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Cow genome map

           
Conread name:
           
Ss1.1-Pig3-SRG8025P15.3
        

               
Conread position:
               
129-707
               

               
Cow position:
               
chrX:7646548-7645957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 38
               

               
Conread position:
               
154-639
               

               
Cow position:
               
chrX:32431884-32431396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
167-545
               

               
Cow position:
               
chrX:11614946-11614563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
172-480
               

               
Cow position:
               
chrX:22481548-22481842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
185-646
               

               
Cow position:
               
chrX:14973501-14973970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
33, 125
               

               
Conread position:
               
191-365
               

               
Cow position:
               
chrX:31273431-31273256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
191-649
               

               
Cow position:
               
chrX:35224528-35224061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 199
               

               
Conread position:
               
194-396
               

               
Cow position:
               
chrX:33585714-33585521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
90, 56
               

               
Conread position:
               
194-616
               

               
Cow position:
               
chrX:4825601-4826035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
23, 150
               

               
Conread position:
               
195-640
               

               
Cow position:
               
chrX:27176086-27176552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 246
               

               
Conread position:
               
196-459
               

               
Cow position:
               
chrX:7806648-7806383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
196-631
               

               
Cow position:
               
chrX:40789427-40788981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 115
               

               
Conread position:
               
197-656
               

               
Cow position:
               
chrX:22624703-22624233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 142
               

               
Conread position:
               
198-668
               

               
Cow position:
               
chrX:12250057-12249546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
75, 407
               

               
Conread position:
               
199-627
               

               
Cow position:
               
chrX:20801976-20801560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 5
               

               
Conread position:
               
199-648
               

               
Cow position:
               
chrX:11717563-11718020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
200-363
               

               
Cow position:
               
chrX:488895-488734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 49
               

               
Conread position:
               
200-380
               

               
Cow position:
               
chrX:6677046-6676860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
200-432
               

               
Cow position:
               
chrX:29874151-29874389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
18, 101
               

               
Conread position:
               
200-640
               

               
Cow position:
               
chrX:31260385-31260862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
200-656
               

               
Cow position:
               
chrX:40692533-40692986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
201-459
               

               
Cow position:
               
chrX:34355757-34356007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
201-460
               

               
Cow position:
               
chrX:46084191-46083931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 218
               

               
Conread position:
               
201-646
               

               
Cow position:
               
chrX:25714014-25713561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 398
               

               
Conread position:
               
201-656
               

               
Cow position:
               
chrX:27287520-27287967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
201-671
               

               
Cow position:
               
chrX:15305077-15305548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 236
               

               
Conread position:
               
202-350
               

               
Cow position:
               
chrX:30069501-30069354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
202-364
               

               
Cow position:
               
chrX:47865881-47866044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
202-381
               

               
Cow position:
               
chrX:29675717-29675533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
202-487
               

               
Cow position:
               
chrX:19678062-19678332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
75, 43
               

               
Conread position:
               
202-646
               

               
Cow position:
               
chrX:917161-917607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 73
               

               
Conread position:
               
202-648
               

               
Cow position:
               
chrX:6544483-6544016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
74, 228
               

               
Conread position:
               
202-661
               

               
Cow position:
               
chrX:6563735-6563259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
202-662
               

               
Cow position:
               
chrX:42011500-42011026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 222
               

               
Conread position:
               
202-668
               

               
Cow position:
               
chrX:11938716-11939185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
203-619
               

               
Cow position:
               
chrX:29875886-29876277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
56, 77
               

               
Conread position:
               
204-336
               

               
Cow position:
               
chrX:29056504-29056371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
204-359
               

               
Cow position:
               
chrX:4545140-4545293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 45
               

               
Conread position:
               
204-429
               

               
Cow position:
               
chrX:31602873-31602645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
204-459
               

               
Cow position:
               
chrX:27771362-27771615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
76, 104
               

               
Conread position:
               
204-558
               

               
Cow position:
               
chrX:20584548-20584169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
204-577
               

               
Cow position:
               
chrX:23667331-23666954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 19
               

               
Conread position:
               
204-610
               

               
Cow position:
               
chrX:1499890-1499468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
71, 106
               

               
Conread position:
               
204-621
               

               
Cow position:
               
chrX:41732987-41733400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
204-630
               

               
Cow position:
               
chrX:10959180-10959625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 213
               

               
Conread position:
               
204-632
               

               
Cow position:
               
chrX:4750102-4750522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 48
               

               
Conread position:
               
204-639
               

               
Cow position:
               
chrX:41123281-41122841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
72, 211
               

               
Conread position:
               
204-644
               

               
Cow position:
               
chrX:36841076-36840637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 45
               

               
Conread position:
               
204-646
               

               
Cow position:
               
chrX:2786349-2786782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
204-646
               

               
Cow position:
               
chrX:18286867-18287290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 42
               

               
Conread position:
               
204-648
               

               
Cow position:
               
chrX:38964333-38963869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 207
               

               
Conread position:
               
204-648
               

               
Cow position:
               
chrX:39938302-39938757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
204-652
               

               
Cow position:
               
chrX:32310318-32309862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
204-656
               

               
Cow position:
               
chrX:7425681-7425216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 215
               

               
Conread position:
               
204-656
               

               
Cow position:
               
chrX:24131943-24132399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
204-661
               

               
Cow position:
               
chrX:17662385-17662852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 69
               

               
Conread position:
               
204-661
               

               
Cow position:
               
chrX:24259365-24259833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 108
               

               
Conread position:
               
205-383
               

               
Cow position:
               
chrX:45981124-45980946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 37
               

               
Conread position:
               
205-628
               

               
Cow position:
               
chrX:37575051-37574636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
103, 71
               

               
Conread position:
               
205-632
               

               
Cow position:
               
chrX:7497448-7497021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 37
               

               
Conread position:
               
205-647
               

               
Cow position:
               
chrX:42994831-42994375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
37, 130
               

               
Conread position:
               
205-648
               

               
Cow position:
               
chrX:31442604-31443061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 104
               

               
Conread position:
               
206-384
               

               
Cow position:
               
chrX:46028548-46028728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
206-557
               

               
Cow position:
               
chrX:39415156-39415518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
206-585
               

               
Cow position:
               
chrX:39000062-38999667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
206-646
               

               
Cow position:
               
chrX:8925914-8925465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
73, 102
               

               
Conread position:
               
206-647
               

               
Cow position:
               
chrX:15006925-15007390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
67, 219
               

               
Conread position:
               
206-648
               

               
Cow position:
               
chrX:23497463-23497903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
84, 67
               

               
Conread position:
               
206-648
               

               
Cow position:
               
chrX:33802794-33803253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 222
               

               
Conread position:
               
206-649
               

               
Cow position:
               
chrX:11856637-11856188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
206-650
               

               
Cow position:
               
chrX:35413828-35413390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
56, 43
               

               
Conread position:
               
206-656
               

               
Cow position:
               
chrX:6203755-6203307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 201
               

               
Conread position:
               
207-337
               

               
Cow position:
               
chrX:20344110-20344234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
207-371
               

               
Cow position:
               
chrX:17952763-17952928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
207-372
               

               
Cow position:
               
chrX:30483797-30483962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
207-625
               

               
Cow position:
               
chrX:29121254-29120841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
207-637
               

               
Cow position:
               
chrX:11747043-11746613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 117
               

               
Conread position:
               
207-640
               

               
Cow position:
               
chrX:36009703-36010122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 35
               

               
Conread position:
               
207-641
               

               
Cow position:
               
chrX:45429798-45430250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
207-646
               

               
Cow position:
               
chrX:11072987-11073429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
208-362
               

               
Cow position:
               
chrX:37186371-37186218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 105
               

               
Conread position:
               
208-457
               

               
Cow position:
               
chrX:43426502-43426254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
208-460
               

               
Cow position:
               
chrX:9839433-9839185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
208-484
               

               
Cow position:
               
chrX:26618907-26619172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
208-620
               

               
Cow position:
               
chrX:29541996-29542430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 202
               

               
Conread position:
               
208-621
               

               
Cow position:
               
chrX:41560065-41560451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
208-630
               

               
Cow position:
               
chrX:1503539-1503117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 94
               

               
Conread position:
               
208-632
               

               
Cow position:
               
chrX:41084128-41083701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 216
               

               
Conread position:
               
208-632
               

               
Cow position:
               
chrX:46700641-46701043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
208-646
               

               
Cow position:
               
chrX:10302549-10302098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
208-647
               

               
Cow position:
               
chrX:5637947-5638408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
92, 65
               

               
Conread position:
               
208-660
               

               
Cow position:
               
chrX:1978714-1978254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 22
               

               
Conread position:
               
208-661
               

               
Cow position:
               
chrX:17630597-17631057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
209-362
               

               
Cow position:
               
chrX:17895725-17895873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
209-395
               

               
Cow position:
               
chrX:34470921-34470739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
209-427
               

               
Cow position:
               
chrX:6367563-6367793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
209-452
               

               
Cow position:
               
chrX:21640634-21640392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 35
               

               
Conread position:
               
209-460
               

               
Cow position:
               
chrX:9539530-9539283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
209-627
               

               
Cow position:
               
chrX:20791609-20792037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 35
               

               
Conread position:
               
209-639
               

               
Cow position:
               
chrX:18456611-18456161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
209-640
               

               
Cow position:
               
chrX:30420736-30421171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
210-385
               

               
Cow position:
               
chrX:16291807-16291990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 98
               

               
Conread position:
               
210-387
               

               
Cow position:
               
chrX:18417095-18417273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
210-398
               

               
Cow position:
               
chrX:12304770-12304577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
210-637
               

               
Cow position:
               
chrX:21664515-21664952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
210-637
               

               
Cow position:
               
chrX:46072600-46073051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 99
               

               
Conread position:
               
210-656
               

               
Cow position:
               
chrX:23414166-23414616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 104
               

               
Conread position:
               
210-682
               

               
Cow position:
               
chrX:15049692-15049211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 35
               

               
Conread position:
               
211-416
               

               
Cow position:
               
chrX:8780252-8780043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 204
               

               
Conread position:
               
211-585
               

               
Cow position:
               
chrX:16514066-16514441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 74
               

               
Conread position:
               
211-642
               

               
Cow position:
               
chrX:25570776-25571230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 8
               

               
Conread position:
               
211-646
               

               
Cow position:
               
chrX:3160840-3161254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
211-646
               

               
Cow position:
               
chrX:6674706-6675161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 106
               

               
Conread position:
               
211-646
               

               
Cow position:
               
chrX:39545782-39546211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
211-648
               

               
Cow position:
               
chrX:17542170-17541724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
211-659
               

               
Cow position:
               
chrX:19879245-19878817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
68, 35
               

               
Conread position:
               
212-435
               

               
Cow position:
               
chrX:30979928-30980153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 196
               

               
Conread position:
               
212-533
               

               
Cow position:
               
chrX:18142252-18142579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 30
               

               
Conread position:
               
212-645
               

               
Cow position:
               
chrX:17964317-17964759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 34
               

               
Conread position:
               
212-646
               

               
Cow position:
               
chrX:25338392-25337941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
213-459
               

               
Cow position:
               
chrX:29407817-29408065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
64, 41
               

               
Conread position:
               
213-617
               

               
Cow position:
               
chrX:28930042-28929633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 88
               

               
Conread position:
               
213-646
               

               
Cow position:
               
chrX:20377170-20376729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
215-455
               

               
Cow position:
               
chrX:48089199-48089441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
65, 188
               

               
Conread position:
               
215-620
               

               
Cow position:
               
chrX:8918038-8917642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 74
               

               
Conread position:
               
215-648
               

               
Cow position:
               
chrX:5046709-5047137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 181
               

               
Conread position:
               
215-661
               

               
Cow position:
               
chrX:19930848-19930404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 87
               

               
Conread position:
               
216-501
               

               
Cow position:
               
chrX:22326318-22326030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
216-580
               

               
Cow position:
               
chrX:25388048-25388409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 30
               

               
Conread position:
               
216-639
               

               
Cow position:
               
chrX:15329846-15329422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 190
               

               
Conread position:
               
219-604
               

               
Cow position:
               
chrX:47178343-47177958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
158, 66
               

               
Conread position:
               
222-632
               

               
Cow position:
               
chrX:630112-630532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
222-637
               

               
Cow position:
               
chrX:17726170-17725749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
17, 9
               

               
Conread position:
               
222-648
               

               
Cow position:
               
chrX:42171101-42171539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
223-633
               

               
Cow position:
               
chrX:6234268-6234672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
113, 16
               

               
Conread position:
               
223-648
               

               
Cow position:
               
chrX:48249018-48248583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 39
               

               
Conread position:
               
224-422
               

               
Cow position:
               
chrX:23179086-23179287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
224-646
               

               
Cow position:
               
chrX:29761488-29761920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
60, 191
               

               
Conread position:
               
224-648
               

               
Cow position:
               
chrX:1615842-1616291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 202
               

               
Conread position:
               
225-646
               

               
Cow position:
               
chrX:28787535-28787128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
226-366
               

               
Cow position:
               
chrX:8103099-8103235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
226-696
               

               
Cow position:
               
chrX:37119789-37119311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
50, 71
               

               
Conread position:
               
228-612
               

               
Cow position:
               
chrX:31340902-31340501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 210
               

               
Conread position:
               
229-458
               

               
Cow position:
               
chrX:35759745-35759978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 209
               

               
Conread position:
               
231-612
               

               
Cow position:
               
chrX:43730036-43730418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
231-640
               

               
Cow position:
               
chrX:46532308-46532741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
231-648
               

               
Cow position:
               
chrX:34238905-34238481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
232-377
               

               
Cow position:
               
chrX:10289442-10289589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
133, 17
               

               
Conread position:
               
233-648
               

               
Cow position:
               
chrX:31373719-31373334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
235-627
               

               
Cow position:
               
chrX:26940335-26940710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
235-661
               

               
Cow position:
               
chrX:27393840-27394267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 65
               

               
Conread position:
               
237-412
               

               
Cow position:
               
chrX:159576-159753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
238-389
               

               
Cow position:
               
chrX:4446883-4446735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
238-648
               

               
Cow position:
               
chrX:8731269-8730839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
240-697
               

               
Cow position:
               
chrX:12309212-12309679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
242-651
               

               
Cow position:
               
chrX:2301102-2300690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 164
               

               
Conread position:
               
242-656
               

               
Cow position:
               
chrX:39126504-39126090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 173
               

               
Conread position:
               
243-387
               

               
Cow position:
               
chrX:3951217-3951071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
244-412
               

               
Cow position:
               
chrX:16419322-16419153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
246-532
               

               
Cow position:
               
chrX:6656556-6656263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
56, 188
               

               
Conread position:
               
246-642
               

               
Cow position:
               
chrX:47744261-47743841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
248-544
               

               
Cow position:
               
chrX:41027325-41027022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
248-641
               

               
Cow position:
               
chrX:17231902-17231501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 16
               

               
Conread position:
               
249-611
               

               
Cow position:
               
chrX:18216439-18216074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 127
               

               
Conread position:
               
250-429
               

               
Cow position:
               
chrX:43980906-43980726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
18, 170
               

               
Conread position:
               
250-632
               

               
Cow position:
               
chrX:17042852-17042466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 116
               

               
Conread position:
               
250-639
               

               
Cow position:
               
chrX:22822218-22821816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
250-645
               

               
Cow position:
               
chrX:31250552-31250155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
250-649
               

               
Cow position:
               
chrX:16416666-16416267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
252-646
               

               
Cow position:
               
chrX:878216-878609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
253-457
               

               
Cow position:
               
chrX:37761037-37760847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
253-618
               

               
Cow position:
               
chrX:9425591-9425951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
256-638
               

               
Cow position:
               
chrX:17888258-17888636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
256-657
               

               
Cow position:
               
chrX:618844-619257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
8, 47
               

               
Conread position:
               
257-684
               

               
Cow position:
               
chrX:25418988-25419439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
259-638
               

               
Cow position:
               
chrX:3154084-3154476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
259-642
               

               
Cow position:
               
chrX:9252003-9252412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
261-648
               

               
Cow position:
               
chrX:29289732-29289336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
262-615
               

               
Cow position:
               
chrX:46587979-46587611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
262-629
               

               
Cow position:
               
chrX:23092028-23091660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
262-656
               

               
Cow position:
               
chrX:23513865-23514266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 7
               

               
Conread position:
               
262-666
               

               
Cow position:
               
chrX:33855065-33855491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
46, 31
               

               
Conread position:
               
263-545
               

               
Cow position:
               
chrX:11084909-11085193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
263-640
               

               
Cow position:
               
chrX:45502302-45501916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
263-642
               

               
Cow position:
               
chrX:28134494-28134112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
43, 38
               

               
Conread position:
               
263-648
               

               
Cow position:
               
chrX:22482536-22482929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
263-650
               

               
Cow position:
               
chrX:13382481-13382082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
43, 38
               

               
Conread position:
               
263-673
               

               
Cow position:
               
chrX:41526373-41526785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
136, 103
               

               
Conread position:
               
264-646
               

               
Cow position:
               
chrX:11082468-11082851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 20
               

               
Conread position:
               
267-648
               

               
Cow position:
               
chrX:32743685-32743298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 166
               

               
Conread position:
               
271-639
               

               
Cow position:
               
chrX:42469796-42470168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
37, 15
               

               
Conread position:
               
273-654
               

               
Cow position:
               
chrX:29032554-29032173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 30
               

               
Conread position:
               
275-705
               

               
Cow position:
               
chrX:33493920-33493477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
33, 26
               

               
Conread position:
               
276-487
               

               
Cow position:
               
chrX:39097652-39097454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
276-566
               

               
Cow position:
               
chrX:33590858-33590570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 84
               

               
Conread position:
               
276-631
               

               
Cow position:
               
chrX:13177333-13177688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
276-645
               

               
Cow position:
               
chrX:28580363-28579984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 36
               

               
Conread position:
               
276-649
               

               
Cow position:
               
chrX:126910-126551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
277-540
               

               
Cow position:
               
chrX:41071072-41070806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
186, 52
               

               
Conread position:
               
277-632
               

               
Cow position:
               
chrX:17744198-17743836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 78
               

               
Conread position:
               
277-654
               

               
Cow position:
               
chrX:16283801-16284193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 150
               

               
Conread position:
               
277-657
               

               
Cow position:
               
chrX:10106831-10107224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 78
               

               
Conread position:
               
278-606
               

               
Cow position:
               
chrX:23785788-23785456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 159
               

               
Conread position:
               
278-632
               

               
Cow position:
               
chrX:4865371-4865027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
278-639
               

               
Cow position:
               
chrX:5017281-5017639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
278-645
               

               
Cow position:
               
chrX:45113762-45113391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
278-646
               

               
Cow position:
               
chrX:12290860-12290498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 23
               

               
Conread position:
               
278-648
               

               
Cow position:
               
chrX:34402147-34401757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
279-564
               

               
Cow position:
               
chrX:25193797-25193505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
181, 76
               

               
Conread position:
               
279-570
               

               
Cow position:
               
chrX:31252547-31252253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
183, 86
               

               
Conread position:
               
279-581
               

               
Cow position:
               
chrX:6407683-6407376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
279-591
               

               
Cow position:
               
chrX:32821168-32820847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
279-599
               

               
Cow position:
               
chrX:31312169-31311835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
279-601
               

               
Cow position:
               
chrX:8869261-8869601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 156
               

               
Conread position:
               
279-617
               

               
Cow position:
               
chrX:38853338-38852988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
279-621
               

               
Cow position:
               
chrX:12979694-12980043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-622
               

               
Cow position:
               
chrX:27175138-27174781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
279-631
               

               
Cow position:
               
chrX:41674245-41673880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
279-631
               

               
Cow position:
               
chrX:44397149-44396792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-632
               

               
Cow position:
               
chrX:37072529-37072182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
279-638
               

               
Cow position:
               
chrX:20887500-20887874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
279-638
               

               
Cow position:
               
chrX:34565423-34565067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
279-638
               

               
Cow position:
               
chrX:37489858-37489500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
279-638
               

               
Cow position:
               
chrX:42247042-42247414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-639
               

               
Cow position:
               
chrX:5900602-5900226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 268
               

               
Conread position:
               
279-640
               

               
Cow position:
               
chrX:6278358-6278738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
279-640
               

               
Cow position:
               
chrX:35288795-35288428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-641
               

               
Cow position:
               
chrX:9201688-9201314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-642
               

               
Cow position:
               
chrX:33640115-33639737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-643
               

               
Cow position:
               
chrX:29601688-29602065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-645
               

               
Cow position:
               
chrX:37232547-37232172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chrX:8797389-8797010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chrX:34503060-34502682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-646
               

               
Cow position:
               
chrX:41878794-41879169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 26
               

               
Conread position:
               
279-647
               

               
Cow position:
               
chrX:28865866-28866231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-647
               

               
Cow position:
               
chrX:38218856-38218476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:152040-151661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:11656221-11655846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:14599672-14599293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:25035242-25035627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:25815762-25816136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:31436614-31436240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:35269001-35268650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:38006631-38007008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:40269632-40269236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
279-648
               

               
Cow position:
               
chrX:40557539-40557916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-649
               

               
Cow position:
               
chrX:13647645-13648025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 128
               

               
Conread position:
               
279-650
               

               
Cow position:
               
chrX:40035300-40035691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
279-656
               

               
Cow position:
               
chrX:11562286-11561905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 80
               

               
Conread position:
               
279-656
               

               
Cow position:
               
chrX:38549587-38549200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 22
               

               
Conread position:
               
279-656
               

               
Cow position:
               
chrX:42492384-42492758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
279-658
               

               
Cow position:
               
chrX:36976091-36975698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
280-585
               

               
Cow position:
               
chrX:29680122-29680437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
280-629
               

               
Cow position:
               
chrX:11633821-11633457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
280-638
               

               
Cow position:
               
chrX:35543026-35542661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
280-646
               

               
Cow position:
               
chrX:38094381-38094763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
280-648
               

               
Cow position:
               
chrX:5872456-5872073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
280-648
               

               
Cow position:
               
chrX:15147058-15147426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
280-648
               

               
Cow position:
               
chrX:30163144-30162757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 157
               

               
Conread position:
               
280-661
               

               
Cow position:
               
chrX:9635052-9635434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
281-647
               

               
Cow position:
               
chrX:3654746-3654365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 53
               

               
Conread position:
               
281-656
               

               
Cow position:
               
chrX:2029523-2029142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 141
               

               
Conread position:
               
285-656
               

               
Cow position:
               
chrX:11454915-11455300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
288-637
               

               
Cow position:
               
chrX:9041113-9041458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
288-648
               

               
Cow position:
               
chrX:7278042-7277687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
289-646
               

               
Cow position:
               
chrX:18694801-18695159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
290-682
               

               
Cow position:
               
chrX:43076098-43075721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 75
               

               
Conread position:
               
291-459
               

               
Cow position:
               
chrX:7345211-7345046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
291-649
               

               
Cow position:
               
chrX:13322862-13323241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
291-659
               

               
Cow position:
               
chrX:28111637-28111255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 148
               

               
Conread position:
               
292-431
               

               
Cow position:
               
chrX:20011535-20011395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 123
               

               
Conread position:
               
293-520
               

               
Cow position:
               
chrX:40643104-40642875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
142, 51
               

               
Conread position:
               
294-590
               

               
Cow position:
               
chrX:7336966-7336645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
294-631
               

               
Cow position:
               
chrX:7722113-7721761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
294-637
               

               
Cow position:
               
chrX:47481921-47481570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
34, 128
               

               
Conread position:
               
294-646
               

               
Cow position:
               
chrX:7695874-7695523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
294-646
               

               
Cow position:
               
chrX:17795106-17794747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
294-646
               

               
Cow position:
               
chrX:34532645-34532293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
294-647
               

               
Cow position:
               
chrX:27431793-27432158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
294-648
               

               
Cow position:
               
chrX:7572031-7571666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
13, 130
               

               
Conread position:
               
294-648
               

               
Cow position:
               
chrX:9161700-9161348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 73
               

               
Conread position:
               
294-656
               

               
Cow position:
               
chrX:39558224-39558597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
294-656
               

               
Cow position:
               
chrX:41884287-41884666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
294-656
               

               
Cow position:
               
chrX:44961876-44961499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 7
               

               
Conread position:
               
294-660
               

               
Cow position:
               
chrX:1514294-1514656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 7
               

               
Conread position:
               
294-664
               

               
Cow position:
               
chrX:38642374-38642005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
294-675
               

               
Cow position:
               
chrX:6643392-6642991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 61
               

               
Conread position:
               
295-479
               

               
Cow position:
               
chrX:17635255-17635078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
295-621
               

               
Cow position:
               
chrX:12688960-12689284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 136
               

               
Conread position:
               
295-632
               

               
Cow position:
               
chrX:7361744-7362077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
295-632
               

               
Cow position:
               
chrX:35926081-35925743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
23, 128
               

               
Conread position:
               
295-637
               

               
Cow position:
               
chrX:12826875-12826518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
295-642
               

               
Cow position:
               
chrX:35632633-35632988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 112
               

               
Conread position:
               
295-648
               

               
Cow position:
               
chrX:37836701-37836346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
295-665
               

               
Cow position:
               
chrX:4631547-4631931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 132
               

               
Conread position:
               
296-632
               

               
Cow position:
               
chrX:24827430-24827103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 141
               

               
Conread position:
               
296-661
               

               
Cow position:
               
chrX:2147464-2147079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
297-632
               

               
Cow position:
               
chrX:47191278-47191623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
297-648
               

               
Cow position:
               
chrX:44053380-44053018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 124
               

               
Conread position:
               
297-656
               

               
Cow position:
               
chrX:21004806-21004436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 117
               

               
Conread position:
               
298-412
               

               
Cow position:
               
chrX:30745098-30744984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 36
               

               
Conread position:
               
298-661
               

               
Cow position:
               
chrX:4043745-4044103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
8, 110
               

               
Conread position:
               
299-567
               

               
Cow position:
               
chrX:36356226-36355957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
6, 25
               

               
Conread position:
               
299-639
               

               
Cow position:
               
chrX:37910566-37910222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 139
               

               
Conread position:
               
299-645
               

               
Cow position:
               
chrX:11313665-11314015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
299-646
               

               
Cow position:
               
chrX:20151977-20151612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
7, 270
               

               
Conread position:
               
299-652
               

               
Cow position:
               
chrX:6690139-6690492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
300-640
               

               
Cow position:
               
chrX:7351417-7351067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
6, 63
               

               
Conread position:
               
300-640
               

               
Cow position:
               
chrX:19690335-19689986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
6, 124
               

               
Conread position:
               
300-646
               

               
Cow position:
               
chrX:34441334-34441688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
6, 82
               

               
Conread position:
               
300-648
               

               
Cow position:
               
chrX:9416564-9416933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
300-656
               

               
Cow position:
               
chrX:905452-905098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
300-661
               

               
Cow position:
               
chrX:30729293-30729659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 127
               

               
Conread position:
               
303-568
               

               
Cow position:
               
chrX:23254088-23254373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 123
               

               
Conread position:
               
303-572
               

               
Cow position:
               
chrX:45633672-45633407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
303-642
               

               
Cow position:
               
chrX:37956468-37956132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
303-646
               

               
Cow position:
               
chrX:38936816-38936463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 107
               

               
Conread position:
               
303-659
               

               
Cow position:
               
chrX:11982254-11981880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 118
               

               
Conread position:
               
303-666
               

               
Cow position:
               
chrX:11675182-11674808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
304-656
               

               
Cow position:
               
chrX:34543899-34543539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 112
               

               
Conread position:
               
305-632
               

               
Cow position:
               
chrX:22074914-22074576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 104
               

               
Conread position:
               
305-646
               

               
Cow position:
               
chrX:10411872-10412224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
23, 109
               

               
Conread position:
               
305-661
               

               
Cow position:
               
chrX:32623685-32623330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 123
               

               
Conread position:
               
305-666
               

               
Cow position:
               
chrX:26625557-26625935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
23, 109
               

               
Conread position:
               
305-670
               

               
Cow position:
               
chrX:42498933-42499292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
306-545
               

               
Cow position:
               
chrX:21566520-21566266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 131
               

               
Conread position:
               
306-642
               

               
Cow position:
               
chrX:3147314-3146967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 130
               

               
Conread position:
               
306-646
               

               
Cow position:
               
chrX:4632744-4633089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
22, 163
               

               
Conread position:
               
307-640
               

               
Cow position:
               
chrX:20697497-20697840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
309-620
               

               
Cow position:
               
chrX:18248400-18248100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 94
               

               
Conread position:
               
309-648
               

               
Cow position:
               
chrX:11844131-11844481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 276
               

               
Conread position:
               
309-648
               

               
Cow position:
               
chrX:32170779-32171122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 82
               

               
Conread position:
               
309-661
               

               
Cow position:
               
chrX:21816378-21816008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 115
               

               
Conread position:
               
310-646
               

               
Cow position:
               
chrX:25849014-25848681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
310-656
               

               
Cow position:
               
chrX:38935388-38935033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 122
               

               
Conread position:
               
311-620
               

               
Cow position:
               
chrX:27024240-27023934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
188, 113
               

               
Conread position:
               
315-648
               

               
Cow position:
               
chrX:13913179-13912839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 161
               

               
Conread position:
               
315-661
               

               
Cow position:
               
chrX:27680502-27680150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
316-523
               

               
Cow position:
               
chrX:26882902-26883107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 117
               

               
Conread position:
               
316-630
               

               
Cow position:
               
chrX:13245700-13245369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
316-644
               

               
Cow position:
               
chrX:37067418-37067097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
316-651
               

               
Cow position:
               
chrX:15994493-15994156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
43, 103
               

               
Conread position:
               
316-655
               

               
Cow position:
               
chrX:4554481-4554151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
316-660
               

               
Cow position:
               
chrX:2764964-2764619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
37, 104
               

               
Conread position:
               
316-660
               

               
Cow position:
               
chrX:25281381-25281720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 97
               

               
Conread position:
               
316-682
               

               
Cow position:
               
chrX:7509242-7508865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
12, 29
               

               
Conread position:
               
316-682
               

               
Cow position:
               
chrX:8558361-8558736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
317-632
               

               
Cow position:
               
chrX:21642380-21642702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
318-569
               

               
Cow position:
               
chrX:36559464-36559208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
41, 127
               

               
Conread position:
               
323-538
               

               
Cow position:
               
chrX:26493538-26493766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 116
               

               
Conread position:
               
323-646
               

               
Cow position:
               
chrX:4629604-4629929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 145
               

               
Conread position:
               
323-656
               

               
Cow position:
               
chrX:37137888-37138222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
323-682
               

               
Cow position:
               
chrX:13852549-13852205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
326-646
               

               
Cow position:
               
chrX:157685-158007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
326-648
               

               
Cow position:
               
chrX:26440693-26441020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 89
               

               
Conread position:
               
327-648
               

               
Cow position:
               
chrX:31948844-31949171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 105
               

               
Conread position:
               
333-640
               

               
Cow position:
               
chrX:18294003-18293700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
149, 103
               

               
Conread position:
               
334-637
               

               
Cow position:
               
chrX:13265543-13265849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 89
               

               
Conread position:
               
336-543
               

               
Cow position:
               
chrX:27449916-27450133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 85
               

               
Conread position:
               
336-639
               

               
Cow position:
               
chrX:14900651-14900952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
338-650
               

               
Cow position:
               
chrX:48227545-48227855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
342-660
               

               
Cow position:
               
chrX:38840955-38840635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
343-594
               

               
Cow position:
               
chrX:25967098-25966855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 99
               

               
Conread position:
               
343-648
               

               
Cow position:
               
chrX:36778480-36778166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 84
               

               
Conread position:
               
345-632
               

               
Cow position:
               
chrX:10437594-10437889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
349-584
               

               
Cow position:
               
chrX:46028918-46029157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 59
               

               
Conread position:
               
355-648
               

               
Cow position:
               
chrX:42875042-42874738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
114, 62
               

               
Conread position:
               
357-646
               

               
Cow position:
               
chrX:43647687-43647982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
359-548
               

               
Cow position:
               
chrX:18417535-18417728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 36
               

               
Conread position:
               
359-583
               

               
Cow position:
               
chrX:46146506-46146735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
77, 50
               

               
Conread position:
               
359-623
               

               
Cow position:
               
chrX:3579999-3579732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
359-632
               

               
Cow position:
               
chrX:25232648-25232366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
359-639
               

               
Cow position:
               
chrX:11589533-11589822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
86, 63
               

               
Conread position:
               
359-646
               

               
Cow position:
               
chrX:28845888-28845608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
359-646
               

               
Cow position:
               
chrX:40480814-40481109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
89, 45
               

               
Conread position:
               
359-646
               

               
Cow position:
               
chrX:41166907-41167202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
103, 67
               

               
Conread position:
               
359-648
               

               
Cow position:
               
chrX:1810105-1810401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
95, 50
               

               
Conread position:
               
359-648
               

               
Cow position:
               
chrX:19188986-19188696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
95, 58
               

               
Conread position:
               
359-648
               

               
Cow position:
               
chrX:24105679-24105386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 126
               

               
Conread position:
               
359-648
               

               
Cow position:
               
chrX:27508967-27509260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
109, 73
               

               
Conread position:
               
359-652
               

               
Cow position:
               
chrX:9226919-9227224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
95, 79
               

               
Conread position:
               
359-656
               

               
Cow position:
               
chrX:9855353-9855052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
359-661
               

               
Cow position:
               
chrX:8517927-8517623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
100, 77
               

               
Conread position:
               
359-661
               

               
Cow position:
               
chrX:39701280-39700974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
6, 44
               

               
Conread position:
               
360-563
               

               
Cow position:
               
chrX:8913977-8913765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
360-563
               

               
Cow position:
               
chrX:8915721-8915509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
360-616
               

               
Cow position:
               
chrX:43409063-43408790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
360-642
               

               
Cow position:
               
chrX:2467938-2467645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
360-648
               

               
Cow position:
               
chrX:23583615-23583318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
360-650
               

               
Cow position:
               
chrX:20710128-20709830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
361-616
               

               
Cow position:
               
chrX:10831437-10831704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 65
               

               
Conread position:
               
361-625
               

               
Cow position:
               
chrX:2186307-2186041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
361-648
               

               
Cow position:
               
chrX:21593340-21593043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
361-656
               

               
Cow position:
               
chrX:9954192-9953893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
130, 57
               

               
Conread position:
               
361-656
               

               
Cow position:
               
chrX:23970432-23970141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
107, 48
               

               
Conread position:
               
362-642
               

               
Cow position:
               
chrX:42461692-42461980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
362-649
               

               
Cow position:
               
chrX:48246795-48247073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 74
               

               
Conread position:
               
362-681
               

               
Cow position:
               
chrX:27771913-27772234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
57, 90
               

               
Conread position:
               
363-632
               

               
Cow position:
               
chrX:35681393-35681121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
36, 56
               

               
Conread position:
               
364-648
               

               
Cow position:
               
chrX:40452168-40452453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
364-654
               

               
Cow position:
               
chrX:26875831-26876127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
364-661
               

               
Cow position:
               
chrX:13785310-13785620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
365-638
               

               
Cow position:
               
chrX:34192719-34192447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
116, 31
               

               
Conread position:
               
365-645
               

               
Cow position:
               
chrX:40116466-40116188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
365-674
               

               
Cow position:
               
chrX:41199155-41198836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
367-648
               

               
Cow position:
               
chrX:17498132-17497856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
79, 56
               

               
Conread position:
               
369-563
               

               
Cow position:
               
chrX:24747349-24747550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
370-648
               

               
Cow position:
               
chrX:34991080-34990801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
92, 34
               

               
Conread position:
               
373-560
               

               
Cow position:
               
chrX:34994174-34993988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
373-618
               

               
Cow position:
               
chrX:28835861-28836110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
373-685
               

               
Cow position:
               
chrX:40648027-40647698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
374-562
               

               
Cow position:
               
chrX:29056158-29055966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 45
               

               
Conread position:
               
374-683
               

               
Cow position:
               
chrX:31571415-31571120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
379-659
               

               
Cow position:
               
chrX:10373354-10373058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
384-641
               

               
Cow position:
               
chrX:17271251-17271522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
385-674
               

               
Cow position:
               
chrX:13058602-13058314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
386-632
               

               
Cow position:
               
chrX:4482993-4482738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
389-661
               

               
Cow position:
               
chrX:26880617-26880357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
142, 23
               

               
Conread position:
               
392-642
               

               
Cow position:
               
chrX:488517-488256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
69, 43
               

               
Conread position:
               
392-658
               

               
Cow position:
               
chrX:17933446-17933712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
392-661
               

               
Cow position:
               
chrX:8681901-8682183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 188
               

               
Conread position:
               
392-661
               

               
Cow position:
               
chrX:40279841-40279568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
395-639
               

               
Cow position:
               
chrX:2648331-2648581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
405-632
               

               
Cow position:
               
chrX:19023454-19023217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 5
               

               
Conread position:
               
408-637
               

               
Cow position:
               
chrX:1728421-1728646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
408-648
               

               
Cow position:
               
chrX:35409662-35409428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
409-611
               

               
Cow position:
               
chrX:281130-280928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 15
               

               
Conread position:
               
409-631
               

               
Cow position:
               
chrX:30484199-30484428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
409-645
               

               
Cow position:
               
chrX:38439487-38439236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
410-645
               

               
Cow position:
               
chrX:28098119-28097888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 22
               

               
Conread position:
               
410-646
               

               
Cow position:
               
chrX:41743918-41743675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
410-648
               

               
Cow position:
               
chrX:20583026-20582790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
58, 8
               

               
Conread position:
               
410-648
               

               
Cow position:
               
chrX:23061444-23061214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 42
               

               
Conread position:
               
410-648
               

               
Cow position:
               
chrX:25238179-25237938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
19, 228
               

               
Conread position:
               
411-648
               

               
Cow position:
               
chrX:678566-678808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
411-648
               

               
Cow position:
               
chrX:20653389-20653155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
413-660
               

               
Cow position:
               
chrX:33827008-33827274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
414-656
               

               
Cow position:
               
chrX:35284624-35284369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 5
               

               
Conread position:
               
414-660
               

               
Cow position:
               
chrX:47756923-47757181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
37, 175
               

               
Conread position:
               
416-626
               

               
Cow position:
               
chrX:48236820-48236593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
416-639
               

               
Cow position:
               
chrX:45412656-45412886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
417-638
               

               
Cow position:
               
chrX:37048574-37048811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
417-639
               

               
Cow position:
               
chrX:40515881-40515669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
417-662
               

               
Cow position:
               
chrX:30832847-30833092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 62
               

               
Conread position:
               
418-630
               

               
Cow position:
               
chrX:19019107-19019334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 8
               

               
Conread position:
               
418-640
               

               
Cow position:
               
chrX:42338946-42339168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
418-682
               

               
Cow position:
               
chrX:40540140-40540415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
420-638
               

               
Cow position:
               
chrX:42381102-42381330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
8, 133
               

               
Conread position:
               
420-646
               

               
Cow position:
               
chrX:42086856-42086624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 213
               

               
Conread position:
               
420-654
               

               
Cow position:
               
chrX:24424391-24424633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
421-638
               

               
Cow position:
               
chrX:16789856-16790067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
202, 5
               

               
Conread position:
               
421-656
               

               
Cow position:
               
chrX:31745066-31745295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 5
               

               
Conread position:
               
424-633
               

               
Cow position:
               
chrX:25404350-25404558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
115, 43
               

               
Conread position:
               
425-648
               

               
Cow position:
               
chrX:7718848-7718613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
428-646
               

               
Cow position:
               
chrX:20504732-20504528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
434-648
               

               
Cow position:
               
chrX:15597019-15596798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
434-648
               

               
Cow position:
               
chrX:19015418-19015202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
435-655
               

               
Cow position:
               
chrX:27514853-27514622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 221
               

               
Conread position:
               
438-628
               

               
Cow position:
               
chrX:3395786-3395981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
42, 84
               

               
Conread position:
               
438-648
               

               
Cow position:
               
chrX:33020465-33020246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
438-658
               

               
Cow position:
               
chrX:21663286-21663059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
439-567
               

               
Cow position:
               
chrX:31273225-31273090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
439-584
               

               
Cow position:
               
chrX:30005246-30005093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
439-616
               

               
Cow position:
               
chrX:35273335-35273144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
448-655
               

               
Cow position:
               
chrX:43049314-43049099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 198
               

               
Conread position:
               
452-631
               

               
Cow position:
               
chrX:2700850-2701035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
453-646
               

               
Cow position:
               
chrX:24201147-24200957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 141
               

               
Conread position:
               
455-632
               

               
Cow position:
               
chrX:29509483-29509668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
455-642
               

               
Cow position:
               
chrX:15815043-15814863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
455-645
               

               
Cow position:
               
chrX:14924959-14924763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chrX:7178856-7178669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chrX:35609947-35609746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
455-648
               

               
Cow position:
               
chrX:47344252-47344054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
455-649
               

               
Cow position:
               
chrX:21064240-21064045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
455-649
               

               
Cow position:
               
chrX:34454623-34454428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
455-649
               

               
Cow position:
               
chrX:35387944-35388148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
455-661
               

               
Cow position:
               
chrX:2383447-2383236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
455-661
               

               
Cow position:
               
chrX:25411799-25411587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
455-661
               

               
Cow position:
               
chrX:42282386-42282179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 20
               

               
Conread position:
               
459-648
               

               
Cow position:
               
chrX:8899984-8899784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
461-648
               

               
Cow position:
               
chrX:26883182-26883374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
461-656
               

               
Cow position:
               
chrX:17122064-17122251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
162, 21
               

               
Conread position:
               
463-648
               

               
Cow position:
               
chrX:32978307-32978496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
464-617
               

               
Cow position:
               
chrX:38114136-38113979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
464-621
               

               
Cow position:
               
chrX:23696464-23696621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
465-656
               

               
Cow position:
               
chrX:47243329-47243527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
23, 10
               

               
Conread position:
               
466-648
               

               
Cow position:
               
chrX:16531940-16531759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
468-626
               

               
Cow position:
               
chrX:28856920-28856759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
468-632
               

               
Cow position:
               
chrX:24524815-24524648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
468-646
               

               
Cow position:
               
chrX:24169370-24169553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
468-647
               

               
Cow position:
               
chrX:36693175-36692996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
153, 35
               

               
Conread position:
               
469-644
               

               
Cow position:
               
chrX:9404055-9403881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
470-648
               

               
Cow position:
               
chrX:22329633-22329809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
470-670
               

               
Cow position:
               
chrX:30462229-30462423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
470-682
               

               
Cow position:
               
chrX:19228125-19228333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
471-640
               

               
Cow position:
               
chrX:46447890-46448059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
150, 131
               

               
Conread position:
               
471-646
               

               
Cow position:
               
chrX:39346845-39347024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
471-648
               

               
Cow position:
               
chrX:6012165-6012347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
471-652
               

               
Cow position:
               
chrX:6694494-6694674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
471-677
               

               
Cow position:
               
chrX:6607362-6607153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
13, 154
               

               
Conread position:
               
471-683
               

               
Cow position:
               
chrX:33632118-33631898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 25
               

               
Conread position:
               
472-642
               

               
Cow position:
               
chrX:38794667-38794495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
473-615
               

               
Cow position:
               
chrX:41192623-41192478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
8, 102
               

               
Conread position:
               
473-632
               

               
Cow position:
               
chrX:22873338-22873174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
473-632
               

               
Cow position:
               
chrX:34035139-34034973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
473-640
               

               
Cow position:
               
chrX:6659312-6659141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
473-646
               

               
Cow position:
               
chrX:5127854-5127680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
23, 142
               

               
Conread position:
               
473-646
               

               
Cow position:
               
chrX:29925644-29925816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
473-709
               

               
Cow position:
               
chrX:34009686-34009447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
137, 128
               

               
Conread position:
               
475-646
               

               
Cow position:
               
chrX:25301815-25301991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
476-607
               

               
Cow position:
               
chrX:18467683-18467550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
477-687
               

               
Cow position:
               
chrX:18989597-18989381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
65, 18
               

               
Conread position:
               
478-652
               

               
Cow position:
               
chrX:9538493-9538314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
478-658
               

               
Cow position:
               
chrX:9838073-9837888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
478-661
               

               
Cow position:
               
chrX:8519437-8519258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
145, 8
               

               
Conread position:
               
479-633
               

               
Cow position:
               
chrX:4409564-4409410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 132
               

               
Conread position:
               
479-645
               

               
Cow position:
               
chrX:20976145-20976299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
479-647
               

               
Cow position:
               
chrX:33205064-33205231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
479-647
               

               
Cow position:
               
chrX:45787580-45787415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
479-652
               

               
Cow position:
               
chrX:18468967-18468793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
19, 159
               

               
Conread position:
               
479-674
               

               
Cow position:
               
chrX:46315447-46315650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 154
               

               
Conread position:
               
479-682
               

               
Cow position:
               
chrX:16732803-16733007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
480-647
               

               
Cow position:
               
chrX:4942825-4942988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
142, 73
               

               
Conread position:
               
480-648
               

               
Cow position:
               
chrX:36249932-36250102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
480-656
               

               
Cow position:
               
chrX:5247193-5247014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
481-643
               

               
Cow position:
               
chrX:877098-877258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
144, 28
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chrX:11806085-11806257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chrX:15545822-15545657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chrX:38967576-38967410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
481-649
               

               
Cow position:
               
chrX:9997407-9997574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
84, 74
               

               
Conread position:
               
481-650
               

               
Cow position:
               
chrX:14884030-14884204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
481-656
               

               
Cow position:
               
chrX:7513442-7513266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
142, 119
               

               
Conread position:
               
481-656
               

               
Cow position:
               
chrX:46044976-46044796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
482-640
               

               
Cow position:
               
chrX:30763494-30763652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
482-640
               

               
Cow position:
               
chrX:46372813-46372975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 143
               

               
Conread position:
               
482-646
               

               
Cow position:
               
chrX:37299527-37299358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 144
               

               
Conread position:
               
482-648
               

               
Cow position:
               
chrX:11581868-11581694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
67, 43
               

               
Conread position:
               
482-656
               

               
Cow position:
               
chrX:19210465-19210644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
483-650
               

               
Cow position:
               
chrX:160107-160275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
59, 128
               

               
Conread position:
               
484-609
               

               
Cow position:
               
chrX:17516464-17516343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
485-639
               

               
Cow position:
               
chrX:10462559-10462406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
6, 11
               

               
Conread position:
               
486-612
               

               
Cow position:
               
chrX:16933393-16933267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
486-620
               

               
Cow position:
               
chrX:20752177-20752048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
486-632
               

               
Cow position:
               
chrX:8827588-8827736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
486-636
               

               
Cow position:
               
chrX:13191621-13191772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 86
               

               
Conread position:
               
486-639
               

               
Cow position:
               
chrX:24194030-24193878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
134, 8
               

               
Conread position:
               
486-645
               

               
Cow position:
               
chrX:18989873-18990036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
486-646
               

               
Cow position:
               
chrX:7806305-7806139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
486-646
               

               
Cow position:
               
chrX:25283227-25283384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
486-646
               

               
Cow position:
               
chrX:31473450-31473284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
486-647
               

               
Cow position:
               
chrX:48676000-48675838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
486-648
               

               
Cow position:
               
chrX:7382246-7382083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
486-648
               

               
Cow position:
               
chrX:15139622-15139785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 116
               

               
Conread position:
               
486-648
               

               
Cow position:
               
chrX:21795419-21795256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
486-648
               

               
Cow position:
               
chrX:27516452-27516292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 47
               

               
Conread position:
               
486-648
               

               
Cow position:
               
chrX:42507723-42507887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
486-648
               

               
Cow position:
               
chrX:43527426-43527263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
487-637
               

               
Cow position:
               
chrX:18812176-18812029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
487-646
               

               
Cow position:
               
chrX:10916671-10916516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
135, 62
               

               
Conread position:
               
487-661
               

               
Cow position:
               
chrX:20129048-20129222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
488-632
               

               
Cow position:
               
chrX:16324045-16324187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
488-646
               

               
Cow position:
               
chrX:4484067-4483910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
488-666
               

               
Cow position:
               
chrX:44908240-44908064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
134, 54
               

               
Conread position:
               
489-598
               

               
Cow position:
               
chrX:5150455-5150562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
489-640
               

               
Cow position:
               
chrX:32870864-32871018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
489-652
               

               
Cow position:
               
chrX:13360456-13360288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
490-633
               

               
Cow position:
               
chrX:25163738-25163593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
490-638
               

               
Cow position:
               
chrX:42500409-42500264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
490-639
               

               
Cow position:
               
chrX:37377343-37377499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
490-644
               

               
Cow position:
               
chrX:6640044-6639888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
490-646
               

               
Cow position:
               
chrX:41238448-41238601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
490-648
               

               
Cow position:
               
chrX:4269148-4269308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
78, 84
               

               
Conread position:
               
490-674
               

               
Cow position:
               
chrX:11448148-11448336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
51, 141
               

               
Conread position:
               
490-686
               

               
Cow position:
               
chrX:12852587-12852790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
493-630
               

               
Cow position:
               
chrX:9325005-9324870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
493-632
               

               
Cow position:
               
chrX:48536746-48536889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 83
               

               
Conread position:
               
493-640
               

               
Cow position:
               
chrX:26619445-26619595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
493-650
               

               
Cow position:
               
chrX:33886280-33886126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 122
               

               
Conread position:
               
493-660
               

               
Cow position:
               
chrX:13429367-13429530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
493-661
               

               
Cow position:
               
chrX:29874640-29874800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
494-646
               

               
Cow position:
               
chrX:29049879-29049732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
494-649
               

               
Cow position:
               
chrX:2523810-2523971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
495-621
               

               
Cow position:
               
chrX:25329930-25329801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chrX:21665680-21665817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
495-632
               

               
Cow position:
               
chrX:48684313-48684447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
127, 54
               

               
Conread position:
               
495-638
               

               
Cow position:
               
chrX:31059060-31058918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
495-645
               

               
Cow position:
               
chrX:31338894-31338739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
495-647
               

               
Cow position:
               
chrX:9360800-9360644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chrX:10865954-10866107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chrX:28846968-28847119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
495-648
               

               
Cow position:
               
chrX:46771054-46771212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
495-649
               

               
Cow position:
               
chrX:754876-754717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
495-649
               

               
Cow position:
               
chrX:30919474-30919633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
495-649
               

               
Cow position:
               
chrX:33466525-33466376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
495-653
               

               
Cow position:
               
chrX:37364655-37364502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
495-654
               

               
Cow position:
               
chrX:33816084-33815922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
495-656
               

               
Cow position:
               
chrX:21672469-21672303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
495-656
               

               
Cow position:
               
chrX:42530541-42530699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
128, 47
               

               
Conread position:
               
495-666
               

               
Cow position:
               
chrX:25205636-25205460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
495-675
               

               
Cow position:
               
chrX:32128069-32128245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
495-684
               

               
Cow position:
               
chrX:27002643-27002446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
496-631
               

               
Cow position:
               
chrX:16541761-16541899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 121
               

               
Conread position:
               
496-632
               

               
Cow position:
               
chrX:48195127-48195265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
496-640
               

               
Cow position:
               
chrX:6514370-6514519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
496-645
               

               
Cow position:
               
chrX:23563880-23564034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
496-646
               

               
Cow position:
               
chrX:27322955-27323105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
127, 118
               

               
Conread position:
               
496-647
               

               
Cow position:
               
chrX:42855325-42855169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chrX:15485714-15485868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chrX:32020209-32020362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chrX:40183433-40183590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
496-648
               

               
Cow position:
               
chrX:46722824-46722981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
496-656
               

               
Cow position:
               
chrX:37906881-37906715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
496-661
               

               
Cow position:
               
chrX:2206638-2206797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
126, 18
               

               
Conread position:
               
496-661
               

               
Cow position:
               
chrX:36154659-36154825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
496-682
               

               
Cow position:
               
chrX:41403889-41403700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 135
               

               
Conread position:
               
496-682
               

               
Cow position:
               
chrX:41410437-41410248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 135
               

               
Conread position:
               
497-639
               

               
Cow position:
               
chrX:37843632-37843489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
497-646
               

               
Cow position:
               
chrX:24231215-24231362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
497-654
               

               
Cow position:
               
chrX:25617996-25618158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
497-658
               

               
Cow position:
               
chrX:36133282-36133444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
497-661
               

               
Cow position:
               
chrX:42955390-42955222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
497-710
               

               
Cow position:
               
chrX:44731510-44731290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 171
               

               
Conread position:
               
498-619
               

               
Cow position:
               
chrX:46429947-46430068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 74
               

               
Conread position:
               
498-621
               

               
Cow position:
               
chrX:20787269-20787392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
81, 46
               

               
Conread position:
               
498-652
               

               
Cow position:
               
chrX:40364878-40365034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
499-648
               

               
Cow position:
               
chrX:4123741-4123595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
123, 47
               

               
Conread position:
               
499-649
               

               
Cow position:
               
chrX:3207653-3207803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
125, 42
               

               
Conread position:
               
499-656
               

               
Cow position:
               
chrX:20168117-20167956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
500-622
               

               
Cow position:
               
chrX:47046606-47046734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
500-646
               

               
Cow position:
               
chrX:5507587-5507437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
500-646
               

               
Cow position:
               
chrX:34079277-34079127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 13
               

               
Conread position:
               
500-648
               

               
Cow position:
               
chrX:27446599-27446448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
500-648
               

               
Cow position:
               
chrX:34754279-34754432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
501-616
               

               
Cow position:
               
chrX:26285887-26285772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
501-632
               

               
Cow position:
               
chrX:33823011-33822877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
503-648
               

               
Cow position:
               
chrX:13868599-13868454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
503-655
               

               
Cow position:
               
chrX:15344651-15344495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 76
               

               
Conread position:
               
505-661
               

               
Cow position:
               
chrX:37205627-37205475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
118, 56
               

               
Conread position:
               
510-656
               

               
Cow position:
               
chrX:33519520-33519369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
519-656
               

               
Cow position:
               
chrX:6277539-6277680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 99
               

               
Conread position:
               
531-646
               

               
Cow position:
               
chrX:8103214-8103331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
531-656
               

               
Cow position:
               
chrX:48578293-48578167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
532-640
               

               
Cow position:
               
chrX:616530-616638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
538-704
               

               
Cow position:
               
chrX:6654431-6654595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
85, 125
               

               
Conread position:
               
541-657
               

               
Cow position:
               
chrX:43310609-43310730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
543-645
               

               
Cow position:
               
chrX:27450155-27450258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
104
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
544-650
               

               
Cow position:
               
chrX:22325941-22325835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 43
               
Show alignments to all cow chromosomes.