Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8024K03.3 |
| Conread position: | 447-579 |
| Cow position: | chr11:897634-897767 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 447-579 |
| Cow position: | chr11:40608633-40608501 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 447-580 |
| Cow position: | chr11:62620337-62620471 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 447-589 |
| Cow position: | chr11:15382542-15382399 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 447-594 |
| Cow position: | chr11:17721841-17721693 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 448-579 |
| Cow position: | chr11:33409300-33409168 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-580 |
| Cow position: | chr11:17083348-17083215 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-581 |
| Cow position: | chr11:24599425-24599293 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 448-581 |
| Cow position: | chr11:48272162-48272296 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chr11:19606539-19606674 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chr11:21885795-21885929 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 92, 78 |
| Conread position: | 448-582 |
| Cow position: | chr11:28644049-28644184 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chr11:34646551-34646686 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chr11:35684539-35684404 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 448-584 |
| Cow position: | chr11:69119255-69119392 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-585 |
| Cow position: | chr11:30867145-30867283 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 448-585 |
| Cow position: | chr11:80564255-80564392 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 115 |
| Conread position: | 448-588 |
| Cow position: | chr11:53279750-53279613 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 98, 55 |
| Conread position: | 448-593 |
| Cow position: | chr11:29960260-29960404 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 98, 54 |
| Conread position: | 449-576 |
| Cow position: | chr11:28168460-28168332 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 449-594 |
| Cow position: | chr11:62789093-62789239 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 450-546 |
| Cow position: | chr11:54218678-54218774 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-575 |
| Cow position: | chr11:16342265-16342139 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-575 |
| Cow position: | chr11:20238640-20238766 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 450-575 |
| Cow position: | chr11:45435043-45435170 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 450-575 |
| Cow position: | chr11:80556187-80556309 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 9 |
| Conread position: | 450-576 |
| Cow position: | chr11:18851872-18851998 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 90, 82 |
| Conread position: | 450-576 |
| Cow position: | chr11:50152850-50152723 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-577 |
| Cow position: | chr11:17036564-17036436 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-577 |
| Cow position: | chr11:47545098-47545223 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 96, 53 |
| Conread position: | 450-579 |
| Cow position: | chr11:64406192-64406322 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-580 |
| Cow position: | chr11:63999124-63998997 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 26 |
| Conread position: | 450-580 |
| Cow position: | chr11:69977934-69978065 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-581 |
| Cow position: | chr11:2575940-2575808 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 450-581 |
| Cow position: | chr11:18447528-18447396 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-581 |
| Cow position: | chr11:34121162-34121294 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 95, 113 |
| Conread position: | 450-581 |
| Cow position: | chr11:35580223-35580356 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 450-581 |
| Cow position: | chr11:36329071-36328939 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chr11:39060638-39060507 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-581 |
| Cow position: | chr11:42160090-42159961 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 90, 51 |
| Conread position: | 450-581 |
| Cow position: | chr11:65767163-65767295 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr11:23128576-23128443 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr11:27248457-27248587 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 96, 53 |
| Conread position: | 450-582 |
| Cow position: | chr11:41293854-41293721 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr11:48295997-48296127 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 50 |
| Conread position: | 450-582 |
| Cow position: | chr11:52380908-52380775 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-584 |
| Cow position: | chr11:10213600-10213470 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 450-584 |
| Cow position: | chr11:38211609-38211744 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-584 |
| Cow position: | chr11:47772426-47772291 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-591 |
| Cow position: | chr11:11558135-11558280 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 450-594 |
| Cow position: | chr11:30830650-30830506 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 88, 135 |
| Conread position: | 450-594 |
| Cow position: | chr11:44031969-44032121 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 450-594 |
| Cow position: | chr11:62812986-62812840 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-594 |
| Cow position: | chr11:77319378-77319524 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 450-595 |
| Cow position: | chr11:16843020-16842879 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 450-610 |
| Cow position: | chr11:80820039-80819880 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 96, 60 |
| Conread position: | 451-554 |
| Cow position: | chr11:10620364-10620259 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 451-576 |
| Cow position: | chr11:13061271-13061144 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 451-582 |
| Cow position: | chr11:17676408-17676276 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 451-591 |
| Cow position: | chr11:63866694-63866552 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 452-575 |
| Cow position: | chr11:45646627-45646503 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 94, 64 |
| Conread position: | 452-582 |
| Cow position: | chr11:46922920-46922788 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 454-580 |
| Cow position: | chr11:30895036-30894909 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 454-594 |
| Cow position: | chr11:39499324-39499467 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 455-582 |
| Cow position: | chr11:34413371-34413243 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 456-582 |
| Cow position: | chr11:30493966-30494090 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 456-588 |
| Cow position: | chr11:53553188-53553318 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 456-594 |
| Cow position: | chr11:23586608-23586746 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 90, 129 |
| Conread position: | 457-580 |
| Cow position: | chr11:44636783-44636659 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 457-610 |
| Cow position: | chr11:30355029-30355184 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 459-591 |
| Cow position: | chr11:20205879-20205747 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 87, 125 |
Show alignments to all cow chromosomes.