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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8023L17.3
        

               
Conread position:
               
3-497
               

               
Cow position:
               
chrX:21064557-21064046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
3-499
               

               
Cow position:
               
chrX:11843965-11844483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
7-387
               

               
Cow position:
               
chrX:34504785-34505172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
7-495
               

               
Cow position:
               
chrX:42492254-42492748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 7
               

               
Conread position:
               
8-466
               

               
Cow position:
               
chrX:3580209-3579738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
9-358
               

               
Cow position:
               
chrX:34836809-34837150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
300, 34
               

               
Conread position:
               
9-497
               

               
Cow position:
               
chrX:38935545-38935041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
115, 130
               

               
Conread position:
               
9-497
               

               
Cow position:
               
chrX:44962018-44961507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
10-382
               

               
Cow position:
               
chrX:4403583-4403194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
121, 102
               

               
Conread position:
               
12-498
               

               
Cow position:
               
chrX:30133063-30133565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
168, 31
               

               
Conread position:
               
12-499
               

               
Cow position:
               
chrX:23563530-23564039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 10
               

               
Conread position:
               
13-206
               

               
Cow position:
               
chrX:14135937-14135746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
13-491
               

               
Cow position:
               
chrX:37489991-37489496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
13-499
               

               
Cow position:
               
chrX:4632595-4633094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 29
               

               
Conread position:
               
14-426
               

               
Cow position:
               
chrX:35885472-35885896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
14-466
               

               
Cow position:
               
chrX:34412104-34411634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
14-478
               

               
Cow position:
               
chrX:7863319-7863790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
125, 145
               

               
Conread position:
               
14-496
               

               
Cow position:
               
chrX:9361143-9360644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
310, 41
               

               
Conread position:
               
14-497
               

               
Cow position:
               
chrX:21672824-21672311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
14-499
               

               
Cow position:
               
chrX:20887389-20887886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
15-320
               

               
Cow position:
               
chrX:4152788-4153079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
259, 28
               

               
Conread position:
               
15-487
               

               
Cow position:
               
chrX:42380851-42381330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
16-394
               

               
Cow position:
               
chrX:5919742-5919364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
163, 27
               

               
Conread position:
               
16-418
               

               
Cow position:
               
chrX:45977182-45976765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
212, 42
               

               
Conread position:
               
16-498
               

               
Cow position:
               
chrX:7179141-7178668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
266, 42
               

               
Conread position:
               
16-499
               

               
Cow position:
               
chrX:44055059-44054560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 20
               

               
Conread position:
               
17-258
               

               
Cow position:
               
chrX:20583920-20583682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 63
               

               
Conread position:
               
17-279
               

               
Cow position:
               
chrX:2936208-2935952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
17-306
               

               
Cow position:
               
chrX:6599519-6599815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
17-489
               

               
Cow position:
               
chrX:17231994-17231502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 42
               

               
Conread position:
               
17-507
               

               
Cow position:
               
chrX:22813323-22812813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 124
               

               
Conread position:
               
18-320
               

               
Cow position:
               
chrX:12095518-12095817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
148, 23
               

               
Conread position:
               
18-457
               

               
Cow position:
               
chrX:33001154-33000706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
255, 28
               

               
Conread position:
               
18-488
               

               
Cow position:
               
chrX:12979578-12980060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 109
               

               
Conread position:
               
18-499
               

               
Cow position:
               
chrX:4996844-4996369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
68, 28
               

               
Conread position:
               
18-499
               

               
Cow position:
               
chrX:5637922-5638411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
246, 95
               

               
Conread position:
               
18-499
               

               
Cow position:
               
chrX:31436725-31436238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 41
               

               
Conread position:
               
18-499
               

               
Cow position:
               
chrX:32019873-32020364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 148
               

               
Conread position:
               
18-507
               

               
Cow position:
               
chrX:41674357-41673851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
19-261
               

               
Cow position:
               
chrX:20957490-20957251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
130, 26
               

               
Conread position:
               
19-469
               

               
Cow position:
               
chrX:46588074-46587608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
105, 23
               

               
Conread position:
               
19-481
               

               
Cow position:
               
chrX:13191313-13191768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
361, 26
               

               
Conread position:
               
19-491
               

               
Cow position:
               
chrX:48010860-48010360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
94, 37
               

               
Conread position:
               
20-269
               

               
Cow position:
               
chrX:27668706-27668953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
20-307
               

               
Cow position:
               
chrX:27306694-27306420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
259, 89
               

               
Conread position:
               
20-500
               

               
Cow position:
               
chrX:8925935-8925460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
285, 93
               

               
Conread position:
               
21-521
               

               
Cow position:
               
chrX:152162-151634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
22, 166
               

               
Conread position:
               
22-286
               

               
Cow position:
               
chrX:16836041-16836299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
253, 92
               

               
Conread position:
               
22-288
               

               
Cow position:
               
chrX:26843012-26843281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 146
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chrX:4289686-4289408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
211, 36
               

               
Conread position:
               
22-385
               

               
Cow position:
               
chrX:18111632-18111267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
102, 119
               

               
Conread position:
               
22-499
               

               
Cow position:
               
chrX:27446934-27446446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
22-499
               

               
Cow position:
               
chrX:31489773-31489270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
122, 36
               

               
Conread position:
               
22-510
               

               
Cow position:
               
chrX:15146942-15147441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
23-287
               

               
Cow position:
               
chrX:12972930-12972668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
154, 109
               

               
Conread position:
               
23-480
               

               
Cow position:
               
chrX:13177233-13177688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 35
               

               
Conread position:
               
23-499
               

               
Cow position:
               
chrX:12437033-12437481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
435, 23
               

               
Conread position:
               
24-221
               

               
Cow position:
               
chrX:51653-51848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
155, 22
               

               
Conread position:
               
24-282
               

               
Cow position:
               
chrX:32942828-32943086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
24-375
               

               
Cow position:
               
chrX:9650780-9651138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
24-477
               

               
Cow position:
               
chrX:46072576-46073042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
24-491
               

               
Cow position:
               
chrX:30962625-30963106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
128, 34
               

               
Conread position:
               
24-498
               

               
Cow position:
               
chrX:25815650-25816137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 22
               

               
Conread position:
               
24-499
               

               
Cow position:
               
chrX:4268820-4269310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
150, 34
               

               
Conread position:
               
24-499
               

               
Cow position:
               
chrX:27705836-27705351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
24-499
               

               
Cow position:
               
chrX:34565534-34565055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
24-499
               

               
Cow position:
               
chrX:41878688-41879173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 19
               

               
Conread position:
               
24-501
               

               
Cow position:
               
chrX:40826500-40826991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
25-496
               

               
Cow position:
               
chrX:45598357-45598843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
25-497
               

               
Cow position:
               
chrX:5118252-5118725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
25-499
               

               
Cow position:
               
chrX:10865621-10866109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
25-500
               

               
Cow position:
               
chrX:27431675-27432162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 33
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chrX:16984882-16984633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
26-458
               

               
Cow position:
               
chrX:32420458-32420020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
26-469
               

               
Cow position:
               
chrX:45110898-45110442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
207, 20
               

               
Conread position:
               
26-482
               

               
Cow position:
               
chrX:21642232-21642703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
97, 121
               

               
Conread position:
               
26-487
               

               
Cow position:
               
chrX:7722224-7721754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
26-499
               

               
Cow position:
               
chrX:7351547-7351057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
26-499
               

               
Cow position:
               
chrX:15546129-15545655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
27-249
               

               
Cow position:
               
chrX:32867120-32866900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
27-302
               

               
Cow position:
               
chrX:28940491-28940218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
28-209
               

               
Cow position:
               
chrX:41215569-41215387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
111, 30
               

               
Conread position:
               
28-456
               

               
Cow position:
               
chrX:16996741-16996310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
50, 124
               

               
Conread position:
               
28-499
               

               
Cow position:
               
chrX:31729682-31729216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
271, 14
               

               
Conread position:
               
28-499
               

               
Cow position:
               
chrX:31948688-31949173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
29-387
               

               
Cow position:
               
chrX:2523456-2523787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
340, 17
               

               
Conread position:
               
29-424
               

               
Cow position:
               
chrX:15231416-15231822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
137, 12
               

               
Conread position:
               
29-431
               

               
Cow position:
               
chrX:27145844-27145452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 29
               

               
Conread position:
               
29-473
               

               
Cow position:
               
chrX:11633927-11633462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
114, 29
               

               
Conread position:
               
29-489
               

               
Cow position:
               
chrX:36976192-36975717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
29-496
               

               
Cow position:
               
chrX:41526288-41526760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
252, 60
               

               
Conread position:
               
29-499
               

               
Cow position:
               
chrX:11656322-11655844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 13
               

               
Conread position:
               
29-499
               

               
Cow position:
               
chrX:12290962-12290494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
29-499
               

               
Cow position:
               
chrX:27508778-27509262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
119, 131
               

               
Conread position:
               
30-239
               

               
Cow position:
               
chrX:34991606-34991399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
30-499
               

               
Cow position:
               
chrX:34532755-34532289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
30-500
               

               
Cow position:
               
chrX:34441210-34441693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
31-320
               

               
Cow position:
               
chrX:29050484-29050203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
242, 15
               

               
Conread position:
               
32-298
               

               
Cow position:
               
chrX:33854985-33855245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
226, 14
               

               
Conread position:
               
32-400
               

               
Cow position:
               
chrX:41871298-41870933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
242, 14
               

               
Conread position:
               
32-424
               

               
Cow position:
               
chrX:25207619-25208011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 26
               

               
Conread position:
               
32-431
               

               
Cow position:
               
chrX:22387001-22387419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
32-476
               

               
Cow position:
               
chrX:36356347-36355907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 113
               

               
Conread position:
               
32-482
               

               
Cow position:
               
chrX:1466407-1465962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
32-491
               

               
Cow position:
               
chrX:43115391-43114937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
32-495
               

               
Cow position:
               
chrX:34454902-34454431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
92, 120
               

               
Conread position:
               
32-499
               

               
Cow position:
               
chrX:20339654-20340133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
33-499
               

               
Cow position:
               
chrX:40183113-40183592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
33-521
               

               
Cow position:
               
chrX:25035141-25035653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
34-469
               

               
Cow position:
               
chrX:1499894-1499461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
275, 25
               

               
Conread position:
               
35-258
               

               
Cow position:
               
chrX:31480205-31479987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
35-283
               

               
Cow position:
               
chrX:4467189-4466958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
35-301
               

               
Cow position:
               
chrX:22392747-22393012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
6, 100
               

               
Conread position:
               
35-499
               

               
Cow position:
               
chrX:34377177-34376715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 11
               

               
Conread position:
               
36-307
               

               
Cow position:
               
chrX:19469276-19469538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
36-493
               

               
Cow position:
               
chrX:46532251-46532745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
109, 333
               

               
Conread position:
               
37-307
               

               
Cow position:
               
chrX:11325868-11326132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
37-307
               

               
Cow position:
               
chrX:19394793-19394520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
37-431
               

               
Cow position:
               
chrX:4399356-4398954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
182, 150
               

               
Conread position:
               
37-493
               

               
Cow position:
               
chrX:45502375-45501912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
37-510
               

               
Cow position:
               
chrX:38964334-38963857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 21
               

               
Conread position:
               
38-466
               

               
Cow position:
               
chrX:27175236-27174789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
39-489
               

               
Cow position:
               
chrX:9201778-9201315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
41-510
               

               
Cow position:
               
chrX:9251930-9252429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 17
               

               
Conread position:
               
42-477
               

               
Cow position:
               
chrX:36283572-36283125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
137, 16
               

               
Conread position:
               
42-489
               

               
Cow position:
               
chrX:38549679-38549216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 103
               

               
Conread position:
               
43-457
               

               
Cow position:
               
chrX:10251970-10252379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 87
               

               
Conread position:
               
43-494
               

               
Cow position:
               
chrX:31250622-31250155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
43-497
               

               
Cow position:
               
chrX:34554956-34554490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
116, 127
               

               
Conread position:
               
43-499
               

               
Cow position:
               
chrX:28846661-28847121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
45-497
               

               
Cow position:
               
chrX:47248567-47249028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
232, 101
               

               
Conread position:
               
45-499
               

               
Cow position:
               
chrX:15006929-15007393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
260, 69
               

               
Conread position:
               
46-193
               

               
Cow position:
               
chrX:31279699-31279843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
46-232
               

               
Cow position:
               
chrX:23471639-23471824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
46-277
               

               
Cow position:
               
chrX:39290583-39290356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
46-278
               

               
Cow position:
               
chrX:32208598-32208826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
46-432
               

               
Cow position:
               
chrX:34792095-34792483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
251, 12
               

               
Conread position:
               
46-466
               

               
Cow position:
               
chrX:4825619-4826034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
224, 74
               

               
Conread position:
               
46-495
               

               
Cow position:
               
chrX:14883729-14884200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
46-495
               

               
Cow position:
               
chrX:37072615-37072168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 89
               

               
Conread position:
               
46-499
               

               
Cow position:
               
chrX:22115086-22115520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
46-499
               

               
Cow position:
               
chrX:31442611-31443063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 12
               

               
Conread position:
               
46-499
               

               
Cow position:
               
chrX:38218942-38218473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
127, 89
               

               
Conread position:
               
46-499
               

               
Cow position:
               
chrX:41123274-41122830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
46-499
               

               
Cow position:
               
chrX:45429802-45430260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 13
               

               
Conread position:
               
46-499
               

               
Cow position:
               
chrX:46032499-46032960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
80, 37
               

               
Conread position:
               
46-510
               

               
Cow position:
               
chrX:16762996-16762517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
131, 13
               

               
Conread position:
               
46-512
               

               
Cow position:
               
chrX:38853440-38852945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 178
               

               
Conread position:
               
46-521
               

               
Cow position:
               
chrX:38094297-38094792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 38
               

               
Conread position:
               
47-246
               

               
Cow position:
               
chrX:23358889-23359083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
47-400
               

               
Cow position:
               
chrX:34314249-34313889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
205, 88
               

               
Conread position:
               
47-505
               

               
Cow position:
               
chrX:13913303-13912830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 92
               

               
Conread position:
               
48-466
               

               
Cow position:
               
chrX:29542001-29542425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 116
               

               
Conread position:
               
52-299
               

               
Cow position:
               
chrX:1087926-1088167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
226, 6
               

               
Conread position:
               
52-395
               

               
Cow position:
               
chrX:21986079-21986425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
225, 6
               

               
Conread position:
               
52-452
               

               
Cow position:
               
chrX:8869182-8869601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 6
               

               
Conread position:
               
52-473
               

               
Cow position:
               
chrX:29601607-29602049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 6
               

               
Conread position:
               
52-483
               

               
Cow position:
               
chrX:44397233-44396789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
72, 6
               

               
Conread position:
               
52-495
               

               
Cow position:
               
chrX:17795201-17794747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 6
               

               
Conread position:
               
52-499
               

               
Cow position:
               
chrX:6544467-6544014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 6
               

               
Conread position:
               
52-499
               

               
Cow position:
               
chrX:22482467-22482931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 6
               

               
Conread position:
               
52-499
               

               
Cow position:
               
chrX:23497475-23497905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
412, 6
               

               
Conread position:
               
52-507
               

               
Cow position:
               
chrX:22075017-22074550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 6
               

               
Conread position:
               
52-510
               

               
Cow position:
               
chrX:7695985-7695508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 6
               

               
Conread position:
               
55-499
               

               
Cow position:
               
chrX:14973537-14973974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
251, 64
               

               
Conread position:
               
55-499
               

               
Cow position:
               
chrX:15485413-15485870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
68, 97
               

               
Conread position:
               
56-509
               

               
Cow position:
               
chrX:21663514-21663057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
113, 220
               

               
Conread position:
               
57-361
               

               
Cow position:
               
chrX:10516472-10516157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 113
               

               
Conread position:
               
57-394
               

               
Cow position:
               
chrX:40685111-40685463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 0
               

               
Conread position:
               
57-494
               

               
Cow position:
               
chrX:42246963-42247420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 114
               

               
Conread position:
               
57-497
               

               
Cow position:
               
chrX:38642460-38642020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 25
               

               
Conread position:
               
57-499
               

               
Cow position:
               
chrX:20152066-20151608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
200, 57
               

               
Conread position:
               
57-499
               

               
Cow position:
               
chrX:35269074-35268648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
58-306
               

               
Cow position:
               
chrX:24749304-24749056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
70, 52
               

               
Conread position:
               
58-375
               

               
Cow position:
               
chrX:29230224-29229896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 123
               

               
Conread position:
               
58-376
               

               
Cow position:
               
chrX:42927613-42927933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
225, 34
               

               
Conread position:
               
58-426
               

               
Cow position:
               
chrX:6407761-6407382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 112
               

               
Conread position:
               
58-442
               

               
Cow position:
               
chrX:32821257-32820847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 181
               

               
Conread position:
               
58-497
               

               
Cow position:
               
chrX:34544003-34543547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 385
               

               
Conread position:
               
58-520
               

               
Cow position:
               
chrX:9634975-9635445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 24
               

               
Conread position:
               
59-466
               

               
Cow position:
               
chrX:10831265-10831703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
64, 88
               

               
Conread position:
               
59-492
               

               
Cow position:
               
chrX:27515075-27514633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
86, 217
               

               
Conread position:
               
59-498
               

               
Cow position:
               
chrX:1055165-1055629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
85, 103
               

               
Conread position:
               
59-499
               

               
Cow position:
               
chrX:8731310-8730837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 111
               

               
Conread position:
               
59-499
               

               
Cow position:
               
chrX:15597244-15596796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 92
               

               
Conread position:
               
59-511
               

               
Cow position:
               
chrX:1615842-1616306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
204, 51
               

               
Conread position:
               
60-435
               

               
Cow position:
               
chrX:4278904-4279290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
60-458
               

               
Cow position:
               
chrX:29544671-29545078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
215, 22
               

               
Conread position:
               
60-473
               

               
Cow position:
               
chrX:37780897-37781329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 20
               

               
Conread position:
               
60-510
               

               
Cow position:
               
chrX:34238938-34238466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
61-498
               

               
Cow position:
               
chrX:35273586-35273103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
69, 161
               

               
Conread position:
               
62-494
               

               
Cow position:
               
chrX:6690045-6690485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
23, 214
               

               
Conread position:
               
64-495
               

               
Cow position:
               
chrX:31294358-31294780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
73, 64
               

               
Conread position:
               
67-466
               

               
Cow position:
               
chrX:40035231-40035652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 168
               

               
Conread position:
               
67-487
               

               
Cow position:
               
chrX:35543092-35542661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 76
               

               
Conread position:
               
67-488
               

               
Cow position:
               
chrX:22822263-22821816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 112
               

               
Conread position:
               
67-499
               

               
Cow position:
               
chrX:47344507-47344052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
89, 281
               

               
Conread position:
               
67-510
               

               
Cow position:
               
chrX:46770754-46771227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 97
               

               
Conread position:
               
67-518
               

               
Cow position:
               
chrX:12309177-12309648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 104
               

               
Conread position:
               
70-425
               

               
Cow position:
               
chrX:14275542-14275901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
7, 59
               

               
Conread position:
               
72-486
               

               
Cow position:
               
chrX:30922375-30921956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
77-431
               

               
Cow position:
               
chrX:169343-169697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 154
               

               
Conread position:
               
84-497
               

               
Cow position:
               
chrX:45968337-45967922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
150, 64
               

               
Conread position:
               
84-498
               

               
Cow position:
               
chrX:34662655-34663080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
47, 99
               

               
Conread position:
               
85-497
               

               
Cow position:
               
chrX:13647594-13648024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 140
               

               
Conread position:
               
87-495
               

               
Cow position:
               
chrX:6414226-6413808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
223, 56
               

               
Conread position:
               
95-499
               

               
Cow position:
               
chrX:32170712-32171124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
101-466
               

               
Cow position:
               
chrX:842329-841952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
102-489
               

               
Cow position:
               
chrX:45175021-45174612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
181, 11
               

               
Conread position:
               
106-495
               

               
Cow position:
               
chrX:878214-878609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 37
               

               
Conread position:
               
106-497
               

               
Cow position:
               
chrX:41884246-41884658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 29
               

               
Conread position:
               
106-499
               

               
Cow position:
               
chrX:5872483-5872071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
108-344
               

               
Cow position:
               
chrX:41192866-41192626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
167, 18
               

               
Conread position:
               
112-492
               

               
Cow position:
               
chrX:28134498-28134111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
176, 24
               

               
Conread position:
               
113-463
               

               
Cow position:
               
chrX:36068178-36067816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
29, 248
               

               
Conread position:
               
114-495
               

               
Cow position:
               
chrX:34503080-34502682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 159
               

               
Conread position:
               
114-497
               

               
Cow position:
               
chrX:27393868-27394254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 29
               

               
Conread position:
               
114-499
               

               
Cow position:
               
chrX:40269652-40269234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
121-450
               

               
Cow position:
               
chrX:31312180-31311835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 22
               

               
Conread position:
               
121-497
               

               
Cow position:
               
chrX:35387775-35388147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 20
               

               
Conread position:
               
133-499
               

               
Cow position:
               
chrX:45414162-45414542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 136
               

               
Conread position:
               
135-486
               

               
Cow position:
               
chrX:7513625-7513287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 10
               

               
Conread position:
               
138-489
               

               
Cow position:
               
chrX:32623706-32623351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 17
               

               
Conread position:
               
138-501
               

               
Cow position:
               
chrX:39558213-39558594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
139-307
               

               
Cow position:
               
chrX:29585254-29585088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
139-496
               

               
Cow position:
               
chrX:11938799-11939163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
140-395
               

               
Cow position:
               
chrX:37986359-37986100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
146, 61
               

               
Conread position:
               
141-473
               

               
Cow position:
               
chrX:29121180-29120842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
162, 252
               

               
Conread position:
               
141-477
               

               
Cow position:
               
chrX:23092004-23091661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 169
               

               
Conread position:
               
141-488
               

               
Cow position:
               
chrX:5017289-5017639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
141-494
               

               
Cow position:
               
chrX:37232540-37232172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 124
               

               
Conread position:
               
141-495
               

               
Cow position:
               
chrX:11082489-11082851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
141-497
               

               
Cow position:
               
chrX:4043734-4044090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
134, 63
               

               
Conread position:
               
141-521
               

               
Cow position:
               
chrX:40557546-40557943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 267
               

               
Conread position:
               
142-493
               

               
Cow position:
               
chrX:30420820-30421175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
247, 84
               

               
Conread position:
               
142-493
               

               
Cow position:
               
chrX:30543152-30543518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
129, 224
               

               
Conread position:
               
142-499
               

               
Cow position:
               
chrX:7278043-7277685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
177, 133
               

               
Conread position:
               
145-478
               

               
Cow position:
               
chrX:37574969-37574635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 135
               

               
Conread position:
               
145-497
               

               
Cow position:
               
chrX:33493905-33493535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
145-499
               

               
Cow position:
               
chrX:18694802-18695163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
156, 64
               

               
Conread position:
               
146-477
               

               
Cow position:
               
chrX:1503455-1503119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
27, 33
               

               
Conread position:
               
146-499
               

               
Cow position:
               
chrX:42171168-42171541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 31
               

               
Conread position:
               
148-307
               

               
Cow position:
               
chrX:12082198-12082357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
130, 66
               

               
Conread position:
               
148-317
               

               
Cow position:
               
chrX:19273581-19273756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
148-320
               

               
Cow position:
               
chrX:46429693-46429866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 163
               

               
Conread position:
               
148-358
               

               
Cow position:
               
chrX:11851553-11851765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
148-395
               

               
Cow position:
               
chrX:38066329-38066583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
148-451
               

               
Cow position:
               
chrX:43730098-43730406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
155, 94
               

               
Conread position:
               
148-495
               

               
Cow position:
               
chrX:917242-917607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
153, 105
               

               
Conread position:
               
148-497
               

               
Cow position:
               
chrX:37119719-37119359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
131, 87
               

               
Conread position:
               
148-499
               

               
Cow position:
               
chrX:17726101-17725736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 329
               

               
Conread position:
               
148-499
               

               
Cow position:
               
chrX:31373662-31373332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
208, 100
               

               
Conread position:
               
148-499
               

               
Cow position:
               
chrX:38006644-38007010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 81
               

               
Conread position:
               
148-499
               

               
Cow position:
               
chrX:42469815-42470179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 204
               

               
Conread position:
               
148-500
               

               
Cow position:
               
chrX:19690341-19689975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
138, 114
               

               
Conread position:
               
148-501
               

               
Cow position:
               
chrX:11073065-11073435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 227
               

               
Conread position:
               
148-509
               

               
Cow position:
               
chrX:17888297-17888658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
165, 72
               

               
Conread position:
               
150-499
               

               
Cow position:
               
chrX:35413734-35413388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
112, 76
               

               
Conread position:
               
154-450
               

               
Cow position:
               
chrX:47362503-47362802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
125, 156
               

               
Conread position:
               
155-481
               

               
Cow position:
               
chrX:17042800-17042466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
86, 6
               

               
Conread position:
               
155-498
               

               
Cow position:
               
chrX:24424282-24424630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
130, 117
               

               
Conread position:
               
158-488
               

               
Cow position:
               
chrX:37910561-37910222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
129, 230
               

               
Conread position:
               
161-450
               

               
Cow position:
               
chrX:23785759-23785463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
194, 26
               

               
Conread position:
               
161-497
               

               
Cow position:
               
chrX:7509252-7508897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 39
               

               
Conread position:
               
161-499
               

               
Cow position:
               
chrX:7572018-7571664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 207
               

               
Conread position:
               
161-499
               

               
Cow position:
               
chrX:11717670-11718022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
123, 254
               

               
Conread position:
               
161-499
               

               
Cow position:
               
chrX:38936813-38936459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
116, 199
               

               
Conread position:
               
161-500
               

               
Cow position:
               
chrX:10411873-10412229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
150, 118
               

               
Conread position:
               
166-497
               

               
Cow position:
               
chrX:23513909-23514258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 54
               

               
Conread position:
               
166-497
               

               
Cow position:
               
chrX:26625563-26625917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
167-493
               

               
Cow position:
               
chrX:7646358-7646022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
139, 96
               

               
Conread position:
               
168-493
               

               
Cow position:
               
chrX:15815190-15814861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
138, 99
               

               
Conread position:
               
168-493
               

               
Cow position:
               
chrX:47967714-47967363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
168-498
               

               
Cow position:
               
chrX:48652614-48652968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
172-499
               

               
Cow position:
               
chrX:2467986-2467638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
102, 344
               

               
Conread position:
               
173-498
               

               
Cow position:
               
chrX:27176212-27176561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
173-499
               

               
Cow position:
               
chrX:44736899-44737233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
111, 73
               

               
Conread position:
               
174-482
               

               
Cow position:
               
chrX:9041144-9041454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 28
               

               
Conread position:
               
174-483
               

               
Cow position:
               
chrX:4865333-4865025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
128, 55
               

               
Conread position:
               
174-491
               

               
Cow position:
               
chrX:11856530-11856195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
118, 291
               

               
Conread position:
               
174-491
               

               
Cow position:
               
chrX:13382424-13382090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
135, 30
               

               
Conread position:
               
174-497
               

               
Cow position:
               
chrX:35224396-35224062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 110
               

               
Conread position:
               
174-498
               

               
Cow position:
               
chrX:1514319-1514645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
137, 35
               

               
Conread position:
               
177-495
               

               
Cow position:
               
chrX:27680495-27680165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
177-497
               

               
Cow position:
               
chrX:42498951-42499269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
199, 34
               

               
Conread position:
               
178-492
               

               
Cow position:
               
chrX:3154147-3154481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 5
               

               
Conread position:
               
178-495
               

               
Cow position:
               
chrX:40480776-40481109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
94, 31
               

               
Conread position:
               
178-497
               

               
Cow position:
               
chrX:21004780-21004444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
178-499
               

               
Cow position:
               
chrX:23583657-23583316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
114, 93
               

               
Conread position:
               
178-499
               

               
Cow position:
               
chrX:29289674-29289334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
135, 93
               

               
Conread position:
               
178-499
               

               
Cow position:
               
chrX:38227013-38227332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
168, 32
               

               
Conread position:
               
178-499
               

               
Cow position:
               
chrX:43527604-43527261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
181-459
               

               
Cow position:
               
chrX:45149261-45148975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
169, 123
               

               
Conread position:
               
181-510
               

               
Cow position:
               
chrX:45403732-45404089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
183-489
               

               
Cow position:
               
chrX:6278407-6278738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
185-499
               

               
Cow position:
               
chrX:17542049-17541722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
99, 205
               

               
Conread position:
               
192-493
               

               
Cow position:
               
chrX:11589506-11589828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
111, 86
               

               
Conread position:
               
193-530
               

               
Cow position:
               
chrX:678474-678843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
67, 194
               

               
Conread position:
               
198-497
               

               
Cow position:
               
chrX:618926-619248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
198-498
               

               
Cow position:
               
chrX:34991115-34990800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 215
               

               
Conread position:
               
200-439
               

               
Cow position:
               
chrX:13785286-13785537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
83, 212
               

               
Conread position:
               
201-497
               

               
Cow position:
               
chrX:9855369-9855060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
211-488
               

               
Cow position:
               
chrX:14900670-14900952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
211-493
               

               
Cow position:
               
chrX:34192733-34192442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
64, 46
               

               
Conread position:
               
211-497
               

               
Cow position:
               
chrX:26875818-26876121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
72, 255
               

               
Conread position:
               
213-496
               

               
Cow position:
               
chrX:11675127-11674825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
214-494
               

               
Cow position:
               
chrX:27771906-27772193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
218-481
               

               
Cow position:
               
chrX:10437611-10437889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
230-482
               

               
Cow position:
               
chrX:4750258-4750523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
12, 213
               

               
Conread position:
               
230-497
               

               
Cow position:
               
chrX:9954183-9953901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
231-499
               

               
Cow position:
               
chrX:19015480-19015200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 186
               

               
Conread position:
               
232-487
               

               
Cow position:
               
chrX:16789813-16790067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
232-510
               

               
Cow position:
               
chrX:32127950-32128233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
235-497
               

               
Cow position:
               
chrX:23970418-23970149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
51, 169
               

               
Conread position:
               
242-499
               

               
Cow position:
               
chrX:11581965-11581692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
113, 140
               

               
Conread position:
               
243-499
               

               
Cow position:
               
chrX:20583051-20582788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 10
               

               
Conread position:
               
248-499
               

               
Cow position:
               
chrX:42585052-42585311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 183
               

               
Conread position:
               
251-498
               

               
Cow position:
               
chrX:8558432-8558704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
253-499
               

               
Cow position:
               
chrX:48371112-48370854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
253-499
               

               
Cow position:
               
chrX:48536659-48536908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
32, 60
               

               
Conread position:
               
253-549
               

               
Cow position:
               
chrX:6640127-6639834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
262-499
               

               
Cow position:
               
chrX:31473518-31473280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
127, 7
               

               
Conread position:
               
264-466
               

               
Cow position:
               
chrX:40567614-40567393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
265-457
               

               
Cow position:
               
chrX:40809689-40809489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
265-486
               

               
Cow position:
               
chrX:1728417-1728646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
269-485
               

               
Cow position:
               
chrX:4482963-4482734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
270-499
               

               
Cow position:
               
chrX:23061441-23061212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
275-500
               

               
Cow position:
               
chrX:48227626-48227858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
280-480
               

               
Cow position:
               
chrX:41342539-41342740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 184
               

               
Conread position:
               
281-495
               

               
Cow position:
               
chrX:42086851-42086624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
284-497
               

               
Cow position:
               
chrX:31745071-31745287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 28
               

               
Conread position:
               
295-498
               

               
Cow position:
               
chrX:40279789-40279580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
300-459
               

               
Cow position:
               
chrX:7336791-7336629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
55, 155
               

               
Conread position:
               
300-480
               

               
Cow position:
               
chrX:16541709-16541899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
301-490
               

               
Cow position:
               
chrX:12405422-12405602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
301-518
               

               
Cow position:
               
chrX:17744027-17743799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 196
               

               
Conread position:
               
301-521
               

               
Cow position:
               
chrX:11806052-11806284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
303-443
               

               
Cow position:
               
chrX:45759351-45759214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
303-446
               

               
Cow position:
               
chrX:31256825-31256681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
303-449
               

               
Cow position:
               
chrX:1505670-1505523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 127
               

               
Conread position:
               
303-457
               

               
Cow position:
               
chrX:36961602-36961438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
303-460
               

               
Cow position:
               
chrX:17908328-17908484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
303-460
               

               
Cow position:
               
chrX:43779887-43780053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
303-462
               

               
Cow position:
               
chrX:6234493-6234651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
303-466
               

               
Cow position:
               
chrX:46429899-46430064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
303-475
               

               
Cow position:
               
chrX:45015538-45015367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
303-477
               

               
Cow position:
               
chrX:42461785-42461966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
303-482
               

               
Cow position:
               
chrX:29509482-29509669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
303-484
               

               
Cow position:
               
chrX:48684266-48684450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
303-487
               

               
Cow position:
               
chrX:37048618-37048811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
303-489
               

               
Cow position:
               
chrX:33639932-33639739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
303-493
               

               
Cow position:
               
chrX:45412700-45412891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
303-494
               

               
Cow position:
               
chrX:17662634-17662834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
303-494
               

               
Cow position:
               
chrX:45113578-45113391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
303-495
               

               
Cow position:
               
chrX:9997376-9997571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
86, 105
               

               
Conread position:
               
303-495
               

               
Cow position:
               
chrX:44731557-44731356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chrX:10306634-10306430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chrX:12249761-12249565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chrX:16416467-16416268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chrX:33855274-33855473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chrX:41403938-41403735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
47, 184
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chrX:41410486-41410283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
47, 184
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chrX:43049308-43049106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 190
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chrX:44834850-44835056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
303-498
               

               
Cow position:
               
chrX:9416734-9416934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
303-498
               

               
Cow position:
               
chrX:25338144-25337938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
303-498
               

               
Cow position:
               
chrX:42282387-42282195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 42
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:1810201-1810403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:3654567-3654362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:4123797-4123593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
53, 93
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:14924960-14924758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:17498044-17497854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
159, 77
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:19188897-19188694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:21593247-21593041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:33020443-33020244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
88, 47
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:34401957-34401755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:35609948-35609744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:42874943-42874736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:42994572-42994372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:46722775-46722983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chrX:48195078-48195283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
303-507
               

               
Cow position:
               
chrX:25419198-25419409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 206
               

               
Conread position:
               
303-507
               

               
Cow position:
               
chrX:28878210-28878411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
51, 63
               

               
Conread position:
               
303-509
               

               
Cow position:
               
chrX:35284579-35284365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
303-510
               

               
Cow position:
               
chrX:2206591-2206797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 62
               

               
Conread position:
               
303-510
               

               
Cow position:
               
chrX:8797212-8796995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
303-510
               

               
Cow position:
               
chrX:25945873-25946089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
51, 209
               

               
Conread position:
               
303-518
               

               
Cow position:
               
chrX:40647945-40647718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 211
               

               
Conread position:
               
303-521
               

               
Cow position:
               
chrX:3653718-3653496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
304-426
               

               
Cow position:
               
chrX:41271249-41271374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
304-459
               

               
Cow position:
               
chrX:4091606-4091448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
304-466
               

               
Cow position:
               
chrX:45658121-45658279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
304-473
               

               
Cow position:
               
chrX:29770215-29770391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 164
               

               
Conread position:
               
304-477
               

               
Cow position:
               
chrX:24201145-24200972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 139
               

               
Conread position:
               
304-481
               

               
Cow position:
               
chrX:16324006-16324187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
304-482
               

               
Cow position:
               
chrX:20791860-20792043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
304-488
               

               
Cow position:
               
chrX:18456359-18456161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
304-489
               

               
Cow position:
               
chrX:2383447-2383257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
304-489
               

               
Cow position:
               
chrX:10302295-10302104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
304-489
               

               
Cow position:
               
chrX:36840834-36840641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 26
               

               
Conread position:
               
304-490
               

               
Cow position:
               
chrX:35681299-35681112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
304-491
               

               
Cow position:
               
chrX:877070-877257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
304-492
               

               
Cow position:
               
chrX:31260669-31260865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
304-493
               

               
Cow position:
               
chrX:20697646-20697844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
304-493
               

               
Cow position:
               
chrX:20752213-20752027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
304-494
               

               
Cow position:
               
chrX:2648395-2648587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
92, 100
               

               
Conread position:
               
304-494
               

               
Cow position:
               
chrX:40116379-40116188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 158
               

               
Conread position:
               
304-495
               

               
Cow position:
               
chrX:11562114-11561916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 165
               

               
Conread position:
               
304-497
               

               
Cow position:
               
chrX:754921-754718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
304-497
               

               
Cow position:
               
chrX:2029350-2029150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
304-497
               

               
Cow position:
               
chrX:8517827-8517636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
304-497
               

               
Cow position:
               
chrX:29032368-29032177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
304-498
               

               
Cow position:
               
chrX:25848870-25848678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
304-498
               

               
Cow position:
               
chrX:32743493-32743297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
304-498
               

               
Cow position:
               
chrX:40789167-40788962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
304-498
               

               
Cow position:
               
chrX:41743870-41743672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
304-498
               

               
Cow position:
               
chrX:47756970-47757170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:7806338-7806135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 12
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:8899988-8899782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:9161543-9161346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:12018250-12018033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:13868661-13868452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:14599491-14599291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
87, 162
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:26440820-26441022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:27106221-27106016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:27442597-27442797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:30162955-30162755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:33803048-33803255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:35042183-35041977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:35409616-35409426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
49, 28
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:36693194-36692993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:38967606-38967408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:39555871-39556059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:40452251-40452455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chrX:42460143-42459938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
304-505
               

               
Cow position:
               
chrX:39938565-39938764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
304-510
               

               
Cow position:
               
chrX:27516487-27516278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
304-510
               

               
Cow position:
               
chrX:28105878-28105667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 51
               

               
Conread position:
               
304-510
               

               
Cow position:
               
chrX:37836547-37836334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
51, 205
               

               
Conread position:
               
304-512
               

               
Cow position:
               
chrX:15329604-15329397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
158, 21
               

               
Conread position:
               
304-516
               

               
Cow position:
               
chrX:7497198-7496984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
83, 31
               

               
Conread position:
               
304-521
               

               
Cow position:
               
chrX:20376926-20376703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 203
               

               
Conread position:
               
304-527
               

               
Cow position:
               
chrX:24259625-24259848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
304-530
               

               
Cow position:
               
chrX:46315419-46315650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
84, 187
               

               
Conread position:
               
305-494
               

               
Cow position:
               
chrX:38439435-38439236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
305-497
               

               
Cow position:
               
chrX:20710032-20709830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
305-498
               

               
Cow position:
               
chrX:19930608-19930416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
305-499
               

               
Cow position:
               
chrX:2933681-2933480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
305-499
               

               
Cow position:
               
chrX:28845788-28845604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
305-499
               

               
Cow position:
               
chrX:45694059-45693864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
306-449
               

               
Cow position:
               
chrX:24149597-24149450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
306-452
               

               
Cow position:
               
chrX:37541081-37540932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
306-494
               

               
Cow position:
               
chrX:17964562-17964759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
306-499
               

               
Cow position:
               
chrX:25238130-25237936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
306-499
               

               
Cow position:
               
chrX:28157454-28157243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
306-499
               

               
Cow position:
               
chrX:37843679-37843478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
306-518
               

               
Cow position:
               
chrX:33466566-33466357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
308-480
               

               
Cow position:
               
chrX:6488531-6488363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
47, 87
               

               
Conread position:
               
309-466
               

               
Cow position:
               
chrX:26285934-26285773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
309-485
               

               
Cow position:
               
chrX:35925909-35925739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 16
               

               
Conread position:
               
309-486
               

               
Cow position:
               
chrX:13265670-13265849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
153, 68
               

               
Conread position:
               
309-487
               

               
Cow position:
               
chrX:21665639-21665823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
309-491
               

               
Cow position:
               
chrX:41199060-41198870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
309-494
               

               
Cow position:
               
chrX:11313830-11314015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 34
               

               
Conread position:
               
309-495
               

               
Cow position:
               
chrX:39546021-39546211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
309-497
               

               
Cow position:
               
chrX:7425422-7425224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
309-497
               

               
Cow position:
               
chrX:42011232-42011040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
71, 18
               

               
Conread position:
               
309-498
               

               
Cow position:
               
chrX:15139592-15139786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 147
               

               
Conread position:
               
309-498
               

               
Cow position:
               
chrX:28111460-28111265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
309-498
               

               
Cow position:
               
chrX:30832894-30833079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
75, 148
               

               
Conread position:
               
309-499
               

               
Cow position:
               
chrX:42587475-42587671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
309-499
               

               
Cow position:
               
chrX:47481755-47481556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
309-514
               

               
Cow position:
               
chrX:2300876-2300677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
152, 34
               

               
Conread position:
               
309-521
               

               
Cow position:
               
chrX:7718809-7718589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
56, 200
               

               
Conread position:
               
310-495
               

               
Cow position:
               
chrX:25713746-25713561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
310-497
               

               
Cow position:
               
chrX:42589804-42589998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 40
               

               
Conread position:
               
310-498
               

               
Cow position:
               
chrX:17630854-17631043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
71, 25
               

               
Conread position:
               
310-499
               

               
Cow position:
               
chrX:488444-488248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
310-499
               

               
Cow position:
               
chrX:3161060-3161258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
310-499
               

               
Cow position:
               
chrX:26883182-26883376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
311-490
               

               
Cow position:
               
chrX:42338991-42339169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
151, 39
               

               
Conread position:
               
311-495
               

               
Cow position:
               
chrX:19019155-19019348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
44, 179
               

               
Conread position:
               
311-495
               

               
Cow position:
               
chrX:41167013-41167202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
311-498
               

               
Cow position:
               
chrX:11982084-11981890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
94, 39
               

               
Conread position:
               
312-466
               

               
Cow position:
               
chrX:9425790-9425948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
33, 39
               

               
Conread position:
               
312-492
               

               
Cow position:
               
chrX:38071814-38072006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 112
               

               
Conread position:
               
312-495
               

               
Cow position:
               
chrX:20504706-20504528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
312-496
               

               
Cow position:
               
chrX:28632533-28632719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
150, 105
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chrX:30159056-30159253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 161
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chrX:34270352-34270171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chrX:34754237-34754434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chrX:37416122-37416317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 159
               

               
Conread position:
               
312-499
               

               
Cow position:
               
chrX:42855365-42855166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
312-501
               

               
Cow position:
               
chrX:36778362-36778162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
312-510
               

               
Cow position:
               
chrX:36249911-36250117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
312-570
               

               
Cow position:
               
chrX:46381826-46382088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
42, 76
               

               
Conread position:
               
313-473
               

               
Cow position:
               
chrX:25036746-25036917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
313-497
               

               
Cow position:
               
chrX:44053207-44053018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
313-499
               

               
Cow position:
               
chrX:32978308-32978498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
315-499
               

               
Cow position:
               
chrX:22538004-22538196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
316-494
               

               
Cow position:
               
chrX:28856919-28856740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
317-483
               

               
Cow position:
               
chrX:4942809-4942976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
145, 80
               

               
Conread position:
               
317-499
               

               
Cow position:
               
chrX:41238424-41238605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
12, 29
               

               
Conread position:
               
318-492
               

               
Cow position:
               
chrX:47191461-47191634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
143, 32
               

               
Conread position:
               
318-499
               

               
Cow position:
               
chrX:28098062-28097883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
320-499
               

               
Cow position:
               
chrX:6012162-6012349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
322-520
               

               
Cow position:
               
chrX:6643197-6642995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
323-499
               

               
Cow position:
               
chrX:24105567-24105384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
328-498
               

               
Cow position:
               
chrX:40544669-40544849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
328-499
               

               
Cow position:
               
chrX:33205060-33205234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
328-516
               

               
Cow position:
               
chrX:44908252-44908063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
331-499
               

               
Cow position:
               
chrX:41192617-41192448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 148
               

               
Conread position:
               
333-499
               

               
Cow position:
               
chrX:18293859-18293690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chrX:19290695-19290530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 128
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chrX:24317993-24317824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
334-500
               

               
Cow position:
               
chrX:16721875-16722045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
335-510
               

               
Cow position:
               
chrX:20976147-20976314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
336-499
               

               
Cow position:
               
chrX:42507720-42507889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
338-499
               

               
Cow position:
               
chrX:21795420-21795254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
339-495
               

               
Cow position:
               
chrX:37299523-37299358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
339-498
               

               
Cow position:
               
chrX:6607346-6607180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
340-497
               

               
Cow position:
               
chrX:160111-160273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
340-499
               

               
Cow position:
               
chrX:10916671-10916512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
122, 57
               

               
Conread position:
               
346-495
               

               
Cow position:
               
chrX:29049880-29049730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
116, 51
               

               
Conread position:
               
346-500
               

               
Cow position:
               
chrX:2523809-2523973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
347-499
               

               
Cow position:
               
chrX:26619446-26619605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
350-486
               

               
Cow position:
               
chrX:18812166-18812029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
350-488
               

               
Cow position:
               
chrX:5900367-5900226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
350-495
               

               
Cow position:
               
chrX:126703-126554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
350-495
               

               
Cow position:
               
chrX:14908930-14908778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
350-495
               

               
Cow position:
               
chrX:25283238-25283384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
112, 45
               

               
Conread position:
               
350-496
               

               
Cow position:
               
chrX:8492842-8492997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
350-498
               

               
Cow position:
               
chrX:37364653-37364506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
350-498
               

               
Cow position:
               
chrX:39346870-39347027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
350-499
               

               
Cow position:
               
chrX:6659291-6659131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
350-499
               

               
Cow position:
               
chrX:16531909-16531757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
350-499
               

               
Cow position:
               
chrX:45787563-45787412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
112, 32
               

               
Conread position:
               
350-511
               

               
Cow position:
               
chrX:42500403-42500240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
350-521
               

               
Cow position:
               
chrX:7382235-7382056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
351-491
               

               
Cow position:
               
chrX:23017917-23017771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
352-498
               

               
Cow position:
               
chrX:20168117-20167963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
355-499
               

               
Cow position:
               
chrX:47247005-47247151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 27
               

               
Conread position:
               
355-507
               

               
Cow position:
               
chrX:32870876-32871035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
360-530
               

               
Cow position:
               
chrX:33538849-33538678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
364-497
               

               
Cow position:
               
chrX:6764719-6764850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
364-499
               

               
Cow position:
               
chrX:32747553-32747416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
5, 14
               

               
Conread position:
               
365-495
               

               
Cow position:
               
chrX:45420772-45420911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
365-499
               

               
Cow position:
               
chrX:5856426-5856565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 101
               

               
Conread position:
               
376-497
               

               
Cow position:
               
chrX:33519500-33519377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
377-521
               

               
Cow position:
               
chrX:12096367-12096514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
85, 20
               

               
Conread position:
               
382-479
               

               
Cow position:
               
chrX:29193883-29193786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
21, 32
               

               
Conread position:
               
382-497
               

               
Cow position:
               
chrX:48578293-48578175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
383-500
               

               
Cow position:
               
chrX:2351940-2351819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
385-520
               

               
Cow position:
               
chrX:616530-616669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
12, 131
               

               
Conread position:
               
385-520
               

               
Cow position:
               
chrX:7710817-7710955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
385-548
               

               
Cow position:
               
chrX:919418-919583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
20, 88
               

               
Conread position:
               
391-521
               

               
Cow position:
               
chrX:9651177-9651312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 103
               

               
Conread position:
               
393-499
               

               
Cow position:
               
chrX:29723315-29723209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
397-497
               

               
Cow position:
               
chrX:45410179-45410282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               
Show alignments to all cow chromosomes.