Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8027G10.5 |
| Conread position: | 1-288 |
| Cow position: | chr24:17070771-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 3-360 |
| Cow position: | chr24:17070689-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-532 |
| Cow position: | chr24:17035896-17035366 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 3-545 |
| Cow position: | chr24:17036484-17035941 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 325 |
| Conread position: | 5-545 |
| Cow position: | chr24:17078365-17077824 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 7-293 |
| Cow position: | chr24:17013232-17013516 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 7 |
| Conread position: | 7-444 |
| Cow position: | chr24:17035386-17034950 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 94, 7 |
| Conread position: | 7-483 |
| Cow position: | chr24:17078109-17077634 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 7 |
| Conread position: | 7-528 |
| Cow position: | chr24:17070527-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 7 |
| Conread position: | 7-534 |
| Cow position: | chr24:17036310-17035784 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 7 |
| Conread position: | 7-544 |
| Cow position: | chr24:17070443-17070979 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 10 |
| Conread position: | 7-547 |
| Cow position: | chr24:17036226-17035687 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 7 |
| Conread position: | 15-532 |
| Cow position: | chr24:17035716-17035198 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 405 |
| Conread position: | 16-530 |
| Cow position: | chr24:17078018-17077503 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 417 |
| Conread position: | 16-532 |
| Cow position: | chr24:17035547-17035030 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 325 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 193 |
| Conread position: | 16-532 |
| Cow position: | chr24:17036135-17035618 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 169 |
| Conread position: | 16-547 |
| Cow position: | chr24:17035967-17035435 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 500 |
| Conread position: | 16-551 |
| Cow position: | chr24:17036051-17035515 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 193 |
| Conread position: | 16-551 |
| Cow position: | chr24:17036387-17035851 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 193 |
| Conread position: | 19-551 |
| Cow position: | chr24:17036551-17036019 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 6 |
| Conread position: | 20-234 |
| Cow position: | chr24:16986425-16986640 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 81, 161 |
| Conread position: | 49-355 |
| Cow position: | chr24:17013188-17013495 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 52, 101 |
| Conread position: | 49-545 |
| Cow position: | chr24:17078153-17077656 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 460 |
| Conread position: | 92-388 |
| Cow position: | chr24:17013147-17013444 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 183-545 |
| Cow position: | chr24:17070534-17070896 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 188-545 |
| Cow position: | chr24:17070455-17070812 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 107, 113 |
| Conread position: | 207-532 |
| Cow position: | chr24:17013179-17013504 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 123 |
| Conread position: | 535-844 |
| Cow position: | chr24:17078215-17077906 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-753 |
| Cow position: | chr24:17070883-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 115, 110 |
| Conread position: | 577-831 |
| Cow position: | chr24:17013252-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 144, 139 |
| Conread position: | 577-831 |
| Cow position: | chr24:17077669-17077417 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 577-833 |
| Cow position: | chr24:17035282-17035026 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 216, 206 |
| Conread position: | 577-835 |
| Cow position: | chr24:17035450-17035192 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 577-835 |
| Cow position: | chr24:17036038-17035780 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 577-841 |
| Cow position: | chr24:17035366-17035102 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 39, 54 |
| Conread position: | 577-841 |
| Cow position: | chr24:17035618-17035354 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 577-841 |
| Cow position: | chr24:17035702-17035438 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-841 |
| Cow position: | chr24:17035870-17035606 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-841 |
| Cow position: | chr24:17035954-17035690 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 47 |
| Conread position: | 577-841 |
| Cow position: | chr24:17036374-17036110 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 577-841 |
| Cow position: | chr24:17036542-17036278 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-844 |
| Cow position: | chr24:17036122-17035855 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-844 |
| Cow position: | chr24:17036290-17036023 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 120, 109 |
| Conread position: | 577-844 |
| Cow position: | chr24:17070631-17070898 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 577-844 |
| Cow position: | chr24:17077921-17077654 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 56, 60 |
| Conread position: | 577-844 |
| Cow position: | chr24:17078005-17077738 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 143, 139 |
| Conread position: | 577-844 |
| Cow position: | chr24:17078089-17077822 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 56, 60 |
| Conread position: | 577-851 |
| Cow position: | chr24:17035198-17034925 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 132, 122 |
| Conread position: | 578-841 |
| Cow position: | chr24:17070548-17070811 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 579-827 |
| Cow position: | chr24:17077835-17077587 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 579-841 |
| Cow position: | chr24:17036456-17036194 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 579-841 |
| Cow position: | chr24:17070717-17070979 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 133 |
| Conread position: | 579-844 |
| Cow position: | chr24:17036204-17035939 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 581-837 |
| Cow position: | chr24:17070803-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 586-841 |
| Cow position: | chr24:17070388-17070643 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 587-841 |
| Cow position: | chr24:17013178-17013432 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 588-841 |
| Cow position: | chr24:17036612-17036362 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 588-848 |
| Cow position: | chr24:17078330-17078070 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 588-941 |
| Cow position: | chr24:16986445-16986790 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 597-841 |
| Cow position: | chr24:17070483-17070727 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 624-841 |
| Cow position: | chr24:16986398-16986614 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 157, 15 |
| Conread position: | 628-844 |
| Cow position: | chr24:17035483-17035267 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 58 |
| Conread position: | 636-844 |
| Cow position: | chr24:17035727-17035519 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 642-841 |
| Cow position: | chr24:17013149-17013348 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 850-983 |
| Cow position: | chr24:17077960-17077827 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 864-979 |
| Cow position: | chr24:17035979-17035864 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 864-993 |
| Cow position: | chr24:17036399-17036270 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.