Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8024K03.3 |
| Conread position: | 426-594 |
| Cow position: | chr17:42697290-42697459 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 146 |
| Conread position: | 433-575 |
| Cow position: | chr17:18109543-18109401 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 113, 20 |
| Conread position: | 447-575 |
| Cow position: | chr17:1410219-1410091 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 121 |
| Conread position: | 447-575 |
| Cow position: | chr17:29995417-29995288 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 447-579 |
| Cow position: | chr17:11306228-11306361 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 447-581 |
| Cow position: | chr17:18473184-18473317 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 7 |
| Conread position: | 447-581 |
| Cow position: | chr17:43315267-43315135 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 38 |
| Conread position: | 447-582 |
| Cow position: | chr17:3577558-3577692 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 98, 114 |
| Conread position: | 447-582 |
| Cow position: | chr17:17044313-17044178 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 99, 116 |
| Conread position: | 447-582 |
| Cow position: | chr17:17059444-17059578 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 447-584 |
| Cow position: | chr17:15340735-15340595 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 447-584 |
| Cow position: | chr17:33658049-33657912 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 448-581 |
| Cow position: | chr17:4105973-4105840 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 448-581 |
| Cow position: | chr17:4121709-4121576 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 448-582 |
| Cow position: | chr17:5372507-5372372 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 448-582 |
| Cow position: | chr17:17034969-17035104 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chr17:25128333-25128198 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 448-582 |
| Cow position: | chr17:29157439-29157571 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 55 |
| Conread position: | 448-584 |
| Cow position: | chr17:39736196-39736331 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 39 |
| Conread position: | 448-590 |
| Cow position: | chr17:25473260-25473116 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-594 |
| Cow position: | chr17:21325352-21325500 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 448-594 |
| Cow position: | chr17:30728524-30728671 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 449-581 |
| Cow position: | chr17:24554017-24554150 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 449-582 |
| Cow position: | chr17:1025804-1025670 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 449-582 |
| Cow position: | chr17:12959127-12959261 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 449-582 |
| Cow position: | chr17:21039578-21039712 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 450-567 |
| Cow position: | chr17:11368827-11368710 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 99, 84 |
| Conread position: | 450-575 |
| Cow position: | chr17:24824264-24824390 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-578 |
| Cow position: | chr17:25901222-25901351 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-580 |
| Cow position: | chr17:32138402-32138271 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chr17:11478791-11478923 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chr17:12591191-12591328 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 450-581 |
| Cow position: | chr17:18848136-18848004 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 450-581 |
| Cow position: | chr17:29076061-29075930 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 113 |
| Conread position: | 450-581 |
| Cow position: | chr17:31037355-31037223 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chr17:42150413-42150545 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr17:1634470-1634337 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-582 |
| Cow position: | chr17:3153552-3153420 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 96, 82 |
| Conread position: | 450-582 |
| Cow position: | chr17:12325743-12325610 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr17:21114932-21114799 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr17:22017062-22016934 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 450-582 |
| Cow position: | chr17:34791043-34790909 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 450-584 |
| Cow position: | chr17:15102872-15102737 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-591 |
| Cow position: | chr17:908763-908905 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 450-594 |
| Cow position: | chr17:3388848-3388989 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 52 |
| Conread position: | 450-594 |
| Cow position: | chr17:4225477-4225337 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 450-594 |
| Cow position: | chr17:7810733-7810588 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 450-594 |
| Cow position: | chr17:7959202-7959348 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 450-594 |
| Cow position: | chr17:21003804-21003662 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 134, 53 |
| Conread position: | 450-594 |
| Cow position: | chr17:32419094-32418948 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 451-579 |
| Cow position: | chr17:37341014-37340879 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 451-580 |
| Cow position: | chr17:12536442-12536312 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 451-581 |
| Cow position: | chr17:11912480-11912349 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 451-581 |
| Cow position: | chr17:18934283-18934413 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 57 |
| Conread position: | 451-582 |
| Cow position: | chr17:5767930-5768059 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 95, 68 |
| Conread position: | 451-582 |
| Cow position: | chr17:32993600-32993469 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 451-582 |
| Cow position: | chr17:39606453-39606585 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 451-593 |
| Cow position: | chr17:21758118-21757976 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 134 |
| Conread position: | 452-579 |
| Cow position: | chr17:18109060-18108936 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 452-581 |
| Cow position: | chr17:32333067-32332937 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 452-582 |
| Cow position: | chr17:25800858-25800728 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 45, 92 |
| Conread position: | 453-582 |
| Cow position: | chr17:24587649-24587779 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 453-594 |
| Cow position: | chr17:11664560-11664414 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 454-582 |
| Cow position: | chr17:5423043-5422914 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 454-582 |
| Cow position: | chr17:23516916-23516788 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 116 |
| Conread position: | 454-582 |
| Cow position: | chr17:36330931-36330804 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 455-576 |
| Cow position: | chr17:1040772-1040893 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 91, 106 |
| Conread position: | 455-582 |
| Cow position: | chr17:32989504-32989631 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 14 |
| Conread position: | 455-594 |
| Cow position: | chr17:40276767-40276906 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 130 |
| Conread position: | 456-580 |
| Cow position: | chr17:9824697-9824822 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 456-582 |
| Cow position: | chr17:946385-946512 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 456-582 |
| Cow position: | chr17:33288629-33288502 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 457-582 |
| Cow position: | chr17:9713313-9713187 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 472-581 |
| Cow position: | chr17:21676934-21677044 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.