Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8026K12.5 |
| Conread position: | 435-658 |
| Cow position: | chr5:624915-624699 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 438-688 |
| Cow position: | chr5:4989899-4989653 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 442-690 |
| Cow position: | chr5:34470763-34471003 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 444-688 |
| Cow position: | chr5:16211148-16211396 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 445-691 |
| Cow position: | chr5:40866208-40865974 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 446-689 |
| Cow position: | chr5:13940746-13940986 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 447-691 |
| Cow position: | chr5:21516853-21517081 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 448-665 |
| Cow position: | chr5:29336889-29337106 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 448-691 |
| Cow position: | chr5:50770052-50770286 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 448-698 |
| Cow position: | chr5:9675280-9675532 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 451-691 |
| Cow position: | chr5:32335761-32336000 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 72 |
| Conread position: | 452-691 |
| Cow position: | chr5:18001974-18002197 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 454-663 |
| Cow position: | chr5:32139641-32139849 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 454-665 |
| Cow position: | chr5:14215661-14215867 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 456-664 |
| Cow position: | chr5:57784064-57783868 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 456-689 |
| Cow position: | chr5:56096824-56097053 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 456-691 |
| Cow position: | chr5:33283172-33283392 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 456-691 |
| Cow position: | chr5:50227726-50227496 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 26 |
| Conread position: | 456-691 |
| Cow position: | chr5:65053930-65053709 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 456-697 |
| Cow position: | chr5:8232211-8232447 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 457-691 |
| Cow position: | chr5:10095512-10095752 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 460-690 |
| Cow position: | chr5:14136281-14136508 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 462-672 |
| Cow position: | chr5:57147899-57147689 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 462-691 |
| Cow position: | chr5:51361217-51361000 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 467-697 |
| Cow position: | chr5:70609273-70609051 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 490-697 |
| Cow position: | chr5:18583062-18582863 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 491-698 |
| Cow position: | chr5:31722505-31722705 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 491-698 |
| Cow position: | chr5:35990207-35990402 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 494-676 |
| Cow position: | chr5:17829356-17829534 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 161, 23 |
| Conread position: | 509-698 |
| Cow position: | chr5:24958726-24958916 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 83 |
| Conread position: | 510-690 |
| Cow position: | chr5:65096785-65096615 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 525-698 |
| Cow position: | chr5:35580532-35580361 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 531-689 |
| Cow position: | chr5:23452894-23453054 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 537-691 |
| Cow position: | chr5:31785112-31784964 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.