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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8025P15.3
        

               
Conread position:
               
191-596
               

               
Cow position:
               
chr21:6316475-6316050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 48
               

               
Conread position:
               
192-388
               

               
Cow position:
               
chr21:37120946-37121142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
26, 172
               

               
Conread position:
               
192-686
               

               
Cow position:
               
chr21:33791112-33791610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
193-640
               

               
Cow position:
               
chr21:31576751-31576317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 12
               

               
Conread position:
               
195-638
               

               
Cow position:
               
chr21:8420880-8420461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
195-648
               

               
Cow position:
               
chr21:20262064-20262537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
196-522
               

               
Cow position:
               
chr21:44214392-44214048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
196-568
               

               
Cow position:
               
chr21:12301250-12301626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
16, 219
               

               
Conread position:
               
199-584
               

               
Cow position:
               
chr21:12461692-12462109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 259
               

               
Conread position:
               
200-642
               

               
Cow position:
               
chr21:47823007-47823468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 84
               

               
Conread position:
               
200-646
               

               
Cow position:
               
chr21:27229526-27229996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 114
               

               
Conread position:
               
201-406
               

               
Cow position:
               
chr21:8282518-8282321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
79, 139
               

               
Conread position:
               
201-426
               

               
Cow position:
               
chr21:7483100-7483324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
142, 33
               

               
Conread position:
               
201-473
               

               
Cow position:
               
chr21:11019635-11019362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
201-564
               

               
Cow position:
               
chr21:11675798-11676161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 237
               

               
Conread position:
               
201-575
               

               
Cow position:
               
chr21:31004419-31004814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 203
               

               
Conread position:
               
201-644
               

               
Cow position:
               
chr21:3254407-3253967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 146
               

               
Conread position:
               
201-673
               

               
Cow position:
               
chr21:33947000-33947471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
202-462
               

               
Cow position:
               
chr21:13358583-13358314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
90, 209
               

               
Conread position:
               
202-632
               

               
Cow position:
               
chr21:25286769-25286322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 112
               

               
Conread position:
               
202-640
               

               
Cow position:
               
chr21:9353702-9353245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 283
               

               
Conread position:
               
202-646
               

               
Cow position:
               
chr21:4099120-4098674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
202-661
               

               
Cow position:
               
chr21:6051778-6051290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
35, 249
               

               
Conread position:
               
203-347
               

               
Cow position:
               
chr21:34049325-34049469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
124, 71
               

               
Conread position:
               
203-618
               

               
Cow position:
               
chr21:21169235-21169667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
15, 215
               

               
Conread position:
               
203-649
               

               
Cow position:
               
chr21:45356087-45355632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 208
               

               
Conread position:
               
204-363
               

               
Cow position:
               
chr21:30149993-30150149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
204-366
               

               
Cow position:
               
chr21:12972748-12972913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 52
               

               
Conread position:
               
204-501
               

               
Cow position:
               
chr21:47715293-47715592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
79, 69
               

               
Conread position:
               
204-525
               

               
Cow position:
               
chr21:36371732-36371420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
204-534
               

               
Cow position:
               
chr21:21140760-21140439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
204-557
               

               
Cow position:
               
chr21:9939939-9940304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
204-591
               

               
Cow position:
               
chr21:6058397-6058785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
204-627
               

               
Cow position:
               
chr21:20426772-20426351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
204-628
               

               
Cow position:
               
chr21:44094015-44093596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 115
               

               
Conread position:
               
204-639
               

               
Cow position:
               
chr21:34564958-34565407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
204-640
               

               
Cow position:
               
chr21:46848862-46849318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 108
               

               
Conread position:
               
204-646
               

               
Cow position:
               
chr21:38901034-38900572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 106
               

               
Conread position:
               
204-648
               

               
Cow position:
               
chr21:45970908-45971361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
71, 115
               

               
Conread position:
               
205-366
               

               
Cow position:
               
chr21:30053168-30053332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
205-389
               

               
Cow position:
               
chr21:17806888-17807071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
205-402
               

               
Cow position:
               
chr21:27480695-27480498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
205-409
               

               
Cow position:
               
chr21:49654319-49654113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
98, 199
               

               
Conread position:
               
205-419
               

               
Cow position:
               
chr21:8671642-8671429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
153, 68
               

               
Conread position:
               
205-631
               

               
Cow position:
               
chr21:15741833-15742277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 206
               

               
Conread position:
               
205-639
               

               
Cow position:
               
chr21:33996980-33997416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 51
               

               
Conread position:
               
205-646
               

               
Cow position:
               
chr21:44754538-44754981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 117
               

               
Conread position:
               
205-648
               

               
Cow position:
               
chr21:33982544-33983013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
71, 216
               

               
Conread position:
               
205-651
               

               
Cow position:
               
chr21:34740096-34739643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 219
               

               
Conread position:
               
206-361
               

               
Cow position:
               
chr21:23974026-23974181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
206-544
               

               
Cow position:
               
chr21:41515044-41514706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 128
               

               
Conread position:
               
206-614
               

               
Cow position:
               
chr21:28211445-28211028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
206-631
               

               
Cow position:
               
chr21:33727211-33727647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
71, 84
               

               
Conread position:
               
206-632
               

               
Cow position:
               
chr21:17428747-17428316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 112
               

               
Conread position:
               
206-637
               

               
Cow position:
               
chr21:5898140-5898591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
206-638
               

               
Cow position:
               
chr21:38449183-38449645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
206-640
               

               
Cow position:
               
chr21:27863249-27863714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
11, 113
               

               
Conread position:
               
206-644
               

               
Cow position:
               
chr21:4281614-4282067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
69, 218
               

               
Conread position:
               
206-646
               

               
Cow position:
               
chr21:18379093-18378644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 168
               

               
Conread position:
               
207-345
               

               
Cow position:
               
chr21:44759924-44760064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 117
               

               
Conread position:
               
207-357
               

               
Cow position:
               
chr21:3043785-3043941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
207-524
               

               
Cow position:
               
chr21:31662248-31661927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
207-567
               

               
Cow position:
               
chr21:45923417-45923769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 24
               

               
Conread position:
               
207-616
               

               
Cow position:
               
chr21:25800644-25800238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
70, 39
               

               
Conread position:
               
207-632
               

               
Cow position:
               
chr21:5427195-5426759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
68, 213
               

               
Conread position:
               
207-632
               

               
Cow position:
               
chr21:32574970-32574546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
78, 223
               

               
Conread position:
               
207-632
               

               
Cow position:
               
chr21:48290809-48291219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
207-643
               

               
Cow position:
               
chr21:15911646-15911202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
207-646
               

               
Cow position:
               
chr21:3236771-3236331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
207-661
               

               
Cow position:
               
chr21:8207025-8206574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
68, 100
               

               
Conread position:
               
208-360
               

               
Cow position:
               
chr21:44220613-44220458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
208-621
               

               
Cow position:
               
chr21:4723729-4723304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 232
               

               
Conread position:
               
208-675
               

               
Cow position:
               
chr21:23587139-23586648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 211
               

               
Conread position:
               
208-707
               

               
Cow position:
               
chr21:25764883-25764371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
155, 222
               

               
Conread position:
               
209-378
               

               
Cow position:
               
chr21:26147325-26147151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
209-486
               

               
Cow position:
               
chr21:39509142-39509421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
147, 215
               

               
Conread position:
               
209-632
               

               
Cow position:
               
chr21:18941586-18942016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 109
               

               
Conread position:
               
209-632
               

               
Cow position:
               
chr21:22352989-22353417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 109
               

               
Conread position:
               
209-642
               

               
Cow position:
               
chr21:31662713-31662263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
209-644
               

               
Cow position:
               
chr21:13755028-13754605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
209-644
               

               
Cow position:
               
chr21:46241993-46242438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 115
               

               
Conread position:
               
210-381
               

               
Cow position:
               
chr21:41197806-41197971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
210-582
               

               
Cow position:
               
chr21:29978511-29978899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
210-656
               

               
Cow position:
               
chr21:24674962-24674542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
76, 192
               

               
Conread position:
               
211-509
               

               
Cow position:
               
chr21:23397607-23397908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
148, 45
               

               
Conread position:
               
211-560
               

               
Cow position:
               
chr21:2658048-2657705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 43
               

               
Conread position:
               
211-640
               

               
Cow position:
               
chr21:23800888-23801316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
211-657
               

               
Cow position:
               
chr21:40134410-40133943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
82, 228
               

               
Conread position:
               
212-597
               

               
Cow position:
               
chr21:46607349-46607735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
65, 96
               

               
Conread position:
               
212-661
               

               
Cow position:
               
chr21:4276359-4276810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 105
               

               
Conread position:
               
215-638
               

               
Cow position:
               
chr21:21223522-21223097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 149
               

               
Conread position:
               
215-646
               

               
Cow position:
               
chr21:30848688-30849140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
60, 98
               

               
Conread position:
               
216-387
               

               
Cow position:
               
chr21:23397425-23397598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
216-496
               

               
Cow position:
               
chr21:15239517-15239238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
216-638
               

               
Cow position:
               
chr21:38121338-38120914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
217-551
               

               
Cow position:
               
chr21:49649855-49649529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
241, 32
               

               
Conread position:
               
217-646
               

               
Cow position:
               
chr21:41956943-41957375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
218-599
               

               
Cow position:
               
chr21:45920821-45921212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
220-421
               

               
Cow position:
               
chr21:19859934-19860137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
221-632
               

               
Cow position:
               
chr21:396103-395689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
222-621
               

               
Cow position:
               
chr21:12087830-12087419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 168
               

               
Conread position:
               
224-480
               

               
Cow position:
               
chr21:8184519-8184256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
224-645
               

               
Cow position:
               
chr21:31691723-31691277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 22
               

               
Conread position:
               
225-647
               

               
Cow position:
               
chr21:34237608-34237193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
12, 98
               

               
Conread position:
               
226-648
               

               
Cow position:
               
chr21:49699817-49700239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
229-494
               

               
Cow position:
               
chr21:37718221-37718485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 127
               

               
Conread position:
               
232-648
               

               
Cow position:
               
chr21:22718565-22718984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
234-380
               

               
Cow position:
               
chr21:18782453-18782309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
234-661
               

               
Cow position:
               
chr21:35997394-35996956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 177
               

               
Conread position:
               
238-426
               

               
Cow position:
               
chr21:26753709-26753516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
243-412
               

               
Cow position:
               
chr21:13418021-13418191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
244-621
               

               
Cow position:
               
chr21:32339527-32339912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 58
               

               
Conread position:
               
246-648
               

               
Cow position:
               
chr21:13089263-13089685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
248-646
               

               
Cow position:
               
chr21:44515467-44515073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
249-395
               

               
Cow position:
               
chr21:13256306-13256452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
35, 72
               

               
Conread position:
               
251-661
               

               
Cow position:
               
chr21:13584857-13585274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
252-618
               

               
Cow position:
               
chr21:13365545-13365172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
252-627
               

               
Cow position:
               
chr21:44825686-44826061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
252-655
               

               
Cow position:
               
chr21:18779773-18780180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
253-654
               

               
Cow position:
               
chr21:9990712-9990305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
254-647
               

               
Cow position:
               
chr21:36297693-36297277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
10, 29
               

               
Conread position:
               
254-648
               

               
Cow position:
               
chr21:16166437-16166836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 51
               

               
Conread position:
               
256-395
               

               
Cow position:
               
chr21:23768070-23767927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
256-640
               

               
Cow position:
               
chr21:4400000-4399604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
256-653
               

               
Cow position:
               
chr21:23786231-23785824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 173
               

               
Conread position:
               
256-657
               

               
Cow position:
               
chr21:34160148-34159748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
257-601
               

               
Cow position:
               
chr21:32297321-32297666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
257-618
               

               
Cow position:
               
chr21:27145791-27146164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
12, 8
               

               
Conread position:
               
259-625
               

               
Cow position:
               
chr21:17184115-17183741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
5, 44
               

               
Conread position:
               
259-640
               

               
Cow position:
               
chr21:28997709-28998101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
259-646
               

               
Cow position:
               
chr21:28626433-28626040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
261-383
               

               
Cow position:
               
chr21:9588418-9588298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
261-399
               

               
Cow position:
               
chr21:37848419-37848276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
263-621
               

               
Cow position:
               
chr21:18790373-18790731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 77
               

               
Conread position:
               
263-632
               

               
Cow position:
               
chr21:17193556-17193947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 38
               

               
Conread position:
               
263-632
               

               
Cow position:
               
chr21:33264035-33263661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
263-640
               

               
Cow position:
               
chr21:3360824-3361209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
36, 6
               

               
Conread position:
               
263-642
               

               
Cow position:
               
chr21:3585174-3585553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
16, 162
               

               
Conread position:
               
263-648
               

               
Cow position:
               
chr21:37299655-37299262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 38
               

               
Conread position:
               
264-546
               

               
Cow position:
               
chr21:31200351-31200073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
169, 118
               

               
Conread position:
               
266-629
               

               
Cow position:
               
chr21:15611331-15610971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
269-648
               

               
Cow position:
               
chr21:20160862-20160481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
271-629
               

               
Cow position:
               
chr21:37344916-37345286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 136
               

               
Conread position:
               
271-631
               

               
Cow position:
               
chr21:32559180-32559540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
272-648
               

               
Cow position:
               
chr21:5153803-5153414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
273-637
               

               
Cow position:
               
chr21:17642803-17643162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
273-647
               

               
Cow position:
               
chr21:44671927-44671551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
275-621
               

               
Cow position:
               
chr21:33563183-33562840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
276-457
               

               
Cow position:
               
chr21:1885611-1885793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
73, 136
               

               
Conread position:
               
276-632
               

               
Cow position:
               
chr21:13127919-13128278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
276-648
               

               
Cow position:
               
chr21:41974198-41974582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
276-651
               

               
Cow position:
               
chr21:47763938-47764318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
277-588
               

               
Cow position:
               
chr21:41583448-41583127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
128, 75
               

               
Conread position:
               
277-646
               

               
Cow position:
               
chr21:24714811-24714452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 52
               

               
Conread position:
               
278-628
               

               
Cow position:
               
chr21:28989791-28989433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
278-632
               

               
Cow position:
               
chr21:42053102-42053452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 94
               

               
Conread position:
               
278-638
               

               
Cow position:
               
chr21:16270879-16270539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
326, 76
               

               
Conread position:
               
278-645
               

               
Cow position:
               
chr21:45329772-45330140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 83
               

               
Conread position:
               
278-648
               

               
Cow position:
               
chr21:19258996-19258623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
279-591
               

               
Cow position:
               
chr21:957847-957521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
279-592
               

               
Cow position:
               
chr21:10004709-10005032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
279-600
               

               
Cow position:
               
chr21:26245091-26244777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-605
               

               
Cow position:
               
chr21:10633464-10633800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
279-605
               

               
Cow position:
               
chr21:24642689-24642359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
279-610
               

               
Cow position:
               
chr21:10114158-10114493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
279-612
               

               
Cow position:
               
chr21:28244647-28244310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-614
               

               
Cow position:
               
chr21:10001252-10000912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-618
               

               
Cow position:
               
chr21:26647839-26648178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
279-621
               

               
Cow position:
               
chr21:28191209-28190853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
56, 128
               

               
Conread position:
               
279-626
               

               
Cow position:
               
chr21:802140-802475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-628
               

               
Cow position:
               
chr21:7581728-7582092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-632
               

               
Cow position:
               
chr21:28924286-28923939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-632
               

               
Cow position:
               
chr21:29069149-29069516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-632
               

               
Cow position:
               
chr21:40589305-40589670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-638
               

               
Cow position:
               
chr21:10264209-10263850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
279-639
               

               
Cow position:
               
chr21:641764-641390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-641
               

               
Cow position:
               
chr21:42135439-42135820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
49, 135
               

               
Conread position:
               
279-642
               

               
Cow position:
               
chr21:23321901-23322278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-645
               

               
Cow position:
               
chr21:643500-643137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
279-645
               

               
Cow position:
               
chr21:14760742-14760380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-645
               

               
Cow position:
               
chr21:36795780-36795402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 151
               

               
Conread position:
               
279-645
               

               
Cow position:
               
chr21:44251666-44252026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chr21:23478555-23478920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 76
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chr21:24698657-24698288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 160
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chr21:27521163-27521526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chr21:28443206-28443580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
171, 22
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chr21:34010221-34010591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
279-647
               

               
Cow position:
               
chr21:34654250-34653882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-647
               

               
Cow position:
               
chr21:41597988-41597613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr21:24858492-24858108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr21:27568996-27569361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 127
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr21:33350918-33350539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr21:38918375-38918012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 23
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr21:41156045-41155659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
279-656
               

               
Cow position:
               
chr21:33896-33510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-656
               

               
Cow position:
               
chr21:24759221-24758858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 76
               

               
Conread position:
               
279-661
               

               
Cow position:
               
chr21:3818385-3818000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
279-661
               

               
Cow position:
               
chr21:25383203-25382793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
49, 268
               

               
Conread position:
               
279-661
               

               
Cow position:
               
chr21:29485155-29484768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-666
               

               
Cow position:
               
chr21:15976809-15976424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
26, 19
               

               
Conread position:
               
279-692
               

               
Cow position:
               
chr21:47464942-47465362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 129
               

               
Conread position:
               
280-628
               

               
Cow position:
               
chr21:35897451-35897808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
280-632
               

               
Cow position:
               
chr21:36819052-36819400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 134
               

               
Conread position:
               
280-660
               

               
Cow position:
               
chr21:1059251-1058862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
281-648
               

               
Cow position:
               
chr21:42413922-42414305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 20
               

               
Conread position:
               
284-617
               

               
Cow position:
               
chr21:8235390-8235716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 17
               

               
Conread position:
               
284-639
               

               
Cow position:
               
chr21:42841425-42841785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 139
               

               
Conread position:
               
284-645
               

               
Cow position:
               
chr21:23672917-23672544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
285-589
               

               
Cow position:
               
chr21:32903984-32904287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 128
               

               
Conread position:
               
285-640
               

               
Cow position:
               
chr21:41621296-41620924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
287-645
               

               
Cow position:
               
chr21:2679717-2679352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
288-639
               

               
Cow position:
               
chr21:31253701-31253341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
292-625
               

               
Cow position:
               
chr21:37845599-37845928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 93
               

               
Conread position:
               
292-654
               

               
Cow position:
               
chr21:24865307-24864945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
293-647
               

               
Cow position:
               
chr21:42540058-42540422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
8, 65
               

               
Conread position:
               
294-628
               

               
Cow position:
               
chr21:30592147-30592485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 72
               

               
Conread position:
               
294-630
               

               
Cow position:
               
chr21:45473596-45473943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
294-637
               

               
Cow position:
               
chr21:45850544-45850902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
294-648
               

               
Cow position:
               
chr21:6834210-6833849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
294-656
               

               
Cow position:
               
chr21:12801585-12801955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
294-673
               

               
Cow position:
               
chr21:30990125-30990497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
295-578
               

               
Cow position:
               
chr21:37886564-37886278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
161, 53
               

               
Conread position:
               
295-637
               

               
Cow position:
               
chr21:37941522-37941879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
295-640
               

               
Cow position:
               
chr21:10867034-10866680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
114, 79
               

               
Conread position:
               
295-642
               

               
Cow position:
               
chr21:24944734-24945093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 143
               

               
Conread position:
               
296-632
               

               
Cow position:
               
chr21:23499668-23500008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 110
               

               
Conread position:
               
297-638
               

               
Cow position:
               
chr21:26097246-26097603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
298-645
               

               
Cow position:
               
chr21:41878628-41878276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
8, 36
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr21:5567144-5566802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 132
               

               
Conread position:
               
299-632
               

               
Cow position:
               
chr21:22861158-22860815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
66, 109
               

               
Conread position:
               
299-646
               

               
Cow position:
               
chr21:28733755-28734113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
299-648
               

               
Cow position:
               
chr21:9416409-9416039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
299-648
               

               
Cow position:
               
chr21:42384666-42384302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
6, 155
               

               
Conread position:
               
299-650
               

               
Cow position:
               
chr21:41579914-41579546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 143
               

               
Conread position:
               
299-674
               

               
Cow position:
               
chr21:11644808-11645198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
9, 125
               

               
Conread position:
               
300-616
               

               
Cow position:
               
chr21:713100-712764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
6, 230
               

               
Conread position:
               
300-656
               

               
Cow position:
               
chr21:28955658-28955311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
6, 58
               

               
Conread position:
               
300-661
               

               
Cow position:
               
chr21:14452391-14452017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 117
               

               
Conread position:
               
300-662
               

               
Cow position:
               
chr21:37706258-37706626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
6, 95
               

               
Conread position:
               
301-578
               

               
Cow position:
               
chr21:20575320-20575596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 90
               

               
Conread position:
               
301-659
               

               
Cow position:
               
chr21:35062237-35061874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 132
               

               
Conread position:
               
303-645
               

               
Cow position:
               
chr21:30897567-30897219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
50, 122
               

               
Conread position:
               
303-646
               

               
Cow position:
               
chr21:37282453-37282108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
15, 121
               

               
Conread position:
               
303-648
               

               
Cow position:
               
chr21:23535862-23535510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 119
               

               
Conread position:
               
303-660
               

               
Cow position:
               
chr21:26742449-26742803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
304-648
               

               
Cow position:
               
chr21:10151957-10151592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 241
               

               
Conread position:
               
304-648
               

               
Cow position:
               
chr21:39401742-39401397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 30
               

               
Conread position:
               
305-621
               

               
Cow position:
               
chr21:19363309-19363639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
305-639
               

               
Cow position:
               
chr21:1591705-1591357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
305-646
               

               
Cow position:
               
chr21:24888149-24887808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
305-647
               

               
Cow position:
               
chr21:82218-81868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
305-648
               

               
Cow position:
               
chr21:45330456-45330811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
306-610
               

               
Cow position:
               
chr21:16982025-16981719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
12, 137
               

               
Conread position:
               
306-630
               

               
Cow position:
               
chr21:18842087-18842423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
306-638
               

               
Cow position:
               
chr21:13738702-13738378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
306-666
               

               
Cow position:
               
chr21:18850074-18850442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 121
               

               
Conread position:
               
307-649
               

               
Cow position:
               
chr21:34390826-34391172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
307-657
               

               
Cow position:
               
chr21:30606937-30607299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
21, 125
               

               
Conread position:
               
308-648
               

               
Cow position:
               
chr21:43357108-43357462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 128
               

               
Conread position:
               
311-567
               

               
Cow position:
               
chr21:36789940-36789672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 115
               

               
Conread position:
               
314-648
               

               
Cow position:
               
chr21:47760910-47760574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
315-657
               

               
Cow position:
               
chr21:18828161-18828521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 276
               

               
Conread position:
               
316-606
               

               
Cow position:
               
chr21:38483045-38482762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
316-620
               

               
Cow position:
               
chr21:27344268-27344577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 112
               

               
Conread position:
               
316-632
               

               
Cow position:
               
chr21:39075570-39075896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 294
               

               
Conread position:
               
319-617
               

               
Cow position:
               
chr21:29214023-29214320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
319-649
               

               
Cow position:
               
chr21:8549818-8549477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
323-646
               

               
Cow position:
               
chr21:724752-725093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
5, 94
               

               
Conread position:
               
323-656
               

               
Cow position:
               
chr21:20999896-21000237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
324-639
               

               
Cow position:
               
chr21:28993490-28993820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
325-578
               

               
Cow position:
               
chr21:37355807-37355549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 140
               

               
Conread position:
               
327-632
               

               
Cow position:
               
chr21:22856346-22856029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
327-644
               

               
Cow position:
               
chr21:16187679-16187999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 97
               

               
Conread position:
               
327-648
               

               
Cow position:
               
chr21:9202305-9201986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
334-644
               

               
Cow position:
               
chr21:18844891-18845214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
343-563
               

               
Cow position:
               
chr21:6621211-6621441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
110, 63
               

               
Conread position:
               
350-648
               

               
Cow position:
               
chr21:30231593-30231906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
106, 76
               

               
Conread position:
               
352-683
               

               
Cow position:
               
chr21:10601277-10601602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
356-647
               

               
Cow position:
               
chr21:24131164-24130879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
357-641
               

               
Cow position:
               
chr21:39450067-39450364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
94, 69
               

               
Conread position:
               
357-661
               

               
Cow position:
               
chr21:5426074-5425763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
358-660
               

               
Cow position:
               
chr21:12960805-12961114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
359-631
               

               
Cow position:
               
chr21:3813391-3813669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
104, 58
               

               
Conread position:
               
359-640
               

               
Cow position:
               
chr21:5597244-5596951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
359-642
               

               
Cow position:
               
chr21:17674141-17674433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
359-645
               

               
Cow position:
               
chr21:3920868-3921143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
182, 57
               

               
Conread position:
               
359-646
               

               
Cow position:
               
chr21:30150171-30150471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
359-648
               

               
Cow position:
               
chr21:39888657-39888947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
359-648
               

               
Cow position:
               
chr21:47802167-47802463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
359-651
               

               
Cow position:
               
chr21:3380986-3381287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
359-654
               

               
Cow position:
               
chr21:24222445-24222747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 118
               

               
Conread position:
               
359-656
               

               
Cow position:
               
chr21:10118651-10118342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
360-648
               

               
Cow position:
               
chr21:13048102-13048399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
360-648
               

               
Cow position:
               
chr21:37480046-37479753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
126, 43
               

               
Conread position:
               
361-642
               

               
Cow position:
               
chr21:8351221-8351501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
184, 57
               

               
Conread position:
               
361-648
               

               
Cow position:
               
chr21:24607476-24607182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
362-648
               

               
Cow position:
               
chr21:19436025-19436320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
364-640
               

               
Cow position:
               
chr21:28882225-28881947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
364-648
               

               
Cow position:
               
chr21:23192425-23192721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
365-645
               

               
Cow position:
               
chr21:13898274-13897991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 55
               

               
Conread position:
               
366-656
               

               
Cow position:
               
chr21:3047762-3047475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
368-621
               

               
Cow position:
               
chr21:49662038-49662292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 68
               

               
Conread position:
               
368-656
               

               
Cow position:
               
chr21:7156844-7156540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
373-648
               

               
Cow position:
               
chr21:32665697-32665975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
102, 62
               

               
Conread position:
               
374-641
               

               
Cow position:
               
chr21:29943081-29942810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
374-683
               

               
Cow position:
               
chr21:2785699-2786017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
375-589
               

               
Cow position:
               
chr21:33392135-33391919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
376-638
               

               
Cow position:
               
chr21:44804197-44804454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
165, 37
               

               
Conread position:
               
376-639
               

               
Cow position:
               
chr21:39765920-39765655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 56
               

               
Conread position:
               
378-627
               

               
Cow position:
               
chr21:46829205-46829451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
378-645
               

               
Cow position:
               
chr21:31676572-31676298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
380-661
               

               
Cow position:
               
chr21:34053122-34053403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
383-632
               

               
Cow position:
               
chr21:8289562-8289828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
383-639
               

               
Cow position:
               
chr21:42459468-42459741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
88, 45
               

               
Conread position:
               
386-648
               

               
Cow position:
               
chr21:21216076-21216344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
386-660
               

               
Cow position:
               
chr21:29247794-29248059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
85, 19
               

               
Conread position:
               
403-632
               

               
Cow position:
               
chr21:23449626-23449386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
405-645
               

               
Cow position:
               
chr21:394072-393821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
407-656
               

               
Cow position:
               
chr21:28944319-28944577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
408-648
               

               
Cow position:
               
chr21:8985592-8985346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
408-686
               

               
Cow position:
               
chr21:37361429-37361710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
410-570
               

               
Cow position:
               
chr21:4568328-4568161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 69
               

               
Conread position:
               
410-646
               

               
Cow position:
               
chr21:40058850-40058605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
410-648
               

               
Cow position:
               
chr21:48107822-48108070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
411-641
               

               
Cow position:
               
chr21:35569330-35569580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 144
               

               
Conread position:
               
413-650
               

               
Cow position:
               
chr21:911923-912171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
10, 243
               

               
Conread position:
               
414-646
               

               
Cow position:
               
chr21:39641582-39641341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
415-648
               

               
Cow position:
               
chr21:7132426-7132665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
62, 102
               

               
Conread position:
               
420-667
               

               
Cow position:
               
chr21:24765326-24765058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
424-666
               

               
Cow position:
               
chr21:36657589-36657353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
155, 71
               

               
Conread position:
               
425-645
               

               
Cow position:
               
chr21:42145944-42145716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 159
               

               
Conread position:
               
425-648
               

               
Cow position:
               
chr21:42913714-42913949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
425-650
               

               
Cow position:
               
chr21:34347038-34346802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
428-631
               

               
Cow position:
               
chr21:665099-665300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
429-661
               

               
Cow position:
               
chr21:20910069-20910307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 114
               

               
Conread position:
               
432-640
               

               
Cow position:
               
chr21:17410633-17410854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 183
               

               
Conread position:
               
432-648
               

               
Cow position:
               
chr21:17433236-17433458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
433-640
               

               
Cow position:
               
chr21:18935782-18935566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
434-640
               

               
Cow position:
               
chr21:23150000-23150214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 130
               

               
Conread position:
               
434-658
               

               
Cow position:
               
chr21:24598677-24598446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
435-648
               

               
Cow position:
               
chr21:13409803-13410026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
435-648
               

               
Cow position:
               
chr21:28429464-28429246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
435-649
               

               
Cow position:
               
chr21:44331273-44331489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
51, 181
               

               
Conread position:
               
437-647
               

               
Cow position:
               
chr21:42348655-42348880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
438-640
               

               
Cow position:
               
chr21:12366400-12366192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
438-640
               

               
Cow position:
               
chr21:28442760-28442549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
438-652
               

               
Cow position:
               
chr21:9710692-9710911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
439-577
               

               
Cow position:
               
chr21:40312783-40312933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
439-621
               

               
Cow position:
               
chr21:24081849-24082024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
173, 20
               

               
Conread position:
               
447-628
               

               
Cow position:
               
chr21:45623262-45623450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
448-713
               

               
Cow position:
               
chr21:17218616-17218889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
452-632
               

               
Cow position:
               
chr21:42024120-42023938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
452-656
               

               
Cow position:
               
chr21:29002160-29002373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
453-632
               

               
Cow position:
               
chr21:28907656-28907831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
170, 8
               

               
Conread position:
               
455-622
               

               
Cow position:
               
chr21:19936939-19937109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
455-627
               

               
Cow position:
               
chr21:13488517-13488337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
455-631
               

               
Cow position:
               
chr21:45151624-45151809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
455-632
               

               
Cow position:
               
chr21:18494964-18494779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
455-632
               

               
Cow position:
               
chr21:26645662-26645838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
455-632
               

               
Cow position:
               
chr21:28027802-28027616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
455-633
               

               
Cow position:
               
chr21:4268871-4268685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
18, 127
               

               
Conread position:
               
455-638
               

               
Cow position:
               
chr21:5636723-5636914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 125
               

               
Conread position:
               
455-638
               

               
Cow position:
               
chr21:33210197-33210005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
455-647
               

               
Cow position:
               
chr21:28512524-28512330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr21:3498493-3498295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 102
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr21:13035049-13035252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr21:16612619-16612426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
24, 97
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr21:20925511-20925709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr21:25127597-25127405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
455-661
               

               
Cow position:
               
chr21:8618272-8618058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
457-640
               

               
Cow position:
               
chr21:3239295-3239110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
459-658
               

               
Cow position:
               
chr21:21919832-21919627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
459-671
               

               
Cow position:
               
chr21:22722486-22722702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
461-625
               

               
Cow position:
               
chr21:29252906-29253069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
461-683
               

               
Cow position:
               
chr21:10107088-10106865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 7
               

               
Conread position:
               
462-646
               

               
Cow position:
               
chr21:38692171-38691989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
463-648
               

               
Cow position:
               
chr21:7716800-7716994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
464-663
               

               
Cow position:
               
chr21:41458453-41458654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
466-628
               

               
Cow position:
               
chr21:1511049-1510890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
156, 75
               

               
Conread position:
               
468-593
               

               
Cow position:
               
chr21:32191443-32191313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
468-627
               

               
Cow position:
               
chr21:23550302-23550145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
468-629
               

               
Cow position:
               
chr21:33955666-33955502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
468-643
               

               
Cow position:
               
chr21:8219834-8219657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
468-656
               

               
Cow position:
               
chr21:38908547-38908361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
468-700
               

               
Cow position:
               
chr21:5635023-5634792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
469-632
               

               
Cow position:
               
chr21:27089825-27089989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
469-648
               

               
Cow position:
               
chr21:3614332-3614156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
51, 62
               

               
Conread position:
               
470-632
               

               
Cow position:
               
chr21:25819278-25819121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
152, 9
               

               
Conread position:
               
470-646
               

               
Cow position:
               
chr21:30859347-30859172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
471-618
               

               
Cow position:
               
chr21:41430044-41429894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
471-646
               

               
Cow position:
               
chr21:41040847-41040666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
471-648
               

               
Cow position:
               
chr21:31159239-31159052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
471-682
               

               
Cow position:
               
chr21:18978874-18979080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
471-683
               

               
Cow position:
               
chr21:21411433-21411639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 8
               

               
Conread position:
               
473-632
               

               
Cow position:
               
chr21:37352449-37352610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
474-649
               

               
Cow position:
               
chr21:12575970-12575794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 12
               

               
Conread position:
               
475-632
               

               
Cow position:
               
chr21:44220195-44220032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
475-646
               

               
Cow position:
               
chr21:32828925-32829097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
139, 20
               

               
Conread position:
               
475-648
               

               
Cow position:
               
chr21:4279608-4279429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
475-661
               

               
Cow position:
               
chr21:21033589-21033397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
479-618
               

               
Cow position:
               
chr21:32928697-32928835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
18, 93
               

               
Conread position:
               
479-637
               

               
Cow position:
               
chr21:19062643-19062482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 112
               

               
Conread position:
               
479-648
               

               
Cow position:
               
chr21:48484484-48484644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
480-641
               

               
Cow position:
               
chr21:21077292-21077133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
143, 75
               

               
Conread position:
               
480-646
               

               
Cow position:
               
chr21:28029367-28029196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
480-647
               

               
Cow position:
               
chr21:23683514-23683348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 61
               

               
Conread position:
               
480-652
               

               
Cow position:
               
chr21:46132012-46132185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
88, 92
               

               
Conread position:
               
481-621
               

               
Cow position:
               
chr21:35897447-35897307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 92
               

               
Conread position:
               
481-645
               

               
Cow position:
               
chr21:12617102-12616939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
141, 60
               

               
Conread position:
               
481-646
               

               
Cow position:
               
chr21:36642872-36642706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr21:4795191-4795019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr21:17511743-17511573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr21:18289628-18289458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 5
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr21:19196197-19196371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr21:19766820-19766651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr21:20162503-20162332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
66, 106
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr21:32535940-32535773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
481-649
               

               
Cow position:
               
chr21:42463868-42464048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
481-650
               

               
Cow position:
               
chr21:42501003-42500828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
21, 153
               

               
Conread position:
               
481-660
               

               
Cow position:
               
chr21:32237260-32237081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
482-632
               

               
Cow position:
               
chr21:9438732-9438580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
482-632
               

               
Cow position:
               
chr21:31764172-31764323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 11
               

               
Conread position:
               
482-652
               

               
Cow position:
               
chr21:27743707-27743535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
482-653
               

               
Cow position:
               
chr21:28599740-28599563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
483-632
               

               
Cow position:
               
chr21:13277255-13277110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
128, 85
               

               
Conread position:
               
483-640
               

               
Cow position:
               
chr21:12973290-12973448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
484-631
               

               
Cow position:
               
chr21:8232775-8232923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
484-648
               

               
Cow position:
               
chr21:24085609-24085773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
138, 126
               

               
Conread position:
               
485-625
               

               
Cow position:
               
chr21:19868520-19868380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
486-638
               

               
Cow position:
               
chr21:14168030-14167876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
486-639
               

               
Cow position:
               
chr21:11082378-11082535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
486-643
               

               
Cow position:
               
chr21:42465793-42465631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
486-656
               

               
Cow position:
               
chr21:14464538-14464366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
486-706
               

               
Cow position:
               
chr21:13892230-13892014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 53
               

               
Conread position:
               
486-726
               

               
Cow position:
               
chr21:13256765-13256524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
117, 153
               

               
Conread position:
               
487-638
               

               
Cow position:
               
chr21:20044816-20044964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
487-648
               

               
Cow position:
               
chr21:21480220-21480382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 130
               

               
Conread position:
               
488-619
               

               
Cow position:
               
chr21:30846572-30846439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
489-674
               

               
Cow position:
               
chr21:5137533-5137719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
79, 83
               

               
Conread position:
               
490-631
               

               
Cow position:
               
chr21:31835920-31836064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
490-632
               

               
Cow position:
               
chr21:2874748-2874883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
490-646
               

               
Cow position:
               
chr21:36712154-36711997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
75, 125
               

               
Conread position:
               
490-647
               

               
Cow position:
               
chr21:28919666-28919828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 100
               

               
Conread position:
               
491-648
               

               
Cow position:
               
chr21:17262162-17262319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
131, 58
               

               
Conread position:
               
492-648
               

               
Cow position:
               
chr21:11877337-11877181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
493-648
               

               
Cow position:
               
chr21:23984326-23984487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
493-660
               

               
Cow position:
               
chr21:31278731-31278563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
129, 37
               

               
Conread position:
               
494-648
               

               
Cow position:
               
chr21:4998534-4998688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
494-648
               

               
Cow position:
               
chr21:35899762-35899605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
494-660
               

               
Cow position:
               
chr21:20548959-20549121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
128, 115
               

               
Conread position:
               
495-611
               

               
Cow position:
               
chr21:18064973-18065089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr21:10959862-10960004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
495-638
               

               
Cow position:
               
chr21:9334311-9334452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
495-638
               

               
Cow position:
               
chr21:18713234-18713091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 118
               

               
Conread position:
               
495-646
               

               
Cow position:
               
chr21:14762552-14762708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
495-647
               

               
Cow position:
               
chr21:13395502-13395354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chr21:14384185-14384033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
127, 31
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chr21:17282654-17282500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 78
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chr21:21169991-21170145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chr21:34658982-34658831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chr21:40899291-40899133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
495-650
               

               
Cow position:
               
chr21:30355125-30354970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
495-653
               

               
Cow position:
               
chr21:16910012-16909851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 114
               

               
Conread position:
               
495-661
               

               
Cow position:
               
chr21:13440188-13440023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 46
               

               
Conread position:
               
495-685
               

               
Cow position:
               
chr21:32205872-32205679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 163
               

               
Conread position:
               
496-642
               

               
Cow position:
               
chr21:11706798-11706948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
496-645
               

               
Cow position:
               
chr21:26853211-26853056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
496-646
               

               
Cow position:
               
chr21:1483443-1483288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
496-647
               

               
Cow position:
               
chr21:7564370-7564524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chr21:26241775-26241621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chr21:36163013-36163166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chr21:46777025-46777176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
496-661
               

               
Cow position:
               
chr21:24094802-24094960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
126, 59
               

               
Conread position:
               
496-666
               

               
Cow position:
               
chr21:5418811-5418637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 100
               

               
Conread position:
               
497-631
               

               
Cow position:
               
chr21:31643994-31643860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
497-637
               

               
Cow position:
               
chr21:4775132-4774991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
497-648
               

               
Cow position:
               
chr21:6764751-6764905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 76
               

               
Conread position:
               
497-648
               

               
Cow position:
               
chr21:13303766-13303616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
125, 51
               

               
Conread position:
               
498-646
               

               
Cow position:
               
chr21:42905431-42905579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
498-649
               

               
Cow position:
               
chr21:34254334-34254486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
498-656
               

               
Cow position:
               
chr21:4265086-4265242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 113
               

               
Conread position:
               
499-646
               

               
Cow position:
               
chr21:18568702-18568852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
499-646
               

               
Cow position:
               
chr21:37646613-37646764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
499-647
               

               
Cow position:
               
chr21:15445131-15445281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
499-648
               

               
Cow position:
               
chr21:34738546-34738395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
501-646
               

               
Cow position:
               
chr21:9278321-9278171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
505-643
               

               
Cow position:
               
chr21:9303822-9303959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
117, 63
               

               
Conread position:
               
506-648
               

               
Cow position:
               
chr21:8546268-8546408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
509-648
               

               
Cow position:
               
chr21:40265769-40265630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
101, 26
               

               
Conread position:
               
513-649
               

               
Cow position:
               
chr21:12339104-12338965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
513-653
               

               
Cow position:
               
chr21:39069234-39069374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
109, 138
               

               
Conread position:
               
514-661
               

               
Cow position:
               
chr21:46627010-46626861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
515-649
               

               
Cow position:
               
chr21:684415-684277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
523-656
               

               
Cow position:
               
chr21:34835503-34835634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
99, 68
               

               
Conread position:
               
541-660
               

               
Cow position:
               
chr21:24669317-24669197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               
Show alignments to all cow chromosomes.