Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8024K03.3 |
| Conread position: | 425-582 |
| Cow position: | chr6:1866728-1866884 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 447-582 |
| Cow position: | chr6:65871055-65871190 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 85 |
| Conread position: | 447-594 |
| Cow position: | chr6:48097586-48097434 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 143 |
| Conread position: | 448-576 |
| Cow position: | chr6:1871179-1871050 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-576 |
| Cow position: | chr6:5609426-5609299 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 35 |
| Conread position: | 448-580 |
| Cow position: | chr6:61168774-61168907 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 448-581 |
| Cow position: | chr6:17414428-17414292 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 448-581 |
| Cow position: | chr6:21869630-21869496 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chr6:53090028-53090162 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 98, 122 |
| Conread position: | 448-582 |
| Cow position: | chr6:58597487-58597351 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-584 |
| Cow position: | chr6:47574925-47575062 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-585 |
| Cow position: | chr6:3351047-3351187 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-590 |
| Cow position: | chr6:17068629-17068484 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 449-576 |
| Cow position: | chr6:28999921-28999792 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 116 |
| Conread position: | 449-594 |
| Cow position: | chr6:15243275-15243422 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 450-539 |
| Cow position: | chr6:61608533-61608622 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 77 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-575 |
| Cow position: | chr6:32853209-32853334 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 54 |
| Conread position: | 450-575 |
| Cow position: | chr6:51581231-51581109 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 93, 49 |
| Conread position: | 450-575 |
| Cow position: | chr6:60350271-60350145 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-576 |
| Cow position: | chr6:21231545-21231673 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-579 |
| Cow position: | chr6:19264478-19264348 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-579 |
| Cow position: | chr6:43651773-43651903 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-580 |
| Cow position: | chr6:44194528-44194398 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-581 |
| Cow position: | chr6:2547276-2547408 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chr6:13687791-13687661 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 450-581 |
| Cow position: | chr6:23466012-23465881 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 95, 61 |
| Conread position: | 450-581 |
| Cow position: | chr6:29485103-29485236 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 450-581 |
| Cow position: | chr6:46860146-46860015 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 113 |
| Conread position: | 450-581 |
| Cow position: | chr6:51463612-51463481 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-581 |
| Cow position: | chr6:55282273-55282140 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 450-582 |
| Cow position: | chr6:10105958-10105825 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr6:34119332-34119200 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 96, 54 |
| Conread position: | 450-582 |
| Cow position: | chr6:50976069-50976204 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr6:57571500-57571633 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-582 |
| Cow position: | chr6:60516847-60516979 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 61 |
| Conread position: | 450-582 |
| Cow position: | chr6:61524184-61524051 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chr6:62056635-62056768 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-584 |
| Cow position: | chr6:36202842-36202977 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 96, 53 |
| Conread position: | 450-589 |
| Cow position: | chr6:2078794-2078652 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-589 |
| Cow position: | chr6:66375312-66375172 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-591 |
| Cow position: | chr6:30023906-30024047 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 137 |
| Conread position: | 450-594 |
| Cow position: | chr6:23696021-23696165 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 96, 138 |
| Conread position: | 450-594 |
| Cow position: | chr6:25615074-25614926 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 132 |
| Conread position: | 450-594 |
| Cow position: | chr6:46465842-46465988 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 450-597 |
| Cow position: | chr6:19259321-19259171 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-597 |
| Cow position: | chr6:53546056-53546204 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 451-571 |
| Cow position: | chr6:20097937-20097816 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 451-581 |
| Cow position: | chr6:63065848-63065982 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 451-591 |
| Cow position: | chr6:26915353-26915491 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 92, 52 |
| Conread position: | 451-594 |
| Cow position: | chr6:58725392-58725535 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 95, 60 |
| Conread position: | 451-610 |
| Cow position: | chr6:24031401-24031559 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 55 |
| Conread position: | 452-573 |
| Cow position: | chr6:32121930-32122053 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 453-584 |
| Cow position: | chr6:52478387-52478255 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 454-581 |
| Cow position: | chr6:8209579-8209453 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 454-582 |
| Cow position: | chr6:54990976-54990847 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 455-576 |
| Cow position: | chr6:59603182-59603060 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 455-589 |
| Cow position: | chr6:28977014-28976879 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 456-582 |
| Cow position: | chr6:24468369-24468242 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 457-582 |
| Cow position: | chr6:45690582-45690456 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 457-593 |
| Cow position: | chr6:38207462-38207328 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 104, 113 |
| Conread position: | 458-582 |
| Cow position: | chr6:46282975-46282850 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 459-594 |
| Cow position: | chr6:54349724-54349858 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 49 |
| Conread position: | 460-575 |
| Cow position: | chr6:23938091-23938207 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 469-582 |
| Cow position: | chr6:41657307-41657421 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 472-582 |
| Cow position: | chr6:28900369-28900480 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.