Cow genome map

Conread name: Ss1.1-Pig3-SRG8027G10.5

Conread position: 1-472
Cow position: chr17:22499417-22498945 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 14

Conread position: 1-548
Cow position: chr17:22473231-22473776 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 343
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 98, 32

Conread position: 3-480
Cow position: chr17:22589870-22589392 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 292
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 97, 147

Conread position: 3-481
Cow position: chr17:22452149-22451669 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 300
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 68, 55

Conread position: 3-487
Cow position: chr17:22452233-22451748 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 300
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 96, 398

Conread position: 3-532
Cow position: chr17:22552284-22551754 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 62

Conread position: 4-292
Cow position: chr17:22551779-22551490 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 181
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 4-388
Cow position: chr17:22589617-22589232 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 251
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 65, 52

Conread position: 4-532
Cow position: chr17:22499246-22498717 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 320
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 13, 8

Conread position: 4-532
Cow position: chr17:22552031-22551502 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 325
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 96, 325

Conread position: 4-532
Cow position: chr17:22552871-22552342 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 327
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 96, 495

Conread position: 4-544
Cow position: chr17:22552367-22551826 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 117

Conread position: 4-545
Cow position: chr17:22452400-22451858 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 60

Conread position: 7-454
Cow position: chr17:22551942-22551496 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 284
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 92, 7

Conread position: 7-545
Cow position: chr17:22589948-22589411 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 331
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 92, 6

Conread position: 7-551
Cow position: chr17:22452311-22451768 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 7

Conread position: 7-577
Cow position: chr17:22499073-22498505 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 351
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 62, 14

Conread position: 14-532
Cow position: chr17:22473409-22473929 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 134

Conread position: 14-534
Cow position: chr17:22552945-22552424 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 178

Conread position: 15-485
Cow position: chr17:22589690-22589219 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 296
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 50, 55

Conread position: 15-532
Cow position: chr17:22552524-22552006 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 56

Conread position: 15-532
Cow position: chr17:22590194-22589676 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 313
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 56, 50

Conread position: 15-545
Cow position: chr17:22590026-22589495 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 329
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 54, 50

Conread position: 16-360
Cow position: chr17:22589521-22589176 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 214
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 83, 143

Conread position: 16-481
Cow position: chr17:22590109-22589643 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 293
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 84, 135

Conread position: 16-532
Cow position: chr17:22552775-22552258 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 320
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 73, 49

Conread position: 16-544
Cow position: chr17:22552607-22552078 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 333
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 84, 193

Conread position: 16-544
Cow position: chr17:22553027-22552498 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 334
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 83, 162

Conread position: 73-544
Cow position: chr17:22473219-22473688 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 297
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 26, 44

Conread position: 78-544
Cow position: chr17:22499425-22498957 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 277
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 7, 166

Conread position: 189-534
Cow position: chr17:22553105-22552760 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 213
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 150, 139

Conread position: 192-540
Cow position: chr17:22499393-22499045 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 217
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 222-550
Cow position: chr17:22473201-22473526 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 201
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 577-779
Cow position: chr17:22473760-22473963 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 59, 39

Conread position: 577-835
Cow position: chr17:22551922-22551664 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 39, 60

Conread position: 577-841
Cow position: chr17:22452207-22451943 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 120, 110

Conread position: 577-841
Cow position: chr17:22452375-22452111 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 48, 60

Conread position: 577-841
Cow position: chr17:22473340-22473604 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 60, 56

Conread position: 577-841
Cow position: chr17:22473424-22473688 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 179
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 577-841
Cow position: chr17:22473592-22473856 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 577-841
Cow position: chr17:22498717-22498462 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 180, 0

Conread position: 577-841
Cow position: chr17:22498969-22498705 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 175
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 577-841
Cow position: chr17:22499053-22498789 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 173
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 577-841
Cow position: chr17:22499221-22498957 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 210, 206

Conread position: 577-841
Cow position: chr17:22551754-22551490 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 124, 130

Conread position: 577-841
Cow position: chr17:22552090-22551826 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 32, 57

Conread position: 577-841
Cow position: chr17:22552174-22551910 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 32, 50

Conread position: 577-841
Cow position: chr17:22552258-22551994 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 141

Conread position: 577-841
Cow position: chr17:22552342-22552078 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 59

Conread position: 577-841
Cow position: chr17:22552510-22552246 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 124, 141

Conread position: 577-841
Cow position: chr17:22552594-22552330 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 39, 60

Conread position: 577-841
Cow position: chr17:22552678-22552414 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 43, 60

Conread position: 577-841
Cow position: chr17:22552846-22552582 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 39, 50

Conread position: 577-841
Cow position: chr17:22589592-22589328 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 176
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 113, 109

Conread position: 577-841
Cow position: chr17:22589760-22589496 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 210, 206

Conread position: 577-841
Cow position: chr17:22589844-22589580 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 124, 130

Conread position: 577-841
Cow position: chr17:22589928-22589664 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 577-841
Cow position: chr17:22590012-22589748 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 124, 130

Conread position: 577-844
Cow position: chr17:22452039-22451772 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 217, 205

Conread position: 577-844
Cow position: chr17:22499137-22498870 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 179
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 55, 60

Conread position: 577-844
Cow position: chr17:22552006-22551739 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 39, 60

Conread position: 577-847
Cow position: chr17:22552930-22552659 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 39, 54

Conread position: 577-848
Cow position: chr17:22473508-22473779 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 135, 131

Conread position: 577-848
Cow position: chr17:22499305-22499034 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 578-841
Cow position: chr17:22499388-22499125 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 578-841
Cow position: chr17:22589507-22589244 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 42, 59

Conread position: 578-841
Cow position: chr17:22590179-22589916 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 169
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 579-826
Cow position: chr17:22451953-22451706 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 134, 128

Conread position: 579-828
Cow position: chr17:22589422-22589173 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 58

Conread position: 579-841
Cow position: chr17:22452121-22451859 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 129

Conread position: 579-841
Cow position: chr17:22552760-22552498 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 37, 44

Conread position: 579-841
Cow position: chr17:22589674-22589412 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 51

Conread position: 579-841
Cow position: chr17:22590094-22589832 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 579-854
Cow position: chr17:22498883-22498608 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 52

Conread position: 580-841
Cow position: chr17:22553011-22552750 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 186
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 36, 57

Conread position: 581-841
Cow position: chr17:22553094-22552834 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 174
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 120, 126

Conread position: 582-834
Cow position: chr17:22473681-22473934 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 0

Conread position: 582-840
Cow position: chr17:22498796-22498538 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 583-844
Cow position: chr17:22473262-22473523 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 587-835
Cow position: chr17:22590254-22590006 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 113, 125

Conread position: 587-846
Cow position: chr17:22452281-22452021 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 256, 0

Conread position: 592-835
Cow position: chr17:22553167-22552924 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 38

Conread position: 597-837
Cow position: chr17:22552406-22552166 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 12, 33

Conread position: 628-841
Cow position: chr17:22452408-22452195 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 85, 80

Conread position: 643-846
Cow position: chr17:22499409-22499203 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 5, 0

Conread position: 864-982
Cow position: chr17:22499330-22499212 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.