Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8026K12.5 |
| Conread position: | 431-688 |
| Cow position: | chr11:50133896-50134149 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 437-689 |
| Cow position: | chr11:6199833-6200076 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 83 |
| Conread position: | 442-693 |
| Cow position: | chr11:44348816-44348573 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 120, 40 |
| Conread position: | 446-672 |
| Cow position: | chr11:5665793-5665563 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 10, 111 |
| Conread position: | 446-691 |
| Cow position: | chr11:54669070-54668832 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 448-635 |
| Cow position: | chr11:15224952-15224771 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 114, 34 |
| Conread position: | 448-657 |
| Cow position: | chr11:26713007-26713212 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 163, 34 |
| Conread position: | 448-690 |
| Cow position: | chr11:40144590-40144817 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 448-690 |
| Cow position: | chr11:50190785-50191022 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 448-691 |
| Cow position: | chr11:15361391-15361165 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 448-691 |
| Cow position: | chr11:61754429-61754205 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 448-729 |
| Cow position: | chr11:26586224-26585939 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 450-656 |
| Cow position: | chr11:21525689-21525497 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 450-679 |
| Cow position: | chr11:25379295-25379519 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 450-697 |
| Cow position: | chr11:35502324-35502571 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 451-691 |
| Cow position: | chr11:74215972-74216206 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 452-691 |
| Cow position: | chr11:31126490-31126258 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 454-698 |
| Cow position: | chr11:2813413-2813181 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 456-681 |
| Cow position: | chr11:7443162-7443380 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 456-691 |
| Cow position: | chr11:27665925-27666160 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 456-693 |
| Cow position: | chr11:370483-370247 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 462-697 |
| Cow position: | chr11:28747979-28748212 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 462-697 |
| Cow position: | chr11:80003278-80003048 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 462-717 |
| Cow position: | chr11:86925092-86925336 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 464-691 |
| Cow position: | chr11:60008443-60008219 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 465-691 |
| Cow position: | chr11:8020186-8019964 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 470-694 |
| Cow position: | chr11:55115442-55115657 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 104, 12 |
| Conread position: | 470-699 |
| Cow position: | chr11:9062990-9063219 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 485-665 |
| Cow position: | chr11:21886330-21886499 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 485-687 |
| Cow position: | chr11:31206491-31206287 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 32, 129 |
| Conread position: | 486-690 |
| Cow position: | chr11:21922665-21922470 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 491-690 |
| Cow position: | chr11:30775698-30775896 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 123, 26 |
| Conread position: | 496-691 |
| Cow position: | chr11:77193514-77193709 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 506-691 |
| Cow position: | chr11:53270330-53270506 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 532-693 |
| Cow position: | chr11:42823222-42823380 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 545-688 |
| Cow position: | chr11:56868482-56868620 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.