Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8027G10.5 |
| Conread position: | 1-544 |
| Cow position: | chr2:82799839-82800383 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 333 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 1-545 |
| Cow position: | chr2:82799587-82800132 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 162 |
| Conread position: | 2-329 |
| Cow position: | chr2:86465496-86465825 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 93, 119 |
| Conread position: | 4-382 |
| Cow position: | chr2:78755984-78756361 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 170 |
| Conread position: | 4-476 |
| Cow position: | chr2:86465164-86465635 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 287 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 95, 12 |
| Conread position: | 4-532 |
| Cow position: | chr2:78755232-78755757 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 327 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 105 |
| Conread position: | 4-532 |
| Cow position: | chr2:78755316-78755841 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 330 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 95, 21 |
| Conread position: | 4-534 |
| Cow position: | chr2:86465668-86466197 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 4-546 |
| Cow position: | chr2:86465332-86465873 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 5-495 |
| Cow position: | chr2:78754243-78754730 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 295 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 5-532 |
| Cow position: | chr2:78755065-78755591 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 331 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 94, 146 |
| Conread position: | 7-472 |
| Cow position: | chr2:78754985-78755448 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 304 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 92, 7 |
| Conread position: | 7-532 |
| Cow position: | chr2:78755737-78756262 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 316 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 13-463 |
| Cow position: | chr2:82800019-82800468 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 15-487 |
| Cow position: | chr2:78754823-78755296 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 16-525 |
| Cow position: | chr2:82799938-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 305 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 40-485 |
| Cow position: | chr2:82799458-82799904 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 288 |
| Conread position: | 87-545 |
| Cow position: | chr2:78754811-78755270 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 132-545 |
| Cow position: | chr2:82799467-82799880 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 293, 260 |
| Conread position: | 577-829 |
| Cow position: | chr2:78754102-78754351 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 577-841 |
| Cow position: | chr2:78754837-78755101 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 577-841 |
| Cow position: | chr2:78755089-78755352 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 135, 130 |
| Conread position: | 577-844 |
| Cow position: | chr2:78754921-78755188 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 108, 129 |
| Conread position: | 577-844 |
| Cow position: | chr2:78755257-78755522 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 50 |
| Conread position: | 577-844 |
| Cow position: | chr2:78755507-78755772 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 577-844 |
| Cow position: | chr2:82799783-82800050 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-849 |
| Cow position: | chr2:78755424-78755692 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 577-983 |
| Cow position: | chr2:78754517-78754931 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 269, 173 |
| Conread position: | 578-841 |
| Cow position: | chr2:82799532-82799795 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 134, 130 |
| Conread position: | 578-841 |
| Cow position: | chr2:86465440-86465703 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 578-844 |
| Cow position: | chr2:82799952-82800218 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 579-822 |
| Cow position: | chr2:82800205-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 579-837 |
| Cow position: | chr2:78755007-78755265 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 579-841 |
| Cow position: | chr2:82800037-82800299 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 141, 129 |
| Conread position: | 579-844 |
| Cow position: | chr2:82799617-82799882 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 113, 108 |
| Conread position: | 579-847 |
| Cow position: | chr2:82800121-82800390 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 105, 114 |
| Conread position: | 579-848 |
| Cow position: | chr2:78756096-78756362 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 581-840 |
| Cow position: | chr2:78755761-78756020 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 583-848 |
| Cow position: | chr2:78755679-78755944 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 129, 120 |
| Conread position: | 586-837 |
| Cow position: | chr2:78754442-78754692 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 586-841 |
| Cow position: | chr2:82799708-82799963 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 597-837 |
| Cow position: | chr2:86465963-86466203 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 597-844 |
| Cow position: | chr2:82799467-82799714 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 644-841 |
| Cow position: | chr2:78754820-78755017 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 62 |
Show alignments to all cow chromosomes.