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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8025P15.3
        

               
Conread position:
               
161-646
               

               
Cow position:
               
chr6:47026747-47026258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
184-649
               

               
Cow position:
               
chr6:56843384-56842932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
144, 32
               

               
Conread position:
               
190-379
               

               
Cow position:
               
chr6:47624644-47624830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
184, 51
               

               
Conread position:
               
191-618
               

               
Cow position:
               
chr6:6367432-6367857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 64
               

               
Conread position:
               
191-639
               

               
Cow position:
               
chr6:31425319-31425781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
192-414
               

               
Cow position:
               
chr6:12421048-12421277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
19, 206
               

               
Conread position:
               
192-646
               

               
Cow position:
               
chr6:52002595-52002144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
192-648
               

               
Cow position:
               
chr6:38853417-38853885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
7, 63
               

               
Conread position:
               
192-677
               

               
Cow position:
               
chr6:34549636-34549158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
193-632
               

               
Cow position:
               
chr6:57404878-57405335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
83, 237
               

               
Conread position:
               
193-653
               

               
Cow position:
               
chr6:54490489-54490972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
194-577
               

               
Cow position:
               
chr6:24582996-24583389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
195-648
               

               
Cow position:
               
chr6:24031620-24031148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
23, 113
               

               
Conread position:
               
196-459
               

               
Cow position:
               
chr6:54062898-54062635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
79, 21
               

               
Conread position:
               
196-671
               

               
Cow position:
               
chr6:10254461-10253989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
81, 68
               

               
Conread position:
               
196-671
               

               
Cow position:
               
chr6:56376118-56376601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 5
               

               
Conread position:
               
196-714
               

               
Cow position:
               
chr6:48806778-48807289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
199-545
               

               
Cow position:
               
chr6:51840519-51840147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
69, 210
               

               
Conread position:
               
199-634
               

               
Cow position:
               
chr6:53138686-53139142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 132
               

               
Conread position:
               
199-651
               

               
Cow position:
               
chr6:18048791-18049255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
200-606
               

               
Cow position:
               
chr6:25008945-25008530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
201-417
               

               
Cow position:
               
chr6:18469001-18469215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
45, 112
               

               
Conread position:
               
201-522
               

               
Cow position:
               
chr6:56860770-56860449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
148, 48
               

               
Conread position:
               
201-654
               

               
Cow position:
               
chr6:28477399-28476949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 133
               

               
Conread position:
               
201-658
               

               
Cow position:
               
chr6:28278903-28278453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
239, 40
               

               
Conread position:
               
202-389
               

               
Cow position:
               
chr6:53264571-53264755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
202-460
               

               
Cow position:
               
chr6:41655806-41656072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 215
               

               
Conread position:
               
202-560
               

               
Cow position:
               
chr6:18582592-18582947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
202-610
               

               
Cow position:
               
chr6:50577765-50577332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
202-645
               

               
Cow position:
               
chr6:57118714-57119152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
202-656
               

               
Cow position:
               
chr6:17736864-17736392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
202-656
               

               
Cow position:
               
chr6:37149431-37148964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
32, 211
               

               
Conread position:
               
202-676
               

               
Cow position:
               
chr6:9026744-9026260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 47
               

               
Conread position:
               
202-676
               

               
Cow position:
               
chr6:17090829-17090346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
203-459
               

               
Cow position:
               
chr6:36454365-36454618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 202
               

               
Conread position:
               
203-524
               

               
Cow position:
               
chr6:20196078-20196395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
203-621
               

               
Cow position:
               
chr6:53024563-53024997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 104
               

               
Conread position:
               
203-650
               

               
Cow position:
               
chr6:2323995-2324423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 62
               

               
Conread position:
               
203-666
               

               
Cow position:
               
chr6:59508587-59508109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
204-357
               

               
Cow position:
               
chr6:60423114-60423266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
204-365
               

               
Cow position:
               
chr6:17708053-17708208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 59
               

               
Conread position:
               
204-379
               

               
Cow position:
               
chr6:7707362-7707182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
204-459
               

               
Cow position:
               
chr6:30701670-30701418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
71, 96
               

               
Conread position:
               
204-491
               

               
Cow position:
               
chr6:15996992-15997274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 46
               

               
Conread position:
               
204-601
               

               
Cow position:
               
chr6:45596300-45596712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
204-618
               

               
Cow position:
               
chr6:3545912-3545508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
204-632
               

               
Cow position:
               
chr6:24650071-24649637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 63
               

               
Conread position:
               
204-633
               

               
Cow position:
               
chr6:24222930-24223374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 215
               

               
Conread position:
               
204-638
               

               
Cow position:
               
chr6:55475484-55475033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 220
               

               
Conread position:
               
204-640
               

               
Cow position:
               
chr6:7189883-7190338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
204-641
               

               
Cow position:
               
chr6:899074-899504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
179, 72
               

               
Conread position:
               
204-644
               

               
Cow position:
               
chr6:12501076-12500637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
204-645
               

               
Cow position:
               
chr6:31535326-31535794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 226
               

               
Conread position:
               
204-646
               

               
Cow position:
               
chr6:12338237-12337760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
73, 230
               

               
Conread position:
               
204-646
               

               
Cow position:
               
chr6:17534290-17534738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
154, 117
               

               
Conread position:
               
204-646
               

               
Cow position:
               
chr6:25784539-25784088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
204-648
               

               
Cow position:
               
chr6:6943458-6943907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 40
               

               
Conread position:
               
204-648
               

               
Cow position:
               
chr6:11192233-11192679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
87, 72
               

               
Conread position:
               
204-648
               

               
Cow position:
               
chr6:32122142-32121684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 236
               

               
Conread position:
               
204-648
               

               
Cow position:
               
chr6:37635016-37634563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
204-654
               

               
Cow position:
               
chr6:53460324-53460804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
45, 250
               

               
Conread position:
               
204-656
               

               
Cow position:
               
chr6:6994730-6995179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
204-657
               

               
Cow position:
               
chr6:28079689-28080138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
205-352
               

               
Cow position:
               
chr6:50287549-50287698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
205-501
               

               
Cow position:
               
chr6:3078723-3078435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
205-618
               

               
Cow position:
               
chr6:33917611-33918047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
77, 97
               

               
Conread position:
               
205-628
               

               
Cow position:
               
chr6:14658827-14658400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
205-637
               

               
Cow position:
               
chr6:28083785-28084232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 163
               

               
Conread position:
               
205-639
               

               
Cow position:
               
chr6:4864328-4864752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
205-639
               

               
Cow position:
               
chr6:16626172-16625730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
205-642
               

               
Cow position:
               
chr6:9008380-9008832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 101
               

               
Conread position:
               
205-646
               

               
Cow position:
               
chr6:33851573-33852008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 108
               

               
Conread position:
               
205-648
               

               
Cow position:
               
chr6:40032426-40031967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
12, 234
               

               
Conread position:
               
205-648
               

               
Cow position:
               
chr6:64432179-64431712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 233
               

               
Conread position:
               
205-649
               

               
Cow position:
               
chr6:18988438-18987989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 208
               

               
Conread position:
               
205-652
               

               
Cow position:
               
chr6:6596793-6596351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 40
               

               
Conread position:
               
205-656
               

               
Cow position:
               
chr6:15300594-15301052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 212
               

               
Conread position:
               
205-656
               

               
Cow position:
               
chr6:31564106-31564568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
205-661
               

               
Cow position:
               
chr6:42618101-42617648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
205-667
               

               
Cow position:
               
chr6:38218887-38218426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
206-375
               

               
Cow position:
               
chr6:25224466-25224291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
206-396
               

               
Cow position:
               
chr6:11790202-11790005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
206-416
               

               
Cow position:
               
chr6:59496439-59496230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
206-422
               

               
Cow position:
               
chr6:47884800-47885020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
75, 66
               

               
Conread position:
               
206-423
               

               
Cow position:
               
chr6:16219832-16220054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
17, 144
               

               
Conread position:
               
206-425
               

               
Cow position:
               
chr6:46676205-46676425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
206-573
               

               
Cow position:
               
chr6:50034508-50034866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
206-621
               

               
Cow position:
               
chr6:24545840-24545418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 234
               

               
Conread position:
               
206-632
               

               
Cow position:
               
chr6:827481-827917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 185
               

               
Conread position:
               
206-640
               

               
Cow position:
               
chr6:42693585-42693146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
206-641
               

               
Cow position:
               
chr6:611788-611341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
67, 207
               

               
Conread position:
               
206-652
               

               
Cow position:
               
chr6:60930674-60931131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 28
               

               
Conread position:
               
207-462
               

               
Cow position:
               
chr6:13718990-13718732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 217
               

               
Conread position:
               
207-516
               

               
Cow position:
               
chr6:35774757-35775078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 235
               

               
Conread position:
               
207-553
               

               
Cow position:
               
chr6:47616396-47616740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 89
               

               
Conread position:
               
207-563
               

               
Cow position:
               
chr6:30160543-30160178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
207-585
               

               
Cow position:
               
chr6:26450543-26450154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
207-589
               

               
Cow position:
               
chr6:37612331-37611955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 186
               

               
Conread position:
               
207-630
               

               
Cow position:
               
chr6:57680179-57680644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
64, 176
               

               
Conread position:
               
207-638
               

               
Cow position:
               
chr6:8966332-8965873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
69, 248
               

               
Conread position:
               
207-646
               

               
Cow position:
               
chr6:36470334-36470788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
207-649
               

               
Cow position:
               
chr6:26728300-26728754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 34
               

               
Conread position:
               
207-656
               

               
Cow position:
               
chr6:45064791-45065241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 95
               

               
Conread position:
               
207-660
               

               
Cow position:
               
chr6:37054209-37053776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 145
               

               
Conread position:
               
208-361
               

               
Cow position:
               
chr6:68838855-68839007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
208-403
               

               
Cow position:
               
chr6:41042141-41041952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
208-438
               

               
Cow position:
               
chr6:28795558-28795324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
208-518
               

               
Cow position:
               
chr6:20754077-20754382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
208-577
               

               
Cow position:
               
chr6:36194817-36194432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 34
               

               
Conread position:
               
208-607
               

               
Cow position:
               
chr6:24004763-24004363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
67, 93
               

               
Conread position:
               
208-618
               

               
Cow position:
               
chr6:12652423-12652010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 34
               

               
Conread position:
               
208-638
               

               
Cow position:
               
chr6:28810781-28811211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
208-640
               

               
Cow position:
               
chr6:4383716-4383274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 15
               

               
Conread position:
               
208-640
               

               
Cow position:
               
chr6:38018481-38018055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 77
               

               
Conread position:
               
208-642
               

               
Cow position:
               
chr6:8317945-8318387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
208-642
               

               
Cow position:
               
chr6:19427670-19427228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
208-646
               

               
Cow position:
               
chr6:2583104-2582650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 248
               

               
Conread position:
               
208-647
               

               
Cow position:
               
chr6:29210720-29210276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
98, 211
               

               
Conread position:
               
208-655
               

               
Cow position:
               
chr6:48572659-48573116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
208-712
               

               
Cow position:
               
chr6:20255182-20255677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 199
               

               
Conread position:
               
209-396
               

               
Cow position:
               
chr6:47192302-47192493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
71, 84
               

               
Conread position:
               
209-511
               

               
Cow position:
               
chr6:40428-40733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
146, 185
               

               
Conread position:
               
209-515
               

               
Cow position:
               
chr6:54478927-54479231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
72, 197
               

               
Conread position:
               
209-555
               

               
Cow position:
               
chr6:32412418-32412745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
68, 51
               

               
Conread position:
               
209-639
               

               
Cow position:
               
chr6:52556275-52556692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 96
               

               
Conread position:
               
209-646
               

               
Cow position:
               
chr6:6343655-6343201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
209-646
               

               
Cow position:
               
chr6:42565912-42565461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
210-364
               

               
Cow position:
               
chr6:31225930-31225774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
210-386
               

               
Cow position:
               
chr6:28165047-28164866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
210-389
               

               
Cow position:
               
chr6:15943778-15943963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 43
               

               
Conread position:
               
210-457
               

               
Cow position:
               
chr6:34235191-34235439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
38, 93
               

               
Conread position:
               
210-532
               

               
Cow position:
               
chr6:59602974-59603317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 226
               

               
Conread position:
               
210-628
               

               
Cow position:
               
chr6:14958123-14958556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
210-633
               

               
Cow position:
               
chr6:15782292-15782737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 234
               

               
Conread position:
               
211-457
               

               
Cow position:
               
chr6:51294504-51294258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 10
               

               
Conread position:
               
211-460
               

               
Cow position:
               
chr6:43760575-43760340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
211-521
               

               
Cow position:
               
chr6:4163949-4164268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 103
               

               
Conread position:
               
211-567
               

               
Cow position:
               
chr6:53674082-53673718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
211-585
               

               
Cow position:
               
chr6:24622757-24623140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 31
               

               
Conread position:
               
211-599
               

               
Cow position:
               
chr6:47575131-47574728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
62, 94
               

               
Conread position:
               
211-637
               

               
Cow position:
               
chr6:36652639-36652206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
211-646
               

               
Cow position:
               
chr6:63196941-63197396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 215
               

               
Conread position:
               
211-646
               

               
Cow position:
               
chr6:65872106-65871675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
211-647
               

               
Cow position:
               
chr6:16700495-16700033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
6, 212
               

               
Conread position:
               
212-490
               

               
Cow position:
               
chr6:47858510-47858230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
212-522
               

               
Cow position:
               
chr6:38914661-38914351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
72, 192
               

               
Conread position:
               
212-645
               

               
Cow position:
               
chr6:7824967-7824539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 85
               

               
Conread position:
               
213-640
               

               
Cow position:
               
chr6:61514975-61515416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
214-500
               

               
Cow position:
               
chr6:24558096-24557815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
215-448
               

               
Cow position:
               
chr6:2899348-2899589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
62, 227
               

               
Conread position:
               
215-545
               

               
Cow position:
               
chr6:38453564-38453905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
45, 32
               

               
Conread position:
               
215-610
               

               
Cow position:
               
chr6:47799515-47799110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
217-426
               

               
Cow position:
               
chr6:510089-510301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
142, 91
               

               
Conread position:
               
217-621
               

               
Cow position:
               
chr6:21231746-21231337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
59, 200
               

               
Conread position:
               
217-640
               

               
Cow position:
               
chr6:34195928-34196367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
74, 205
               

               
Conread position:
               
217-673
               

               
Cow position:
               
chr6:49398395-49398869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
59, 199
               

               
Conread position:
               
218-640
               

               
Cow position:
               
chr6:65873243-65872839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
145, 76
               

               
Conread position:
               
219-622
               

               
Cow position:
               
chr6:30974260-30973843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
222-617
               

               
Cow position:
               
chr6:54144513-54144106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 186
               

               
Conread position:
               
223-355
               

               
Cow position:
               
chr6:5085502-5085636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
223-363
               

               
Cow position:
               
chr6:36892124-36892262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
64, 90
               

               
Conread position:
               
223-620
               

               
Cow position:
               
chr6:32277151-32276732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
224-363
               

               
Cow position:
               
chr6:15754049-15753912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
225-421
               

               
Cow position:
               
chr6:10237541-10237344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
225-646
               

               
Cow position:
               
chr6:3952719-3952300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
226-641
               

               
Cow position:
               
chr6:1907726-1907319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 105
               

               
Conread position:
               
227-460
               

               
Cow position:
               
chr6:32798670-32798901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
228-422
               

               
Cow position:
               
chr6:1890373-1890570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
58, 167
               

               
Conread position:
               
229-388
               

               
Cow position:
               
chr6:7498266-7498421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
229-652
               

               
Cow position:
               
chr6:21869446-21869876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 14
               

               
Conread position:
               
231-661
               

               
Cow position:
               
chr6:67951151-67950719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
232-648
               

               
Cow position:
               
chr6:54365135-54365550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
234-505
               

               
Cow position:
               
chr6:16733613-16733336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
238-383
               

               
Cow position:
               
chr6:29649300-29649150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
238-661
               

               
Cow position:
               
chr6:16103006-16103442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
242-596
               

               
Cow position:
               
chr6:35993777-35993403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
243-539
               

               
Cow position:
               
chr6:58332076-58331771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 34
               

               
Conread position:
               
246-526
               

               
Cow position:
               
chr6:59588222-59588514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
74, 70
               

               
Conread position:
               
248-660
               

               
Cow position:
               
chr6:7173569-7174003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 62
               

               
Conread position:
               
249-649
               

               
Cow position:
               
chr6:44371757-44372171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
250-618
               

               
Cow position:
               
chr6:16423883-16423503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
250-620
               

               
Cow position:
               
chr6:12091810-12092182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
250-640
               

               
Cow position:
               
chr6:29412606-29412980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
256-429
               

               
Cow position:
               
chr6:64427401-64427221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
259-619
               

               
Cow position:
               
chr6:9750885-9751237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
259-648
               

               
Cow position:
               
chr6:2547426-2547016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
259-650
               

               
Cow position:
               
chr6:28148425-28148022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
5, 20
               

               
Conread position:
               
262-645
               

               
Cow position:
               
chr6:35990066-35990446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
263-606
               

               
Cow position:
               
chr6:1703963-1703630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
220, 22
               

               
Conread position:
               
263-627
               

               
Cow position:
               
chr6:38641660-38641292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
45, 6
               

               
Conread position:
               
263-632
               

               
Cow position:
               
chr6:5609278-5609651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
263-645
               

               
Cow position:
               
chr6:16191840-16191444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
269-641
               

               
Cow position:
               
chr6:41265274-41264906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
271-641
               

               
Cow position:
               
chr6:6731420-6731044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 88
               

               
Conread position:
               
272-674
               

               
Cow position:
               
chr6:15937696-15938101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
273-560
               

               
Cow position:
               
chr6:60740173-60739877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 28
               

               
Conread position:
               
273-617
               

               
Cow position:
               
chr6:42567013-42566673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
273-636
               

               
Cow position:
               
chr6:17997161-17997530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
55, 167
               

               
Conread position:
               
273-648
               

               
Cow position:
               
chr6:16707171-16706780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
55, 161
               

               
Conread position:
               
273-661
               

               
Cow position:
               
chr6:2365953-2366355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 159
               

               
Conread position:
               
274-640
               

               
Cow position:
               
chr6:39358185-39358559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
274-652
               

               
Cow position:
               
chr6:44511394-44511008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 96
               

               
Conread position:
               
275-647
               

               
Cow position:
               
chr6:26915485-26915104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 26
               

               
Conread position:
               
275-648
               

               
Cow position:
               
chr6:44194394-44194772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
275-648
               

               
Cow position:
               
chr6:52478254-52478654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 26
               

               
Conread position:
               
275-659
               

               
Cow position:
               
chr6:44078670-44078288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
276-493
               

               
Cow position:
               
chr6:7836070-7835852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
205, 156
               

               
Conread position:
               
276-621
               

               
Cow position:
               
chr6:66131460-66131109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
52, 17
               

               
Conread position:
               
276-632
               

               
Cow position:
               
chr6:23532810-23532452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
276-645
               

               
Cow position:
               
chr6:5302265-5302628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
30, 8
               

               
Conread position:
               
276-648
               

               
Cow position:
               
chr6:51387905-51387538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 142
               

               
Conread position:
               
277-408
               

               
Cow position:
               
chr6:65852819-65852688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
277-417
               

               
Cow position:
               
chr6:52604628-52604769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
277-591
               

               
Cow position:
               
chr6:37739329-37739017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 29
               

               
Conread position:
               
277-609
               

               
Cow position:
               
chr6:16634072-16634407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 78
               

               
Conread position:
               
277-632
               

               
Cow position:
               
chr6:21736738-21737093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
277-650
               

               
Cow position:
               
chr6:15045906-15046322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
7, 76
               

               
Conread position:
               
278-598
               

               
Cow position:
               
chr6:19013217-19012893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
279-396
               

               
Cow position:
               
chr6:38894960-38895079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
279-459
               

               
Cow position:
               
chr6:33929394-33929579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-511
               

               
Cow position:
               
chr6:15025740-15025978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
279-567
               

               
Cow position:
               
chr6:46282853-46283143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
49, 8
               

               
Conread position:
               
279-568
               

               
Cow position:
               
chr6:582120-582413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
279-584
               

               
Cow position:
               
chr6:50317892-50318218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
170, 111
               

               
Conread position:
               
279-594
               

               
Cow position:
               
chr6:47355974-47355652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
279-597
               

               
Cow position:
               
chr6:8125479-8125157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
279-621
               

               
Cow position:
               
chr6:10399762-10400094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
200, 32
               

               
Conread position:
               
279-621
               

               
Cow position:
               
chr6:59069467-59069827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-625
               

               
Cow position:
               
chr6:67187837-67187487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
279-632
               

               
Cow position:
               
chr6:47339203-47339560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
279-632
               

               
Cow position:
               
chr6:67214902-67214531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 27
               

               
Conread position:
               
279-633
               

               
Cow position:
               
chr6:50270959-50271306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 90
               

               
Conread position:
               
279-636
               

               
Cow position:
               
chr6:54864507-54864880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
279-638
               

               
Cow position:
               
chr6:13040592-13040235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
279-640
               

               
Cow position:
               
chr6:13367438-13367076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
279-640
               

               
Cow position:
               
chr6:16675962-16675603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
59, 54
               

               
Conread position:
               
279-640
               

               
Cow position:
               
chr6:24468243-24468611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
279-640
               

               
Cow position:
               
chr6:55282140-55282508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-643
               

               
Cow position:
               
chr6:45690457-45690815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-645
               

               
Cow position:
               
chr6:19681372-19681744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
49, 135
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chr6:55842011-55842385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 131
               

               
Conread position:
               
279-647
               

               
Cow position:
               
chr6:12551423-12551042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
279-647
               

               
Cow position:
               
chr6:32126208-32125841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:6264806-6264417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
49, 212
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:8209453-8209816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:10176149-10176528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:11169855-11169481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:15242989-15242609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:15305721-15305359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:17414292-17414680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:35181104-35181480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:35842810-35842434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:42961210-42961594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chr6:47520206-47519824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
279-649
               

               
Cow position:
               
chr6:18447365-18447736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
279-649
               

               
Cow position:
               
chr6:24781408-24781791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
279-649
               

               
Cow position:
               
chr6:32867066-32867434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
179, 91
               

               
Conread position:
               
279-651
               

               
Cow position:
               
chr6:5095389-5095780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
279-651
               

               
Cow position:
               
chr6:46860015-46860396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
279-656
               

               
Cow position:
               
chr6:20379326-20379700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 76
               

               
Conread position:
               
279-656
               

               
Cow position:
               
chr6:28976887-28977266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-659
               

               
Cow position:
               
chr6:38441325-38440944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
279-660
               

               
Cow position:
               
chr6:10105826-10106233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
49, 130
               

               
Conread position:
               
279-661
               

               
Cow position:
               
chr6:4079246-4079623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 24
               

               
Conread position:
               
279-661
               

               
Cow position:
               
chr6:14949328-14949721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-661
               

               
Cow position:
               
chr6:64436179-64436570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 76
               

               
Conread position:
               
279-666
               

               
Cow position:
               
chr6:51675060-51674673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
279-666
               

               
Cow position:
               
chr6:61631456-61631864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
279-677
               

               
Cow position:
               
chr6:35703056-35703443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 24
               

               
Conread position:
               
279-686
               

               
Cow position:
               
chr6:65903472-65903878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 23
               

               
Conread position:
               
280-606
               

               
Cow position:
               
chr6:19446402-19446078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
27, 21
               

               
Conread position:
               
280-615
               

               
Cow position:
               
chr6:53519472-53519816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
280-641
               

               
Cow position:
               
chr6:35436146-35435783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
280-648
               

               
Cow position:
               
chr6:21004828-21004429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
280-648
               

               
Cow position:
               
chr6:21535191-21534832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
55, 152
               

               
Conread position:
               
280-648
               

               
Cow position:
               
chr6:35103176-35103554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
280-657
               

               
Cow position:
               
chr6:68049569-68049200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
280-693
               

               
Cow position:
               
chr6:40774180-40774619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 291
               

               
Conread position:
               
280-696
               

               
Cow position:
               
chr6:49002589-49002996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
281-567
               

               
Cow position:
               
chr6:57571630-57571328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
282-525
               

               
Cow position:
               
chr6:61217881-61218133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
282-632
               

               
Cow position:
               
chr6:40736855-40737177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 68
               

               
Conread position:
               
284-618
               

               
Cow position:
               
chr6:32268740-32269066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
284-632
               

               
Cow position:
               
chr6:57164573-57164219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
284-648
               

               
Cow position:
               
chr6:6060424-6060784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
287-461
               

               
Cow position:
               
chr6:19466059-19465888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
109, 134
               

               
Conread position:
               
288-519
               

               
Cow position:
               
chr6:51486559-51486321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
289-618
               

               
Cow position:
               
chr6:39157832-39158155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
21, 133
               

               
Conread position:
               
289-632
               

               
Cow position:
               
chr6:56850162-56849807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
292-433
               

               
Cow position:
               
chr6:50760939-50760797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
293-659
               

               
Cow position:
               
chr6:60144058-60144415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 104
               

               
Conread position:
               
294-538
               

               
Cow position:
               
chr6:58597368-58597620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
294-601
               

               
Cow position:
               
chr6:5113915-5114225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
294-617
               

               
Cow position:
               
chr6:63720338-63720004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
294-630
               

               
Cow position:
               
chr6:21111089-21110760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
294-632
               

               
Cow position:
               
chr6:38771418-38771085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
294-638
               

               
Cow position:
               
chr6:6401089-6400734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
294-638
               

               
Cow position:
               
chr6:38207352-38207712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 116
               

               
Conread position:
               
294-648
               

               
Cow position:
               
chr6:20097821-20098191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
294-648
               

               
Cow position:
               
chr6:51835536-51835173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
294-649
               

               
Cow position:
               
chr6:49421654-49422004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
34, 98
               

               
Conread position:
               
294-650
               

               
Cow position:
               
chr6:51581118-51581488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
294-656
               

               
Cow position:
               
chr6:36202956-36202593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
294-661
               

               
Cow position:
               
chr6:8787899-8788276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
295-591
               

               
Cow position:
               
chr6:50822367-50822065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 119
               

               
Conread position:
               
295-618
               

               
Cow position:
               
chr6:11159866-11160205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
295-631
               

               
Cow position:
               
chr6:44377407-44377056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
295-632
               

               
Cow position:
               
chr6:13592846-13592499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
23, 115
               

               
Conread position:
               
295-632
               

               
Cow position:
               
chr6:38899635-38899967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
295-640
               

               
Cow position:
               
chr6:6201560-6201226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
33, 8
               

               
Conread position:
               
295-643
               

               
Cow position:
               
chr6:27710785-27710433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 86
               

               
Conread position:
               
295-646
               

               
Cow position:
               
chr6:209264-208900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 113
               

               
Conread position:
               
295-646
               

               
Cow position:
               
chr6:57686287-57685934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
295-647
               

               
Cow position:
               
chr6:8562855-8562490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
295-648
               

               
Cow position:
               
chr6:13687677-13688038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 39
               

               
Conread position:
               
295-658
               

               
Cow position:
               
chr6:11382833-11383206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
295-659
               

               
Cow position:
               
chr6:30314913-30315295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
59, 134
               

               
Conread position:
               
295-661
               

               
Cow position:
               
chr6:3374434-3374809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
23, 52
               

               
Conread position:
               
295-661
               

               
Cow position:
               
chr6:66434087-66433708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
295-666
               

               
Cow position:
               
chr6:51071845-51071464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
31, 205
               

               
Conread position:
               
295-766
               

               
Cow position:
               
chr6:4666658-4667129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 113
               

               
Conread position:
               
296-497
               

               
Cow position:
               
chr6:7253005-7253195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
115, 88
               

               
Conread position:
               
296-569
               

               
Cow position:
               
chr6:31526680-31526959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 123
               

               
Conread position:
               
296-640
               

               
Cow position:
               
chr6:55935841-55936195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 145
               

               
Conread position:
               
296-642
               

               
Cow position:
               
chr6:45617297-45617661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
22, 127
               

               
Conread position:
               
296-648
               

               
Cow position:
               
chr6:24917585-24917936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
296-656
               

               
Cow position:
               
chr6:51191970-51191580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
297-651
               

               
Cow position:
               
chr6:457312-456955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
15, 123
               

               
Conread position:
               
297-711
               

               
Cow position:
               
chr6:47326938-47327366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 107
               

               
Conread position:
               
298-648
               

               
Cow position:
               
chr6:49627474-49627129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
298-661
               

               
Cow position:
               
chr6:30474462-30474091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
298-682
               

               
Cow position:
               
chr6:60057520-60057913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
7, 153
               

               
Conread position:
               
299-615
               

               
Cow position:
               
chr6:28318530-28318216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
299-629
               

               
Cow position:
               
chr6:7989281-7989621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
7, 127
               

               
Conread position:
               
299-640
               

               
Cow position:
               
chr6:58074181-58073826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
299-642
               

               
Cow position:
               
chr6:8637415-8637054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 114
               

               
Conread position:
               
299-646
               

               
Cow position:
               
chr6:65871170-65870799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
299-658
               

               
Cow position:
               
chr6:66874483-66874125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 9
               

               
Conread position:
               
300-633
               

               
Cow position:
               
chr6:27870910-27870561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
300-638
               

               
Cow position:
               
chr6:33985104-33984748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
161, 39
               

               
Conread position:
               
301-646
               

               
Cow position:
               
chr6:53401487-53401144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 131
               

               
Conread position:
               
301-656
               

               
Cow position:
               
chr6:1888952-1889316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
49, 319
               

               
Conread position:
               
303-617
               

               
Cow position:
               
chr6:62327269-62326950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
303-645
               

               
Cow position:
               
chr6:54368775-54369123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
304-641
               

               
Cow position:
               
chr6:63272484-63272833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
304-644
               

               
Cow position:
               
chr6:23247838-23248186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 108
               

               
Conread position:
               
305-618
               

               
Cow position:
               
chr6:47305467-47305143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
51, 116
               

               
Conread position:
               
305-646
               

               
Cow position:
               
chr6:31526173-31525824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
305-646
               

               
Cow position:
               
chr6:36196337-36195989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
305-648
               

               
Cow position:
               
chr6:54132940-54132591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
305-650
               

               
Cow position:
               
chr6:7130753-7131100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 233
               

               
Conread position:
               
305-656
               

               
Cow position:
               
chr6:20172351-20171986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
41, 18
               

               
Conread position:
               
305-658
               

               
Cow position:
               
chr6:35613290-35613648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 109
               

               
Conread position:
               
305-686
               

               
Cow position:
               
chr6:60350165-60350565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
23, 104
               

               
Conread position:
               
306-581
               

               
Cow position:
               
chr6:47204601-47204314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
306-642
               

               
Cow position:
               
chr6:38614938-38614603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
306-660
               

               
Cow position:
               
chr6:54140926-54140575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
307-584
               

               
Cow position:
               
chr6:12542805-12543095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
307-646
               

               
Cow position:
               
chr6:10695985-10695644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
307-658
               

               
Cow position:
               
chr6:12519623-12519280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 92
               

               
Conread position:
               
311-597
               

               
Cow position:
               
chr6:65946960-65947263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 46
               

               
Conread position:
               
311-640
               

               
Cow position:
               
chr6:35415395-35415740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 128
               

               
Conread position:
               
312-646
               

               
Cow position:
               
chr6:11789508-11789177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 87
               

               
Conread position:
               
314-640
               

               
Cow position:
               
chr6:12387220-12387541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
314-649
               

               
Cow position:
               
chr6:60474248-60473906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 134
               

               
Conread position:
               
316-646
               

               
Cow position:
               
chr6:3017565-3017224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
30, 86
               

               
Conread position:
               
316-647
               

               
Cow position:
               
chr6:46627409-46627083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
316-648
               

               
Cow position:
               
chr6:29077850-29077502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 85
               

               
Conread position:
               
317-648
               

               
Cow position:
               
chr6:50747112-50746754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
323-666
               

               
Cow position:
               
chr6:39917277-39916940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
324-589
               

               
Cow position:
               
chr6:48442678-48442411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
325-646
               

               
Cow position:
               
chr6:10423274-10422949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
327-638
               

               
Cow position:
               
chr6:29240043-29239726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
327-640
               

               
Cow position:
               
chr6:54430934-54430600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
327-644
               

               
Cow position:
               
chr6:16746447-16746117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
327-648
               

               
Cow position:
               
chr6:130059-130391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
327-656
               

               
Cow position:
               
chr6:9452666-9453004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
328-648
               

               
Cow position:
               
chr6:20330111-20329794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
329-648
               

               
Cow position:
               
chr6:48282094-48281768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
331-664
               

               
Cow position:
               
chr6:60781360-60781690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
62, 120
               

               
Conread position:
               
333-607
               

               
Cow position:
               
chr6:32676984-32677265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
338-639
               

               
Cow position:
               
chr6:8804438-8804745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
339-643
               

               
Cow position:
               
chr6:21456591-21456911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
341-646
               

               
Cow position:
               
chr6:24631020-24631316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
140, 14
               

               
Conread position:
               
349-640
               

               
Cow position:
               
chr6:58316127-58315830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 56
               

               
Conread position:
               
355-640
               

               
Cow position:
               
chr6:24652122-24652402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 54
               

               
Conread position:
               
355-640
               

               
Cow position:
               
chr6:50800343-50800625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
355-656
               

               
Cow position:
               
chr6:22969155-22968837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 63
               

               
Conread position:
               
356-648
               

               
Cow position:
               
chr6:39092567-39092288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
75, 116
               

               
Conread position:
               
357-630
               

               
Cow position:
               
chr6:24962213-24961936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
137, 71
               

               
Conread position:
               
359-567
               

               
Cow position:
               
chr6:42362648-42362443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
50, 63
               

               
Conread position:
               
359-618
               

               
Cow position:
               
chr6:58749868-58750126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
359-626
               

               
Cow position:
               
chr6:65096349-65096619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
119, 24
               

               
Conread position:
               
359-632
               

               
Cow position:
               
chr6:49821587-49821313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 129
               

               
Conread position:
               
359-638
               

               
Cow position:
               
chr6:59276874-59277157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
359-640
               

               
Cow position:
               
chr6:3929387-3929102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 88
               

               
Conread position:
               
359-646
               

               
Cow position:
               
chr6:40713435-40713724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
359-647
               

               
Cow position:
               
chr6:44099155-44098859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
359-653
               

               
Cow position:
               
chr6:58594035-58594340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 122
               

               
Conread position:
               
359-656
               

               
Cow position:
               
chr6:3118125-3118432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
23, 28
               

               
Conread position:
               
359-656
               

               
Cow position:
               
chr6:6701207-6701503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
100, 48
               

               
Conread position:
               
359-657
               

               
Cow position:
               
chr6:55140600-55140896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
359-661
               

               
Cow position:
               
chr6:3759628-3759342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
244, 27
               

               
Conread position:
               
359-678
               

               
Cow position:
               
chr6:16676684-16676365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
70, 129
               

               
Conread position:
               
359-704
               

               
Cow position:
               
chr6:47847639-47847989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
79, 129
               

               
Conread position:
               
360-617
               

               
Cow position:
               
chr6:37467475-37467734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
360-646
               

               
Cow position:
               
chr6:60239328-60239613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
360-648
               

               
Cow position:
               
chr6:36928728-36928425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 72
               

               
Conread position:
               
360-649
               

               
Cow position:
               
chr6:21542390-21542092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
361-632
               

               
Cow position:
               
chr6:52248066-52248344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
361-648
               

               
Cow position:
               
chr6:607329-607035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
361-659
               

               
Cow position:
               
chr6:56902930-56902626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 49
               

               
Conread position:
               
363-620
               

               
Cow position:
               
chr6:416170-415897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 120
               

               
Conread position:
               
363-648
               

               
Cow position:
               
chr6:1944779-1944504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 41
               

               
Conread position:
               
368-618
               

               
Cow position:
               
chr6:53731583-53731325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 58
               

               
Conread position:
               
369-658
               

               
Cow position:
               
chr6:9323207-9322922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
370-656
               

               
Cow position:
               
chr6:56041566-56041857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
373-639
               

               
Cow position:
               
chr6:28164855-28164577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
86, 58
               

               
Conread position:
               
374-640
               

               
Cow position:
               
chr6:23986692-23986953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
374-646
               

               
Cow position:
               
chr6:47624908-47625184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
374-647
               

               
Cow position:
               
chr6:62479107-62479391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 65
               

               
Conread position:
               
374-659
               

               
Cow position:
               
chr6:25773332-25773618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
114, 44
               

               
Conread position:
               
375-649
               

               
Cow position:
               
chr6:54807279-54806995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
78, 42
               

               
Conread position:
               
376-646
               

               
Cow position:
               
chr6:60456880-60456605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
110, 56
               

               
Conread position:
               
376-656
               

               
Cow position:
               
chr6:14289303-14289569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
235, 56
               

               
Conread position:
               
378-631
               

               
Cow position:
               
chr6:68112451-68112696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
391-647
               

               
Cow position:
               
chr6:50422043-50422296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
394-653
               

               
Cow position:
               
chr6:52401896-52401629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
67, 32
               

               
Conread position:
               
395-645
               

               
Cow position:
               
chr6:59301794-59302048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
396-640
               

               
Cow position:
               
chr6:60153069-60152817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
401-638
               

               
Cow position:
               
chr6:17669322-17669093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
405-644
               

               
Cow position:
               
chr6:5462036-5462271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
406-647
               

               
Cow position:
               
chr6:54294134-54293885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
408-568
               

               
Cow position:
               
chr6:52731128-52731293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
409-644
               

               
Cow position:
               
chr6:30285708-30285468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
409-648
               

               
Cow position:
               
chr6:16411210-16410969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
409-657
               

               
Cow position:
               
chr6:53652064-53651805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
412-644
               

               
Cow position:
               
chr6:619576-619333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 167
               

               
Conread position:
               
412-648
               

               
Cow position:
               
chr6:20230808-20231052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
413-640
               

               
Cow position:
               
chr6:60819532-60819299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
414-617
               

               
Cow position:
               
chr6:46292328-46292533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
13, 124
               

               
Conread position:
               
414-628
               

               
Cow position:
               
chr6:61137393-61137158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
414-632
               

               
Cow position:
               
chr6:24515180-24515404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
414-640
               

               
Cow position:
               
chr6:5958010-5958235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
414-646
               

               
Cow position:
               
chr6:53711133-53710893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 203
               

               
Conread position:
               
414-652
               

               
Cow position:
               
chr6:48344349-48344097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
415-632
               

               
Cow position:
               
chr6:61130459-61130693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
415-642
               

               
Cow position:
               
chr6:38895063-38895296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
416-649
               

               
Cow position:
               
chr6:16738035-16737793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
416-653
               

               
Cow position:
               
chr6:11790018-11789767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 106
               

               
Conread position:
               
417-637
               

               
Cow position:
               
chr6:6188247-6188039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
421-632
               

               
Cow position:
               
chr6:30786147-30786359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
52, 5
               

               
Conread position:
               
421-647
               

               
Cow position:
               
chr6:12928128-12927894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
421-661
               

               
Cow position:
               
chr6:17933096-17932860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
124, 18
               

               
Conread position:
               
422-639
               

               
Cow position:
               
chr6:15922990-15923215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
423-648
               

               
Cow position:
               
chr6:24327133-24327362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 16
               

               
Conread position:
               
424-645
               

               
Cow position:
               
chr6:52188830-52189046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
424-647
               

               
Cow position:
               
chr6:12623473-12623245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 185
               

               
Conread position:
               
425-648
               

               
Cow position:
               
chr6:32915917-32916147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 134
               

               
Conread position:
               
427-632
               

               
Cow position:
               
chr6:31879379-31879583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
434-644
               

               
Cow position:
               
chr6:39994463-39994684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
435-658
               

               
Cow position:
               
chr6:1562122-1561898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
107, 26
               

               
Conread position:
               
437-648
               

               
Cow position:
               
chr6:40138721-40138932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
438-633
               

               
Cow position:
               
chr6:58439955-58439755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
438-645
               

               
Cow position:
               
chr6:24902150-24902365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 142
               

               
Conread position:
               
438-648
               

               
Cow position:
               
chr6:19329761-19329984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
438-648
               

               
Cow position:
               
chr6:53178630-53178413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
441-590
               

               
Cow position:
               
chr6:59249692-59249849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
443-648
               

               
Cow position:
               
chr6:41678549-41678344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
452-632
               

               
Cow position:
               
chr6:66453774-66453590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 126
               

               
Conread position:
               
452-648
               

               
Cow position:
               
chr6:1002265-1002461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
116, 28
               

               
Conread position:
               
452-675
               

               
Cow position:
               
chr6:22863434-22863660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
453-602
               

               
Cow position:
               
chr6:67436962-67436808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
454-650
               

               
Cow position:
               
chr6:32858862-32858669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
455-565
               

               
Cow position:
               
chr6:65852575-65852686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
455-623
               

               
Cow position:
               
chr6:1327395-1327220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
455-627
               

               
Cow position:
               
chr6:6098312-6098488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
455-628
               

               
Cow position:
               
chr6:6460514-6460335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 166
               

               
Conread position:
               
455-632
               

               
Cow position:
               
chr6:55366345-55366534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
455-638
               

               
Cow position:
               
chr6:32210657-32210843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
455-640
               

               
Cow position:
               
chr6:2607586-2607394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
455-641
               

               
Cow position:
               
chr6:5500828-5501014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
455-645
               

               
Cow position:
               
chr6:2012990-2012795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
455-646
               

               
Cow position:
               
chr6:20605907-20605709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
455-646
               

               
Cow position:
               
chr6:30128348-30128550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
455-646
               

               
Cow position:
               
chr6:47540502-47540301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
18, 127
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr6:1770227-1770422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr6:1890873-1891072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr6:10605659-10605458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr6:54884939-54885140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr6:58076201-58075998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 19
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr6:65676225-65676030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chr6:65711795-65711600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
28, 47
               

               
Conread position:
               
455-656
               

               
Cow position:
               
chr6:67304774-67304567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
455-659
               

               
Cow position:
               
chr6:16220052-16220263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
455-713
               

               
Cow position:
               
chr6:65862661-65862386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
458-621
               

               
Cow position:
               
chr6:10705800-10705969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
458-645
               

               
Cow position:
               
chr6:61162676-61162489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
24, 63
               

               
Conread position:
               
459-618
               

               
Cow position:
               
chr6:10237333-10237175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
459-632
               

               
Cow position:
               
chr6:16781800-16781979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
459-686
               

               
Cow position:
               
chr6:65904304-65904529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
461-640
               

               
Cow position:
               
chr6:62485965-62486148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
462-657
               

               
Cow position:
               
chr6:7253463-7253662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
463-646
               

               
Cow position:
               
chr6:6341117-6340928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
7, 62
               

               
Conread position:
               
463-660
               

               
Cow position:
               
chr6:8543400-8543197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
39, 5
               

               
Conread position:
               
464-645
               

               
Cow position:
               
chr6:34204222-34204036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
466-660
               

               
Cow position:
               
chr6:55659758-55659956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
467-656
               

               
Cow position:
               
chr6:13717800-13717617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
468-616
               

               
Cow position:
               
chr6:64063695-64063850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
468-644
               

               
Cow position:
               
chr6:15266310-15266493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 62
               

               
Conread position:
               
468-648
               

               
Cow position:
               
chr6:22804408-22804594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
468-648
               

               
Cow position:
               
chr6:68297629-68297814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
468-649
               

               
Cow position:
               
chr6:57474334-57474152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 87
               

               
Conread position:
               
468-656
               

               
Cow position:
               
chr6:11465932-11466125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 12
               

               
Conread position:
               
468-656
               

               
Cow position:
               
chr6:39954647-39954452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
468-661
               

               
Cow position:
               
chr6:15961860-15962061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
468-713
               

               
Cow position:
               
chr6:36918219-36918467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
23, 13
               

               
Conread position:
               
469-625
               

               
Cow position:
               
chr6:12516105-12515942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
469-632
               

               
Cow position:
               
chr6:55344530-55344693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
469-648
               

               
Cow position:
               
chr6:59597614-59597430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
469-648
               

               
Cow position:
               
chr6:66751837-66751659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
469-668
               

               
Cow position:
               
chr6:31688431-31688626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
469-695
               

               
Cow position:
               
chr6:44869177-44869402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
471-617
               

               
Cow position:
               
chr6:64427145-64426995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
471-620
               

               
Cow position:
               
chr6:60485643-60485492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
471-621
               

               
Cow position:
               
chr6:23648661-23648810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
471-656
               

               
Cow position:
               
chr6:40137111-40137300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
473-661
               

               
Cow position:
               
chr6:43763780-43763590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
474-646
               

               
Cow position:
               
chr6:48468753-48468578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 84
               

               
Conread position:
               
475-654
               

               
Cow position:
               
chr6:19440783-19440600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
475-672
               

               
Cow position:
               
chr6:29084280-29084478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
476-646
               

               
Cow position:
               
chr6:67317673-67317497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
476-650
               

               
Cow position:
               
chr6:31009032-31009212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
476-658
               

               
Cow position:
               
chr6:16298637-16298456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
111, 138
               

               
Conread position:
               
477-618
               

               
Cow position:
               
chr6:30075938-30076081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
477-656
               

               
Cow position:
               
chr6:20420319-20420138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
479-632
               

               
Cow position:
               
chr6:20747595-20747440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
479-638
               

               
Cow position:
               
chr6:1174557-1174719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
479-645
               

               
Cow position:
               
chr6:45156055-45155885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
479-664
               

               
Cow position:
               
chr6:60467966-60467784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
480-646
               

               
Cow position:
               
chr6:3719060-3719233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
480-648
               

               
Cow position:
               
chr6:14063719-14063885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
481-639
               

               
Cow position:
               
chr6:242751-242596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
481-639
               

               
Cow position:
               
chr6:52121177-52121019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
481-640
               

               
Cow position:
               
chr6:55607871-55608025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
16, 42
               

               
Conread position:
               
481-641
               

               
Cow position:
               
chr6:21184899-21184736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
481-642
               

               
Cow position:
               
chr6:12934198-12934361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
79, 57
               

               
Conread position:
               
481-645
               

               
Cow position:
               
chr6:45160353-45160515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
141, 57
               

               
Conread position:
               
481-645
               

               
Cow position:
               
chr6:69500265-69500106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 81
               

               
Conread position:
               
481-646
               

               
Cow position:
               
chr6:1783836-1783997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 44
               

               
Conread position:
               
481-647
               

               
Cow position:
               
chr6:40264259-40264423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr6:27851766-27851931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr6:50445819-50445986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 124
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chr6:60018007-60017841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 82
               

               
Conread position:
               
481-650
               

               
Cow position:
               
chr6:51398743-51398572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
481-656
               

               
Cow position:
               
chr6:49685525-49685350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
140, 29
               

               
Conread position:
               
481-659
               

               
Cow position:
               
chr6:21812672-21812493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
482-642
               

               
Cow position:
               
chr6:18497833-18497675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
482-645
               

               
Cow position:
               
chr6:389110-388947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
140, 101
               

               
Conread position:
               
482-646
               

               
Cow position:
               
chr6:28482960-28482790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
482-648
               

               
Cow position:
               
chr6:5673173-5673002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
482-649
               

               
Cow position:
               
chr6:9375430-9375602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
482-656
               

               
Cow position:
               
chr6:19401797-19401627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 54
               

               
Conread position:
               
482-656
               

               
Cow position:
               
chr6:57384462-57384285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
483-621
               

               
Cow position:
               
chr6:38594565-38594703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
483-638
               

               
Cow position:
               
chr6:62345910-62346066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
483-656
               

               
Cow position:
               
chr6:9454041-9453875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
484-617
               

               
Cow position:
               
chr6:20548936-20548804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
485-628
               

               
Cow position:
               
chr6:59068978-59069122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
485-640
               

               
Cow position:
               
chr6:7951951-7952112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
485-640
               

               
Cow position:
               
chr6:10484982-10485139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
485-648
               

               
Cow position:
               
chr6:21311817-21311985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
61, 93
               

               
Conread position:
               
486-584
               

               
Cow position:
               
chr6:52705780-52705879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
486-621
               

               
Cow position:
               
chr6:1886727-1886862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
486-625
               

               
Cow position:
               
chr6:51463676-51463820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
486-628
               

               
Cow position:
               
chr6:31260927-31260780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
486-630
               

               
Cow position:
               
chr6:62925061-62925204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 40
               

               
Conread position:
               
486-631
               

               
Cow position:
               
chr6:17248671-17248526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
133, 66
               

               
Conread position:
               
486-631
               

               
Cow position:
               
chr6:35769546-35769692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
486-641
               

               
Cow position:
               
chr6:34031599-34031448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
486-642
               

               
Cow position:
               
chr6:13741631-13741475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 119
               

               
Conread position:
               
486-642
               

               
Cow position:
               
chr6:57777095-57777251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 9
               

               
Conread position:
               
486-644
               

               
Cow position:
               
chr6:54357438-54357594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
486-648
               

               
Cow position:
               
chr6:5330087-5329928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
486-648
               

               
Cow position:
               
chr6:11830108-11829939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
486-648
               

               
Cow position:
               
chr6:47150716-47150552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
486-656
               

               
Cow position:
               
chr6:6164587-6164418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
63, 124
               

               
Conread position:
               
486-656
               

               
Cow position:
               
chr6:30826096-30826269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
54, 91
               

               
Conread position:
               
486-660
               

               
Cow position:
               
chr6:18977563-18977385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
486-673
               

               
Cow position:
               
chr6:34235498-34235687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
486-673
               

               
Cow position:
               
chr6:52025716-52025907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
486-695
               

               
Cow position:
               
chr6:22986053-22986259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
57, 27
               

               
Conread position:
               
487-641
               

               
Cow position:
               
chr6:40157211-40157365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
42, 115
               

               
Conread position:
               
487-648
               

               
Cow position:
               
chr6:41823886-41824055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 93
               

               
Conread position:
               
487-656
               

               
Cow position:
               
chr6:20261268-20261097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
487-661
               

               
Cow position:
               
chr6:46250741-46250921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
488-647
               

               
Cow position:
               
chr6:64449324-64449166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 85
               

               
Conread position:
               
490-626
               

               
Cow position:
               
chr6:445247-445106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
490-632
               

               
Cow position:
               
chr6:50504890-50504745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
47, 124
               

               
Conread position:
               
490-637
               

               
Cow position:
               
chr6:12739514-12739365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
490-641
               

               
Cow position:
               
chr6:10225750-10225896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
490-649
               

               
Cow position:
               
chr6:12845242-12845089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
490-659
               

               
Cow position:
               
chr6:31978587-31978761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
492-632
               

               
Cow position:
               
chr6:62324921-62324779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
492-640
               

               
Cow position:
               
chr6:55743315-55743162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
493-632
               

               
Cow position:
               
chr6:1467828-1467972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
493-643
               

               
Cow position:
               
chr6:7539502-7539351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
493-661
               

               
Cow position:
               
chr6:48946442-48946609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
493-696
               

               
Cow position:
               
chr6:54479579-54479382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
494-653
               

               
Cow position:
               
chr6:10636099-10635945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
495-613
               

               
Cow position:
               
chr6:63251996-63252114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chr6:59015634-59015773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 28
               

               
Conread position:
               
495-640
               

               
Cow position:
               
chr6:7694424-7694572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 86
               

               
Conread position:
               
495-640
               

               
Cow position:
               
chr6:34099847-34099993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
495-642
               

               
Cow position:
               
chr6:25407465-25407617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
495-645
               

               
Cow position:
               
chr6:23888733-23888885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 121
               

               
Conread position:
               
495-646
               

               
Cow position:
               
chr6:20406813-20406656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
495-646
               

               
Cow position:
               
chr6:50119863-50120013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chr6:17067893-17068046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chr6:21587490-21587648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chr6:33147986-33147832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
495-649
               

               
Cow position:
               
chr6:14850789-14850937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
495-649
               

               
Cow position:
               
chr6:33360259-33360100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
495-651
               

               
Cow position:
               
chr6:29284622-29284463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
495-658
               

               
Cow position:
               
chr6:19145023-19145189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 147
               

               
Conread position:
               
495-666
               

               
Cow position:
               
chr6:50090572-50090395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
495-699
               

               
Cow position:
               
chr6:29479969-29479768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 171
               

               
Conread position:
               
496-630
               

               
Cow position:
               
chr6:2896679-2896542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
496-630
               

               
Cow position:
               
chr6:31928191-31928064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
496-632
               

               
Cow position:
               
chr6:2404853-2404987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
126, 114
               

               
Conread position:
               
496-632
               

               
Cow position:
               
chr6:59620595-59620458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
76, 72
               

               
Conread position:
               
496-642
               

               
Cow position:
               
chr6:55374367-55374518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chr6:1278585-1278738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chr6:61113680-61113523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chr6:66363320-66363471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
126, 17
               

               
Conread position:
               
496-649
               

               
Cow position:
               
chr6:642647-642805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
496-649
               

               
Cow position:
               
chr6:7103306-7103463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 142
               

               
Conread position:
               
496-685
               

               
Cow position:
               
chr6:26765962-26766162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
496-695
               

               
Cow position:
               
chr6:14201628-14201425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 189
               

               
Conread position:
               
496-708
               

               
Cow position:
               
chr6:17456790-17456580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
497-630
               

               
Cow position:
               
chr6:11705124-11704987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
45, 58
               

               
Conread position:
               
497-646
               

               
Cow position:
               
chr6:14931796-14931945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
497-646
               

               
Cow position:
               
chr6:38987750-38987900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
497-648
               

               
Cow position:
               
chr6:23695919-23695771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
498-648
               

               
Cow position:
               
chr6:16491994-16492147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 13
               

               
Conread position:
               
498-649
               

               
Cow position:
               
chr6:9788989-9788832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
499-631
               

               
Cow position:
               
chr6:46667029-46666894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
38, 81
               

               
Conread position:
               
499-648
               

               
Cow position:
               
chr6:16288500-16288645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
499-648
               

               
Cow position:
               
chr6:34075941-34075797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
499-648
               

               
Cow position:
               
chr6:46571040-46570893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
499-656
               

               
Cow position:
               
chr6:31048587-31048741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
501-649
               

               
Cow position:
               
chr6:37331882-37331738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
501-661
               

               
Cow position:
               
chr6:6117629-6117789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
502-632
               

               
Cow position:
               
chr6:33311394-33311261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
502-648
               

               
Cow position:
               
chr6:16397266-16397409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
503-640
               

               
Cow position:
               
chr6:7801446-7801584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
504-661
               

               
Cow position:
               
chr6:55455957-55456119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
505-648
               

               
Cow position:
               
chr6:32024420-32024565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
507-661
               

               
Cow position:
               
chr6:24557551-24557397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
509-657
               

               
Cow position:
               
chr6:10487427-10487275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
515-685
               

               
Cow position:
               
chr6:42840072-42839902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
516-640
               

               
Cow position:
               
chr6:4164489-4164616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
26, 86
               

               
Conread position:
               
519-640
               

               
Cow position:
               
chr6:56502212-56502090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 54
               

               
Conread position:
               
522-648
               

               
Cow position:
               
chr6:61443199-61443330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
531-648
               

               
Cow position:
               
chr6:3592014-3591896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
534-677
               

               
Cow position:
               
chr6:64314077-64314221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 75
               

               
Conread position:
               
536-656
               

               
Cow position:
               
chr6:65846561-65846682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
542-661
               

               
Cow position:
               
chr6:25223363-25223485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
544-661
               

               
Cow position:
               
chr6:19045263-19045146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
550-666
               

               
Cow position:
               
chr6:58037489-58037374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
551-686
               

               
Cow position:
               
chr6:43788609-43788745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               
Show alignments to all cow chromosomes.