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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8023H09.5
        

               
Conread position:
               
3-226
               

               
Cow position:
               
chr28:17739795-17740027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
175, 12
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr28:5630069-5630300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
155, 12
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chr28:16204362-16204189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
156, 11
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr28:3411015-3410787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
5-246
               

               
Cow position:
               
chr28:4834873-4834617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
86, 55
               

               
Conread position:
               
6-141
               

               
Cow position:
               
chr28:2872891-2873025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
6-168
               

               
Cow position:
               
chr28:2960860-2960696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
6-177
               

               
Cow position:
               
chr28:27161353-27161185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
6-222
               

               
Cow position:
               
chr28:11348396-11348603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
6-222
               

               
Cow position:
               
chr28:25128859-25129082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 7
               

               
Conread position:
               
6-224
               

               
Cow position:
               
chr28:777646-777876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
6-224
               

               
Cow position:
               
chr28:4070938-4071158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
6-224
               

               
Cow position:
               
chr28:19216794-19217012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
182, 56
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chr28:26719316-26719532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
6-227
               

               
Cow position:
               
chr28:25056937-25057159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
6-230
               

               
Cow position:
               
chr28:12430577-12430812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr28:3746170-3746411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
51, 10
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr28:7619178-7618942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 56
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr28:4016504-4016742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
183, 12
               

               
Conread position:
               
6-243
               

               
Cow position:
               
chr28:21868428-21868676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
6-247
               

               
Cow position:
               
chr28:5254844-5255094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
6-259
               

               
Cow position:
               
chr28:11884547-11884298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
167, 19
               

               
Conread position:
               
6-267
               

               
Cow position:
               
chr28:10964394-10964649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
7-177
               

               
Cow position:
               
chr28:25399847-25400011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
149, 9
               

               
Conread position:
               
7-246
               

               
Cow position:
               
chr28:2819748-2819984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
182, 55
               

               
Conread position:
               
8-243
               

               
Cow position:
               
chr28:5139018-5138780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
8-247
               

               
Cow position:
               
chr28:3275469-3275689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
234, 10
               

               
Conread position:
               
9-158
               

               
Cow position:
               
chr28:26922392-26922245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-164
               

               
Cow position:
               
chr28:4765650-4765804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
9-164
               

               
Cow position:
               
chr28:10775737-10775581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
9-168
               

               
Cow position:
               
chr28:9684360-9684200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
9-174
               

               
Cow position:
               
chr28:18770059-18770219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
9-175
               

               
Cow position:
               
chr28:4188519-4188693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 148
               

               
Conread position:
               
9-176
               

               
Cow position:
               
chr28:16211124-16210963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
9-177
               

               
Cow position:
               
chr28:7498172-7498005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
9-185
               

               
Cow position:
               
chr28:3408243-3408069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
9-201
               

               
Cow position:
               
chr28:21598276-21598093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
126, 7
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chr28:29434452-29434256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
123, 5
               

               
Conread position:
               
9-217
               

               
Cow position:
               
chr28:4045825-4046037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
168, 7
               

               
Conread position:
               
9-224
               

               
Cow position:
               
chr28:23410350-23410134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr28:2762171-2762374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr28:4090078-4089859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr28:4809755-4809972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
182, 7
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr28:4881265-4881047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
180, 53
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr28:7865303-7865507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr28:11422837-11422617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
139, 10
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr28:21008691-21008469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr28:21844934-21845153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
180, 13
               

               
Conread position:
               
9-226
               

               
Cow position:
               
chr28:30937691-30937481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
162, 13
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr28:9740442-9740665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
164, 13
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chr28:26614849-26615060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
9-236
               

               
Cow position:
               
chr28:11346512-11346277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
146, 53
               

               
Conread position:
               
9-238
               

               
Cow position:
               
chr28:3740852-3741084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
162, 7
               

               
Conread position:
               
9-238
               

               
Cow position:
               
chr28:9285394-9285163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
159, 7
               

               
Conread position:
               
9-243
               

               
Cow position:
               
chr28:29989143-29988889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr28:11426566-11426327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
174, 53
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr28:33884380-33884625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
168, 7
               

               
Conread position:
               
9-253
               

               
Cow position:
               
chr28:7350630-7350880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
165, 7
               

               
Conread position:
               
9-253
               

               
Cow position:
               
chr28:17949137-17948889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 7
               

               
Conread position:
               
9-258
               

               
Cow position:
               
chr28:5205247-5205483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
9-262
               

               
Cow position:
               
chr28:11987148-11987401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
9-262
               

               
Cow position:
               
chr28:12055386-12055639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
9-265
               

               
Cow position:
               
chr28:34248053-34247805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
186, 10
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chr28:29416741-29416480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chr28:33322433-33322692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr28:7927152-7927382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
12-156
               

               
Cow position:
               
chr28:28164066-28164205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
12-164
               

               
Cow position:
               
chr28:12070215-12070360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
12-176
               

               
Cow position:
               
chr28:25677363-25677201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
12-177
               

               
Cow position:
               
chr28:26220235-26220398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
12-177
               

               
Cow position:
               
chr28:33052012-33052178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 129
               

               
Conread position:
               
12-184
               

               
Cow position:
               
chr28:25596607-25596775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
6, 57
               

               
Conread position:
               
12-218
               

               
Cow position:
               
chr28:2279611-2279408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
138, 50
               

               
Conread position:
               
12-224
               

               
Cow position:
               
chr28:16370106-16369889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
12-226
               

               
Cow position:
               
chr28:4884277-4884051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 25
               

               
Conread position:
               
12-226
               

               
Cow position:
               
chr28:5437108-5436884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
12-231
               

               
Cow position:
               
chr28:3726234-3726001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
12-231
               

               
Cow position:
               
chr28:5204172-5204392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
12-235
               

               
Cow position:
               
chr28:7132109-7131880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr28:10863807-10863582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
12-248
               

               
Cow position:
               
chr28:16919190-16918948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
161, 50
               

               
Conread position:
               
12-248
               

               
Cow position:
               
chr28:20124761-20125003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
12-252
               

               
Cow position:
               
chr28:3445503-3445251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
12-257
               

               
Cow position:
               
chr28:9705630-9705892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
6, 52
               

               
Conread position:
               
13-163
               

               
Cow position:
               
chr28:11752160-11752011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
79, 50
               

               
Conread position:
               
13-224
               

               
Cow position:
               
chr28:4101499-4101712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
49, 139
               

               
Conread position:
               
13-224
               

               
Cow position:
               
chr28:5074527-5074321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
166, 6
               

               
Conread position:
               
13-226
               

               
Cow position:
               
chr28:2131945-2131740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
13-240
               

               
Cow position:
               
chr28:11016387-11016617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
13-257
               

               
Cow position:
               
chr28:6059491-6059246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
181, 49
               

               
Conread position:
               
14-223
               

               
Cow position:
               
chr28:7267963-7267750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
14-224
               

               
Cow position:
               
chr28:12991115-12991335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
14-225
               

               
Cow position:
               
chr28:30746751-30746537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
14-244
               

               
Cow position:
               
chr28:9636478-9636240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
15-156
               

               
Cow position:
               
chr28:12619556-12619695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
15-164
               

               
Cow position:
               
chr28:10172435-10172288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
15-175
               

               
Cow position:
               
chr28:20313258-20313415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
15-212
               

               
Cow position:
               
chr28:12964551-12964745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
131, 47
               

               
Conread position:
               
15-224
               

               
Cow position:
               
chr28:22500516-22500306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
168, 54
               

               
Conread position:
               
15-224
               

               
Cow position:
               
chr28:22813243-22813448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
158, 47
               

               
Conread position:
               
15-225
               

               
Cow position:
               
chr28:30327107-30326900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
15-241
               

               
Cow position:
               
chr28:6975222-6975447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
16-157
               

               
Cow position:
               
chr28:16246082-16245943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-175
               

               
Cow position:
               
chr28:15043879-15043722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-176
               

               
Cow position:
               
chr28:24706879-24707038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr28:2898971-2899131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr28:8022120-8021958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
131, 45
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr28:19026023-19025863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
16-177
               

               
Cow position:
               
chr28:19222168-19222010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
16-181
               

               
Cow position:
               
chr28:26743608-26743772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-185
               

               
Cow position:
               
chr28:16346549-16346383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-205
               

               
Cow position:
               
chr28:32174611-32174797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
16-211
               

               
Cow position:
               
chr28:4938795-4938982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
158, 46
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chr28:14998049-14998258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
16-223
               

               
Cow position:
               
chr28:11743837-11743629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr28:5193313-5193523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr28:8304229-8304442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 48
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr28:19564246-19564035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
167, 51
               

               
Conread position:
               
16-224
               

               
Cow position:
               
chr28:24082252-24082470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
16-225
               

               
Cow position:
               
chr28:3449285-3449510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
113, 46
               

               
Conread position:
               
16-225
               

               
Cow position:
               
chr28:11866683-11866467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
171, 46
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr28:10589039-10588831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr28:11585220-11585007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
147, 47
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr28:11828974-11828757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
162, 30
               

               
Conread position:
               
16-226
               

               
Cow position:
               
chr28:23007748-23007540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-227
               

               
Cow position:
               
chr28:25249336-25249538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
16-231
               

               
Cow position:
               
chr28:3078699-3078489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
16-245
               

               
Cow position:
               
chr28:3492801-3492565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
169, 43
               

               
Conread position:
               
16-248
               

               
Cow position:
               
chr28:4361466-4361252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
16-248
               

               
Cow position:
               
chr28:5144539-5144289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
161, 46
               

               
Conread position:
               
16-251
               

               
Cow position:
               
chr28:3011287-3011036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
16-254
               

               
Cow position:
               
chr28:3023931-3023686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
169, 51
               

               
Conread position:
               
16-254
               

               
Cow position:
               
chr28:11079290-11079535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
102, 32
               

               
Conread position:
               
16-254
               

               
Cow position:
               
chr28:24966369-24966616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
112, 31
               

               
Conread position:
               
16-255
               

               
Cow position:
               
chr28:11816684-11816453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
17-144
               

               
Cow position:
               
chr28:2862851-2862977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
17-177
               

               
Cow position:
               
chr28:2752511-2752352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chr28:7008995-7008779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
170, 45
               

               
Conread position:
               
17-226
               

               
Cow position:
               
chr28:10977824-10978040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
77, 43
               

               
Conread position:
               
17-246
               

               
Cow position:
               
chr28:11307535-11307294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
122, 50
               

               
Conread position:
               
17-258
               

               
Cow position:
               
chr28:4013067-4013319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 43
               

               
Conread position:
               
18-222
               

               
Cow position:
               
chr28:4181985-4182199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
19-172
               

               
Cow position:
               
chr28:8140467-8140619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
19-245
               

               
Cow position:
               
chr28:29850830-29850604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
165, 43
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr28:15362565-15362830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
124, 42
               

               
Conread position:
               
22-176
               

               
Cow position:
               
chr28:8149644-8149491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
22-216
               

               
Cow position:
               
chr28:3914704-3914897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
22-222
               

               
Cow position:
               
chr28:3143887-3143687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
162, 45
               

               
Conread position:
               
22-224
               

               
Cow position:
               
chr28:6091347-6091556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
22-226
               

               
Cow position:
               
chr28:662094-662302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 40
               

               
Conread position:
               
22-247
               

               
Cow position:
               
chr28:4823592-4823825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
105, 40
               

               
Conread position:
               
22-247
               

               
Cow position:
               
chr28:24646581-24646803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
167, 41
               

               
Conread position:
               
23-156
               

               
Cow position:
               
chr28:3147471-3147599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
23-231
               

               
Cow position:
               
chr28:28501222-28501424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
173, 40
               

               
Conread position:
               
24-176
               

               
Cow position:
               
chr28:22148025-22147873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 38
               

               
Conread position:
               
24-177
               

               
Cow position:
               
chr28:3397207-3397059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
124, 29
               

               
Conread position:
               
24-177
               

               
Cow position:
               
chr28:32179687-32179836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
141, 41
               

               
Conread position:
               
24-185
               

               
Cow position:
               
chr28:11527268-11527106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
125, 43
               

               
Conread position:
               
24-216
               

               
Cow position:
               
chr28:26531287-26531089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
139, 38
               

               
Conread position:
               
24-224
               

               
Cow position:
               
chr28:13474290-13474499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
134, 39
               

               
Conread position:
               
24-254
               

               
Cow position:
               
chr28:26982748-26982506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
154, 38
               

               
Conread position:
               
24-270
               

               
Cow position:
               
chr28:5577516-5577761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
25-170
               

               
Cow position:
               
chr28:29199721-29199865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
25-226
               

               
Cow position:
               
chr28:5805662-5805864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
134, 39
               

               
Conread position:
               
25-226
               

               
Cow position:
               
chr28:7557743-7557525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
124, 37
               

               
Conread position:
               
25-226
               

               
Cow position:
               
chr28:8396326-8396527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
170, 37
               

               
Conread position:
               
25-246
               

               
Cow position:
               
chr28:4158946-4159186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
141, 38
               

               
Conread position:
               
26-174
               

               
Cow position:
               
chr28:4364830-4364687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
26-223
               

               
Cow position:
               
chr28:1099668-1099478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
157, 35
               

               
Conread position:
               
26-236
               

               
Cow position:
               
chr28:32358100-32358317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
26-248
               

               
Cow position:
               
chr28:19039027-19038793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
135, 36
               

               
Conread position:
               
27-224
               

               
Cow position:
               
chr28:8787533-8787739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
28-144
               

               
Cow position:
               
chr28:25675511-25675396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
28-185
               

               
Cow position:
               
chr28:34133856-34134012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
28-216
               

               
Cow position:
               
chr28:16879567-16879760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
142, 39
               

               
Conread position:
               
30-175
               

               
Cow position:
               
chr28:6971352-6971208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
30-240
               

               
Cow position:
               
chr28:30902122-30902334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
31-147
               

               
Cow position:
               
chr28:27429028-27429143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
31-226
               

               
Cow position:
               
chr28:5684700-5684902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
32-231
               

               
Cow position:
               
chr28:26784243-26784049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
33-169
               

               
Cow position:
               
chr28:4355547-4355680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
33-224
               

               
Cow position:
               
chr28:4877432-4877232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
34-248
               

               
Cow position:
               
chr28:4876443-4876657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
34-254
               

               
Cow position:
               
chr28:21207368-21207144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
84, 28
               

               
Conread position:
               
35-224
               

               
Cow position:
               
chr28:24996612-24996418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
36-224
               

               
Cow position:
               
chr28:26960909-26960713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
37-175
               

               
Cow position:
               
chr28:4051201-4051340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
37-177
               

               
Cow position:
               
chr28:18533903-18533765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
37-231
               

               
Cow position:
               
chr28:2151436-2151233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 7
               

               
Conread position:
               
38-177
               

               
Cow position:
               
chr28:12385289-12385150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
39-226
               

               
Cow position:
               
chr28:10891303-10891124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 15
               

               
Conread position:
               
40-226
               

               
Cow position:
               
chr28:9109222-9109413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
40-252
               

               
Cow position:
               
chr28:20046559-20046775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
148, 22
               

               
Conread position:
               
41-226
               

               
Cow position:
               
chr28:2777537-2777732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
117, 21
               

               
Conread position:
               
42-256
               

               
Cow position:
               
chr28:10890727-10890511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
129, 20
               

               
Conread position:
               
53-247
               

               
Cow position:
               
chr28:24651590-24651393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 149
               

               
Conread position:
               
56-222
               

               
Cow position:
               
chr28:3678384-3678557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
92, 6
               

               
Conread position:
               
58-292
               

               
Cow position:
               
chr28:29500427-29500680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
59-243
               

               
Cow position:
               
chr28:7750992-7750802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
127, 92
               

               
Conread position:
               
62-241
               

               
Cow position:
               
chr28:8936177-8936366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 75
               

               
Conread position:
               
64-185
               

               
Cow position:
               
chr28:17943759-17943880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
67-226
               

               
Cow position:
               
chr28:26868119-26867952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
70-224
               

               
Cow position:
               
chr28:8681395-8681237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
70-256
               

               
Cow position:
               
chr28:11305598-11305406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
88, 162
               

               
Conread position:
               
71-237
               

               
Cow position:
               
chr28:16681390-16681549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
71-258
               

               
Cow position:
               
chr28:4027426-4027232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
72-241
               

               
Cow position:
               
chr28:10762931-10763104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
78-226
               

               
Cow position:
               
chr28:2435989-2435836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
79-248
               

               
Cow position:
               
chr28:4866529-4866354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
106, 91
               

               
Conread position:
               
90-210
               

               
Cow position:
               
chr28:4100704-4100578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
87, 59
               

               
Conread position:
               
91-226
               

               
Cow position:
               
chr28:2737462-2737325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
91-226
               

               
Cow position:
               
chr28:4588374-4588516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
94, 128
               

               
Conread position:
               
91-252
               

               
Cow position:
               
chr28:24238421-24238256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 60
               

               
Conread position:
               
106-240
               

               
Cow position:
               
chr28:7808710-7808846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               
Show alignments to all cow chromosomes.