Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8026K12.5 |
| Conread position: | 348-694 |
| Cow position: | chr1:56440155-56439821 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 6 |
| Conread position: | 427-672 |
| Cow position: | chr1:22440569-22440328 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 55, 93 |
| Conread position: | 433-686 |
| Cow position: | chr1:33538592-33538344 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 445-682 |
| Cow position: | chr1:85867383-85867151 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 37 |
| Conread position: | 445-691 |
| Cow position: | chr1:22774068-22774303 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 445-697 |
| Cow position: | chr1:52085188-52085425 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 446-697 |
| Cow position: | chr1:57742742-57742975 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 448-664 |
| Cow position: | chr1:62301399-62301602 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 448-665 |
| Cow position: | chr1:15366687-15366892 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 448-671 |
| Cow position: | chr1:97538307-97538079 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 448-688 |
| Cow position: | chr1:13054665-13054416 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 448-691 |
| Cow position: | chr1:91040551-91040323 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 448-695 |
| Cow position: | chr1:92661474-92661708 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 448-702 |
| Cow position: | chr1:6717141-6717393 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 448-705 |
| Cow position: | chr1:71453535-71453785 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 449-691 |
| Cow position: | chr1:31274034-31274272 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 450-650 |
| Cow position: | chr1:33230595-33230401 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 450-697 |
| Cow position: | chr1:1743015-1743260 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 451-690 |
| Cow position: | chr1:46398450-46398215 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 454-682 |
| Cow position: | chr1:12419015-12419238 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 454-695 |
| Cow position: | chr1:42505125-42505363 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 198, 28 |
| Conread position: | 455-691 |
| Cow position: | chr1:58194615-58194843 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 456-679 |
| Cow position: | chr1:12884318-12884535 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 456-686 |
| Cow position: | chr1:71146692-71146909 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 191, 24 |
| Conread position: | 456-691 |
| Cow position: | chr1:3451144-3450917 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 456-691 |
| Cow position: | chr1:18484189-18484420 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 456-691 |
| Cow position: | chr1:39627736-39627971 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 456-691 |
| Cow position: | chr1:53703494-53703712 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 456-691 |
| Cow position: | chr1:84778425-84778197 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 458-694 |
| Cow position: | chr1:33441483-33441707 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 460-697 |
| Cow position: | chr1:11424742-11424977 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 154, 22 |
| Conread position: | 462-664 |
| Cow position: | chr1:64974147-64973951 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 462-687 |
| Cow position: | chr1:4279082-4278874 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 462-688 |
| Cow position: | chr1:5540769-5540991 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 462-689 |
| Cow position: | chr1:65073463-65073682 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 462-691 |
| Cow position: | chr1:779897-779682 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 200, 15 |
| Conread position: | 462-691 |
| Cow position: | chr1:45859017-45858804 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 462-691 |
| Cow position: | chr1:58881747-58881969 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 462-697 |
| Cow position: | chr1:79207183-79206953 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 464-685 |
| Cow position: | chr1:41731826-41732042 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 464-691 |
| Cow position: | chr1:99858486-99858262 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 464-716 |
| Cow position: | chr1:33310053-33310324 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 485-671 |
| Cow position: | chr1:67519789-67519968 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 486-697 |
| Cow position: | chr1:37432544-37432340 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 491-691 |
| Cow position: | chr1:28624289-28624488 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 525-698 |
| Cow position: | chr1:60086788-60086615 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 67 |
| Conread position: | 526-658 |
| Cow position: | chr1:84526461-84526326 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 526-690 |
| Cow position: | chr1:81370799-81370641 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 527-682 |
| Cow position: | chr1:50272377-50272535 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 136, 84 |
| Conread position: | 530-698 |
| Cow position: | chr1:21932534-21932695 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 547-688 |
| Cow position: | chr1:5167665-5167526 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.