Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8024K03.3 |
| Conread position: | 446-596 |
| Cow position: | chrX:33855216-33855064 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 90 |
| Conread position: | 447-594 |
| Cow position: | chrX:12979829-12979680 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 448-572 |
| Cow position: | chrX:37574846-37574971 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-578 |
| Cow position: | chrX:22115311-22115180 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-580 |
| Cow position: | chrX:4289448-4289584 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 448-580 |
| Cow position: | chrX:40685322-40685189 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chrX:878374-878239 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chrX:8869396-8869260 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chrX:27668952-27668817 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chrX:31312035-31312170 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-582 |
| Cow position: | chrX:40532037-40531902 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 448-582 |
| Cow position: | chrX:42381106-42380971 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 448-594 |
| Cow position: | chrX:38642255-38642404 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 448-610 |
| Cow position: | chrX:20584334-20584497 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 449-580 |
| Cow position: | chrX:4616004-4615872 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 449-594 |
| Cow position: | chrX:34314033-34314178 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 450-567 |
| Cow position: | chrX:34532528-34532646 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-573 |
| Cow position: | chrX:27431910-27431786 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-580 |
| Cow position: | chrX:5118494-5118359 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 450-580 |
| Cow position: | chrX:34505041-34504910 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 72, 107 |
| Conread position: | 450-581 |
| Cow position: | chrX:2935965-2936097 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chrX:11326089-11325958 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-581 |
| Cow position: | chrX:14883948-14883815 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 450-581 |
| Cow position: | chrX:17725983-17726116 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 450-581 |
| Cow position: | chrX:19273699-19273567 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chrX:27306462-27306594 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-581 |
| Cow position: | chrX:29501873-29501744 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 450-581 |
| Cow position: | chrX:34837055-34836924 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 8 |
| Conread position: | 450-582 |
| Cow position: | chrX:6599774-6599641 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chrX:7695759-7695889 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 450-582 |
| Cow position: | chrX:11656089-11656222 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chrX:16984649-16984781 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 450-582 |
| Cow position: | chrX:22392976-22392844 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 102, 116 |
| Conread position: | 450-582 |
| Cow position: | chrX:29050258-29050389 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 96, 52 |
| Conread position: | 450-582 |
| Cow position: | chrX:38853206-38853341 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 450-582 |
| Cow position: | chrX:41192712-41192845 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-582 |
| Cow position: | chrX:41871075-41871208 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-582 |
| Cow position: | chrX:42927816-42927683 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 450-584 |
| Cow position: | chrX:1466170-1466305 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 450-587 |
| Cow position: | chrX:46429811-46429673 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 450-594 |
| Cow position: | chrX:43115159-43115304 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 49 |
| Conread position: | 450-610 |
| Cow position: | chrX:4466975-4467136 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 96, 138 |
| Conread position: | 451-573 |
| Cow position: | chrX:12082314-12082192 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 95, 53 |
| Conread position: | 451-581 |
| Cow position: | chrX:37781100-37780969 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 451-582 |
| Cow position: | chrX:27145613-27145745 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 451-584 |
| Cow position: | chrX:13177469-13177333 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 451-594 |
| Cow position: | chrX:34411855-34411998 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 134 |
| Conread position: | 451-594 |
| Cow position: | chrX:40269500-40269644 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 60, 134 |
| Conread position: | 452-582 |
| Cow position: | chrX:32208812-32208682 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 91, 82 |
| Conread position: | 453-582 |
| Cow position: | chrX:29467767-29467637 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 454-581 |
| Cow position: | chrX:16836274-16836149 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 86, 49 |
| Conread position: | 454-582 |
| Cow position: | chrX:31436486-31436615 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 454-594 |
| Cow position: | chrX:17794993-17795133 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 92, 130 |
| Conread position: | 455-582 |
| Cow position: | chrX:20957251-20957379 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 456-581 |
| Cow position: | chrX:9252149-9252023 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 456-581 |
| Cow position: | chrX:37232421-37232547 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 456-594 |
| Cow position: | chrX:34376956-34377096 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 458-582 |
| Cow position: | chrX:20583682-20583807 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 462-584 |
| Cow position: | chrX:20340623-20340500 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 467-575 |
| Cow position: | chrX:37072414-37072523 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 467-595 |
| Cow position: | chrX:32866900-32867030 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 477-582 |
| Cow position: | chrX:34991399-34991505 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.