Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8024P20.5.5 |
| Conread position: | 1-99 |
| Cow position: | chr5:61060010-61060108 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 92-325 |
| Cow position: | chr5:61061243-61061475 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 390-538 |
| Cow position: | chr5:61063890-61064038 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 128 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 531-684 |
| Cow position: | chr5:61065030-61065183 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 682-851 |
| Cow position: | chr5:61067501-61067670 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1090-1320 |
| Cow position: | chr5:61128688-61128923 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1091-1317 |
| Cow position: | chr5:61071696-61071922 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1119-1320 |
| Cow position: | chr5:60996363-60996564 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 1306-1442 |
| Cow position: | chr5:61072704-61072837 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1440-1564 |
| Cow position: | chr5:61073181-61073305 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1683-1879 |
| Cow position: | chr5:61078438-61078636 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1700-1879 |
| Cow position: | chr5:61004677-61004856 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1877-1966 |
| Cow position: | chr5:61078957-61079046 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 80 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1965-2123 |
| Cow position: | chr5:61006036-61006194 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1965-2131 |
| Cow position: | chr5:61080208-61080373 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 2185-2382 |
| Cow position: | chr5:61081721-61081918 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2198-2380 |
| Cow position: | chr5:61007370-61007549 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 142, 62 |
| Conread position: | 2376-2603 |
| Cow position: | chr5:61008606-61008833 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 2377-2603 |
| Cow position: | chr5:61087423-61087649 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2600-2821 |
| Cow position: | chr5:61010232-61010453 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 181, 167 |
| Conread position: | 2600-2821 |
| Cow position: | chr5:61088366-61088587 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2819-2949 |
| Cow position: | chr5:61088734-61088867 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 2945-3037 |
| Cow position: | chr5:61090251-61090343 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3105-3215 |
| Cow position: | chr5:61092888-61092998 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3247-3379 |
| Cow position: | chr5:61093850-61093988 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
Show alignments to all cow chromosomes.