Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8024K03.3 |
| Conread position: | 441-581 |
| Cow position: | chr16:40540310-40540446 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 442-582 |
| Cow position: | chr16:12324429-12324570 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 447-574 |
| Cow position: | chr16:21040006-21040134 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 447-575 |
| Cow position: | chr16:33235182-33235056 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 99, 56 |
| Conread position: | 447-582 |
| Cow position: | chr16:17903666-17903530 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 447-582 |
| Cow position: | chr16:40333345-40333211 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 447-591 |
| Cow position: | chr16:33645994-33646139 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 447-593 |
| Cow position: | chr16:12133839-12133988 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 447-594 |
| Cow position: | chr16:7723680-7723829 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 447-594 |
| Cow position: | chr16:24855522-24855667 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 101, 55 |
| Conread position: | 447-594 |
| Cow position: | chr16:25170372-25170522 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 447-594 |
| Cow position: | chr16:31117635-31117489 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 448-581 |
| Cow position: | chr16:32893608-32893742 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 448-581 |
| Cow position: | chr16:46433347-46433211 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 448-582 |
| Cow position: | chr16:3114519-3114654 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chr16:9553039-9553172 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 98, 42 |
| Conread position: | 448-582 |
| Cow position: | chr16:13989955-13990090 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 448-582 |
| Cow position: | chr16:31079111-31078976 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 448-582 |
| Cow position: | chr16:40514502-40514367 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chr16:47518825-47518961 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 448-582 |
| Cow position: | chr16:53792840-53792704 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 448-584 |
| Cow position: | chr16:33054501-33054364 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-594 |
| Cow position: | chr16:4059336-4059483 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 448-594 |
| Cow position: | chr16:9985413-9985265 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-594 |
| Cow position: | chr16:11135001-11134854 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-594 |
| Cow position: | chr16:47964839-47964691 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 449-594 |
| Cow position: | chr16:19003552-19003406 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 450-544 |
| Cow position: | chr16:19815265-19815171 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-573 |
| Cow position: | chr16:48398272-48398148 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-574 |
| Cow position: | chr16:26649647-26649522 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-575 |
| Cow position: | chr16:33226556-33226431 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 67 |
| Conread position: | 450-575 |
| Cow position: | chr16:39402032-39401908 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 450-576 |
| Cow position: | chr16:37401233-37401361 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 114 |
| Conread position: | 450-580 |
| Cow position: | chr16:8738047-8738178 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-580 |
| Cow position: | chr16:17460149-17460277 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 117 |
| Conread position: | 450-580 |
| Cow position: | chr16:45294526-45294661 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 450-580 |
| Cow position: | chr16:45677960-45678091 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 450-581 |
| Cow position: | chr16:13689648-13689780 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chr16:20824459-20824591 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chr16:21370205-21370076 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 450-581 |
| Cow position: | chr16:22919450-22919581 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 13 |
| Conread position: | 450-581 |
| Cow position: | chr16:37669755-37669623 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 450-581 |
| Cow position: | chr16:42078865-42078734 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 58 |
| Conread position: | 450-582 |
| Cow position: | chr16:1582944-1582810 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 450-582 |
| Cow position: | chr16:12010077-12010210 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 450-582 |
| Cow position: | chr16:16933100-16933234 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 114 |
| Conread position: | 450-582 |
| Cow position: | chr16:22207062-22207192 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 450-582 |
| Cow position: | chr16:40562214-40562346 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 96, 120 |
| Conread position: | 450-582 |
| Cow position: | chr16:42977447-42977581 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 122 |
| Conread position: | 450-582 |
| Cow position: | chr16:45122017-45122150 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr16:48340712-48340579 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-584 |
| Cow position: | chr16:5256978-5257113 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-584 |
| Cow position: | chr16:17288929-17289064 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-584 |
| Cow position: | chr16:27728241-27728377 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 450-590 |
| Cow position: | chr16:48006511-48006369 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-594 |
| Cow position: | chr16:17292040-17291897 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 96, 120 |
| Conread position: | 450-594 |
| Cow position: | chr16:30305830-30305688 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 53 |
| Conread position: | 450-594 |
| Cow position: | chr16:48956778-48956925 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 451-582 |
| Cow position: | chr16:11584421-11584290 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 451-594 |
| Cow position: | chr16:41578209-41578355 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 454-575 |
| Cow position: | chr16:11615259-11615137 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 454-582 |
| Cow position: | chr16:24591838-24591968 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 454-582 |
| Cow position: | chr16:25839606-25839735 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 454-582 |
| Cow position: | chr16:34220172-34220301 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 456-580 |
| Cow position: | chr16:24142971-24142846 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 56 |
| Conread position: | 456-582 |
| Cow position: | chr16:10504815-10504941 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 93, 71 |
| Conread position: | 456-594 |
| Cow position: | chr16:14376770-14376906 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 47 |
| Conread position: | 457-582 |
| Cow position: | chr16:31484673-31484546 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 111 |
| Conread position: | 462-582 |
| Cow position: | chr16:34205070-34204949 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 472-581 |
| Cow position: | chr16:41807098-41806988 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.