
               
chr1:27959568-27959346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
130, 47
               

               
Conread position:
               
15-224
               

               
Cow position:
               
chr1:73721342-73721565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
15-224
               

               
Cow position:
               
chr1:91066169-91065956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
172, 47
               

               
Conread position:
               
15-226
               

               
Cow position:
               
chr1:1956351-1956135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
145, 47
               

               
Conread position:
               
15-226
               

               
Cow position:
               
chr1:7739930-7740146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
162, 47
               

               
Conread position:
               
15-231
               

               
Cow position:
               
chr1:97954486-97954275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
15-243
               

               
Cow position:
               
chr1:7971393-7971622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 46
               

               
Conread position:
               
15-243
               

               
Cow position:
               
chr1:90621524-90621286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
15-244
               

               
Cow position:
               
chr1:50930993-50930755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
159, 38
               

               
Conread position:
               
15-245
               

               
Cow position:
               
chr1:82936615-82936384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
151, 48
               

               
Conread position:
               
16-141
               

               
Cow position:
               
chr1:19227074-19226950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
16-144
               

               
Cow position:
               
chr1:88652614-88652746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
16-149
               

               
Cow position:
               
chr1:37309536-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-162
               

               
Cow position:
               
chr1:83582950-83582805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
16-163
               

               
Cow position:
               
chr1:18780351-18780200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
16-163
               

               
Cow position:
               
chr1:45478876-45478734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 49
               

               
Conread position:
               
16-163
               

               
Cow position:
               
chr1:95974383-95974528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
16-168
               

               
Cow position:
               
chr1:40935784-40935632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
120, 45
               

               
Conread position:
               
16-169
               

               
Cow position:
               
chr1:7023104-7023256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
16-172
               

               
Cow position:
               
chr1:13637680-13637526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
16-172
               

               
Cow position:
               
chr1:89342003-89341842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
16-174
               

               
Cow position:
               
chr1:34771520-34771363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
16-174
               

               
Cow position:
               
chr1:53622941-53623092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-176
               

               
Cow position:
               
chr1:48105447-48105294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
16-176
               

               
Cow position:
               
chr1:49433281-49433122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:808838-808675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:8670756-8670917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
135, 46
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:10716481-10716639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:39068973-39068813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:45553257-45553098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
142, 47
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:68672614-68672459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:71253570-71253413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:85162564-85162402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:86912423-86912583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
141, 47
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:98511910-98512069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr1:101177498-101177658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
16-182
               

               
Cow position:
               
chr1:80841629-80841794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-184
               

               
Cow position:
               
chr1:36875013-36875174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-184
               

               
Cow position:
               
chr1:47233495-47233329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
16-209
               

               
Cow position:
               
chr1:71078977-71078776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
158, 47
               

               
Conread position:
               
16-215
               

               
Cow position:
               
chr1:83025181-83024973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
111, 46
               

               
Conread position:
               
16-216
               

               
Cow position:
               
chr1:58754811-58754605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 46
               

               
Conread position:
               
16-216
               

               
Cow position:
               
chr1:64113808-64113607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
16-217
               

               
Cow position:
               
chr1:97090309-97090511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
143, 46
               

               
Conread position:
               
16-222
               

               
Cow position:
               
chr1:98360413-98360214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
190, 51
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:10778546-10778755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
173, 46
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:20667759-20667549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
173, 51
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:30983509-30983291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:74956034-74955831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
157, 46
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:79165099-79164881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 46
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:82880629-82880832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
153, 46
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:89448883-89449099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
142, 46
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:100551953-100552167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr1:101632354-101632151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-225
               

               
Cow position:
               
chr1:10633029-10633242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
169, 46
               

               
Conread position:
               
16-225
               

               
Cow position:
               
chr1:70828886-70829098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
51, 88
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr1:15102872-15103087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
160, 32
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr1:22823888-22824112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
143, 46
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr1:61012296-61012509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
127, 51
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr1:62235463-62235253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr1:64572498-64572717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
129, 54
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr1:69539674-69539888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 46
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr1:69695009-69694804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr1:70434982-70435189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
163, 41
               

               
Conread position:
               
16-231
               

               
Cow position:
               
chr1:42873969-42873769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
16-232
               

               
Cow position:
               
chr1:8128984-8128769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
149, 6
               

               
Conread position:
               
16-235
               

               
Cow position:
               
chr1:54478312-54478528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
16-241
               

               
Cow position:
               
chr1:81858919-81858683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
16-244
               

               
Cow position:
               
chr1:87197803-87198049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
149, 46
               

               
Conread position:
               
16-247
               

               
Cow position:
               
chr1:86110754-86110520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
16-248
               

               
Cow position:
               
chr1:42887294-42887060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 47
               

               
Conread position:
               
16-248
               

               
Cow position:
               
chr1:51445871-51446109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
139, 30
               

               
Conread position:
               
16-249
               

               
Cow position:
               
chr1:71295313-71295078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 147
               

               
Conread position:
               
16-254
               

               
Cow position:
               
chr1:55705263-55705013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
16-255
               

               
Cow position:
               
chr1:42175705-42175957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
16-257
               

               
Cow position:
               
chr1:55753232-55752985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
169, 38
               

               
Conread position:
               
17-147
               

               
Cow position:
               
chr1:38401782-38401912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 45
               

               
Conread position:
               
17-167
               

               
Cow position:
               
chr1:91874928-91874784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
17-170
               

               
Cow position:
               
chr1:74822431-74822586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
17-171
               

               
Cow position:
               
chr1:56711615-56711466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
17-174
               

               
Cow position:
               
chr1:3417332-3417495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
17-177
               

               
Cow position:
               
chr1:77232594-77232435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
17-177
               

               
Cow position:
               
chr1:95153207-95153365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
17-181
               

               
Cow position:
               
chr1:100474218-100474381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
17-185
               

               
Cow position:
               
chr1:3942231-3942063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 50
               

               
Conread position:
               
17-209
               

               
Cow position:
               
chr1:93528683-93528880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 51
               

               
Conread position:
               
17-224
               

               
Cow position:
               
chr1:57575780-57575563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
131, 45
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chr1:242541-242755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
170, 43
               

               
Conread position:
               
17-243
               

               
Cow position:
               
chr1:45315652-45315411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
158, 45
               

               
Conread position:
               
18-142
               

               
Cow position:
               
chr1:31598910-31599033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
18-181
               

               
Cow position:
               
chr1:62997784-62997943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
18-185
               

               
Cow position:
               
chr1:53397960-53398127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
127, 45
               

               
Conread position:
               
18-223
               

               
Cow position:
               
chr1:68817812-68817601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
19-157
               

               
Cow position:
               
chr1:5155232-5155096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
73, 61
               

               
Conread position:
               
19-176
               

               
Cow position:
               
chr1:3790081-3789928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
19-238
               

               
Cow position:
               
chr1:82513367-82513137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
119, 48
               

               
Conread position:
               
19-265
               

               
Cow position:
               
chr1:759432-759170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
155, 44
               

               
Conread position:
               
21-257
               

               
Cow position:
               
chr1:88913308-88913551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
154, 41
               

               
Conread position:
               
22-163
               

               
Cow position:
               
chr1:54157283-54157425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
22-172
               

               
Cow position:
               
chr1:43311783-43311633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
22-176
               

               
Cow position:
               
chr1:45874089-45873928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
22-177
               

               
Cow position:
               
chr1:8347112-8347266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
22-181
               

               
Cow position:
               
chr1:6381761-6381918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
22-191
               

               
Cow position:
               
chr1:19304561-19304726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
22-218
               

               
Cow position:
               
chr1:61011170-61011370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
143, 40
               

               
Conread position:
               
22-223
               

               
Cow position:
               
chr1:8604-8818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
22-223
               

               
Cow position:
               
chr1:15333884-15334088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
162, 40
               

               
Conread position:
               
22-224
               

               
Cow position:
               
chr1:22525867-22526075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
160, 49
               

               
Conread position:
               
22-241
               

               
Cow position:
               
chr1:66752640-66752412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
164, 45
               

               
Conread position:
               
22-243
               

               
Cow position:
               
chr1:24133071-24132841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
141, 40
               

               
Conread position:
               
22-248
               

               
Cow position:
               
chr1:31272453-31272230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
135, 39
               

               
Conread position:
               
22-248
               

               
Cow position:
               
chr1:44506962-44507191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
22-254
               

               
Cow position:
               
chr1:79630913-79630689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
155, 31
               

               
Conread position:
               
22-254
               

               
Cow position:
               
chr1:102753842-102754080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
22-257
               

               
Cow position:
               
chr1:95835809-95835561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
137, 45
               

               
Conread position:
               
22-285
               

               
Cow position:
               
chr1:51968525-51968792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
153, 254
               

               
Conread position:
               
23-147
               

               
Cow position:
               
chr1:52429670-52429547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
23-175
               

               
Cow position:
               
chr1:62036792-62036944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
134, 39
               

               
Conread position:
               
23-176
               

               
Cow position:
               
chr1:95152861-95153013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
23-177
               

               
Cow position:
               
chr1:24777999-24777850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
23-224
               

               
Cow position:
               
chr1:39224936-39224738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 40
               

               
Conread position:
               
23-224
               

               
Cow position:
               
chr1:68688573-68688780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
149, 44
               

               
Conread position:
               
23-226
               

               
Cow position:
               
chr1:8788281-8788493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
23-247
               

               
Cow position:
               
chr1:61005572-61005335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
137, 39
               

               
Conread position:
               
24-163
               

               
Cow position:
               
chr1:95499505-95499366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
129, 38
               

               
Conread position:
               
24-169
               

               
Cow position:
               
chr1:84255758-84255902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
68, 43
               

               
Conread position:
               
24-189
               

               
Cow position:
               
chr1:41697049-41697211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
125, 43
               

               
Conread position:
               
24-199
               

               
Cow position:
               
chr1:79146826-79146650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
129, 38
               

               
Conread position:
               
24-215
               

               
Cow position:
               
chr1:85772000-85772198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
110, 43
               

               
Conread position:
               
24-222
               

               
Cow position:
               
chr1:83606459-83606257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
153, 38
               

               
Conread position:
               
24-224
               

               
Cow position:
               
chr1:24530493-24530699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
24-225
               

               
Cow position:
               
chr1:101714112-101714318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 9
               

               
Conread position:
               
24-226
               

               
Cow position:
               
chr1:25383660-25383872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
124, 18
               

               
Conread position:
               
24-231
               

               
Cow position:
               
chr1:46143470-46143259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
149, 38
               

               
Conread position:
               
24-238
               

               
Cow position:
               
chr1:101439491-101439273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
135, 38
               

               
Conread position:
               
24-243
               

               
Cow position:
               
chr1:4414214-4414009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
24-250
               

               
Cow position:
               
chr1:90904765-90904531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
153, 38
               

               
Conread position:
               
24-256
               

               
Cow position:
               
chr1:93499611-93499854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
25-176
               

               
Cow position:
               
chr1:68845177-68845030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
68, 38
               

               
Conread position:
               
25-211
               

               
Cow position:
               
chr1:89158133-89157942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
25-241
               

               
Cow position:
               
chr1:78066545-78066324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
129, 37
               

               
Conread position:
               
25-254
               

               
Cow position:
               
chr1:41138152-41137913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
161, 37
               

               
Conread position:
               
26-170
               

               
Cow position:
               
chr1:76658084-76657931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
26-174
               

               
Cow position:
               
chr1:64019528-64019381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
26-175
               

               
Cow position:
               
chr1:88359871-88360019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
26-177
               

               
Cow position:
               
chr1:97750626-97750476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
26-215
               

               
Cow position:
               
chr1:89381268-89381466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
148, 37
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chr1:45555359-45555566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
133, 45
               

               
Conread position:
               
26-226
               

               
Cow position:
               
chr1:85028946-85029139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 36
               

               
Conread position:
               
26-236
               

               
Cow position:
               
chr1:22192762-22192982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
141, 34
               

               
Conread position:
               
27-154
               

               
Cow position:
               
chr1:95516033-95516159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
27-255
               

               
Cow position:
               
chr1:93590592-93590360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
150, 35
               

               
Conread position:
               
28-160
               

               
Cow position:
               
chr1:79844460-79844591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
28-185
               

               
Cow position:
               
chr1:31256227-31256077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
28-226
               

               
Cow position:
               
chr1:43855296-43855492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
158, 42
               

               
Conread position:
               
28-238
               

               
Cow position:
               
chr1:99605192-99604979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
128, 34
               

               
Conread position:
               
29-242
               

               
Cow position:
               
chr1:100852705-100852919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
148, 34
               

               
Conread position:
               
30-172
               

               
Cow position:
               
chr1:83783933-83783791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
30-222
               

               
Cow position:
               
chr1:95156967-95156766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
30-224
               

               
Cow position:
               
chr1:48618247-48618046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
31-243
               

               
Cow position:
               
chr1:7965851-7966067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
32-226
               

               
Cow position:
               
chr1:43499297-43499107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
33-224
               

               
Cow position:
               
chr1:100573627-100573427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
33-226
               

               
Cow position:
               
chr1:33331091-33330899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
33-243
               

               
Cow position:
               
chr1:87220460-87220663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
193, 29
               

               
Conread position:
               
34-176
               

               
Cow position:
               
chr1:53671750-53671608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 68
               

               
Conread position:
               
34-243
               

               
Cow position:
               
chr1:32014199-32014413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
34-247
               

               
Cow position:
               
chr1:98583753-98583969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
36-163
               

               
Cow position:
               
chr1:53640718-53640841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
36-174
               

               
Cow position:
               
chr1:32857035-32857178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
36-224
               

               
Cow position:
               
chr1:30948995-30949183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
36-246
               

               
Cow position:
               
chr1:55685975-55685755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
39-226
               

               
Cow position:
               
chr1:70483328-70483132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
138, 28
               

               
Conread position:
               
39-247
               

               
Cow position:
               
chr1:71946078-71945854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
41-226
               

               
Cow position:
               
chr1:11709010-11708821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
42-225
               

               
Cow position:
               
chr1:29935378-29935189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
42-244
               

               
Cow position:
               
chr1:524817-525025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
42-259
               

               
Cow position:
               
chr1:100538549-100538759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
141, 20
               

               
Conread position:
               
43-190
               

               
Cow position:
               
chr1:50585868-50585717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
43-244
               

               
Cow position:
               
chr1:71636315-71636110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
44-163
               

               
Cow position:
               
chr1:84288414-84288531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
44-226
               

               
Cow position:
               
chr1:63460889-63461081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
44-226
               

               
Cow position:
               
chr1:98557108-98556915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 18
               

               
Conread position:
               
45-218
               

               
Cow position:
               
chr1:98060073-98060254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
45-226
               

               
Cow position:
               
chr1:82537942-82538130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
46-248
               

               
Cow position:
               
chr1:85339400-85339599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
125, 18
               

               
Conread position:
               
46-251
               

               
Cow position:
               
chr1:42774924-42775132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
47-247
               

               
Cow position:
               
chr1:29671210-29671000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
47-264
               

               
Cow position:
               
chr1:70416746-70416521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
48-176
               

               
Cow position:
               
chr1:3962674-3962542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
48-177
               

               
Cow position:
               
chr1:76080821-76080949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
120, 38
               

               
Conread position:
               
48-243
               

               
Cow position:
               
chr1:102730747-102730535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
48-255
               

               
Cow position:
               
chr1:69378584-69378367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
49-177
               

               
Cow position:
               
chr1:100746837-100746707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
52-177
               

               
Cow position:
               
chr1:11381757-11381882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 123
               

               
Conread position:
               
52-241
               

               
Cow position:
               
chr1:32035691-32035493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
125, 10
               

               
Conread position:
               
52-241
               

               
Cow position:
               
chr1:76474538-76474341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
126, 10
               

               
Conread position:
               
52-248
               

               
Cow position:
               
chr1:84594907-84595118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
53-226
               

               
Cow position:
               
chr1:98742041-98742219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
55-226
               

               
Cow position:
               
chr1:19384434-19384254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
56-181
               

               
Cow position:
               
chr1:73494573-73494449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
56-231
               

               
Cow position:
               
chr1:9437266-9437079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 6
               

               
Conread position:
               
61-163
               

               
Cow position:
               
chr1:72356383-72356484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
61-177
               

               
Cow position:
               
chr1:70291814-70291930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
113, 97
               

               
Conread position:
               
61-223
               

               
Cow position:
               
chr1:34686207-34686365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 24
               

               
Conread position:
               
62-251
               

               
Cow position:
               
chr1:62469089-62469284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
63-243
               

               
Cow position:
               
chr1:77810731-77810543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 146
               

               
Conread position:
               
66-225
               

               
Cow position:
               
chr1:84910617-84910457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
70-224
               

               
Cow position:
               
chr1:84787306-84787461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
118, 103
               

               
Conread position:
               
72-175
               

               
Cow position:
               
chr1:79170115-79170012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-226
               

               
Cow position:
               
chr1:10470464-10470625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
113, 79
               

               
Conread position:
               
72-257
               

               
Cow position:
               
chr1:53456849-53457042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
102, 24
               

               
Conread position:
               
75-242
               

               
Cow position:
               
chr1:64516850-64516680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
77-246
               

               
Cow position:
               
chr1:3034156-3033984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
112, 57
               

               
Conread position:
               
78-226
               

               
Cow position:
               
chr1:53474200-53474351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
79-224
               

               
Cow position:
               
chr1:30028187-30028031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
97, 72
               

               
Conread position:
               
90-255
               

               
Cow position:
               
chr1:50906624-50906451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
84, 152
               

               
Conread position:
               
91-226
               

               
Cow position:
               
chr1:37470557-37470694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
91-226
               

               
Cow position:
               
chr1:39095545-39095688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
91-247
               

               
Cow position:
               
chr1:80423675-80423508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
91-254
               

               
Cow position:
               
chr1:81615711-81615879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 117
               

               
Conread position:
               
92-267
               

               
Cow position:
               
chr1:23101733-23101919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
102-258
               

               
Cow position:
               
chr1:45233059-45233215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
73, 41
               

               
Conread position:
               
112-250
               

               
Cow position:
               
chr1:99221555-99221406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               
Show alignments to all cow chromosomes.