Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8027G10.5 |
| Conread position: | 1-313 |
| Cow position: | chr3:68027404-68027717 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 98, 177 |
| Conread position: | 1-420 |
| Cow position: | chr3:68045913-68046333 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 245 |
| Conread position: | 1-450 |
| Cow position: | chr3:62722013-62721563 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 64 |
| Conread position: | 1-484 |
| Cow position: | chr3:68045829-68046313 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 302 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 1-541 |
| Cow position: | chr3:62742753-62743273 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 98, 250 |
| Conread position: | 4-500 |
| Cow position: | chr3:68045666-68046161 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 4-544 |
| Cow position: | chr3:68027073-68027612 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 4-545 |
| Cow position: | chr3:62722260-62721720 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 7-545 |
| Cow position: | chr3:68027160-68027697 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 7-545 |
| Cow position: | chr3:68045753-68046290 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 7 |
| Conread position: | 14-534 |
| Cow position: | chr3:62722168-62721647 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 15-248 |
| Cow position: | chr3:68027502-68027736 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 15-484 |
| Cow position: | chr3:68027250-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 15-545 |
| Cow position: | chr3:62742269-62742794 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 15-548 |
| Cow position: | chr3:62742352-62742881 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 332 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 57, 46 |
| Conread position: | 16-506 |
| Cow position: | chr3:62722082-62721592 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 308 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 83, 436 |
| Conread position: | 17-368 |
| Cow position: | chr3:62742687-62743033 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 82, 48 |
| Conread position: | 17-529 |
| Cow position: | chr3:68027000-68027513 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 23-487 |
| Cow position: | chr3:68045599-68046064 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 49-418 |
| Cow position: | chr3:62743037-62743402 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 83-544 |
| Cow position: | chr3:62722351-62721889 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 290 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 37, 414 |
| Conread position: | 106-545 |
| Cow position: | chr3:68045599-68046038 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 281 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 309, 294 |
| Conread position: | 261-546 |
| Cow position: | chr3:68026993-68027278 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 77, 61 |
| Conread position: | 577-828 |
| Cow position: | chr3:77350824-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 46 |
| Conread position: | 577-829 |
| Cow position: | chr3:62743180-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 46 |
| Conread position: | 577-834 |
| Cow position: | chr3:68027180-68027437 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-834 |
| Cow position: | chr3:68045688-68045946 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 577-841 |
| Cow position: | chr3:62721985-62721721 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-841 |
| Cow position: | chr3:62722153-62721889 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 577-841 |
| Cow position: | chr3:68027348-68027612 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 212, 228 |
| Conread position: | 577-844 |
| Cow position: | chr3:62722069-62721802 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-844 |
| Cow position: | chr3:62742950-62743195 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 127, 47 |
| Conread position: | 577-844 |
| Cow position: | chr3:68027432-68027699 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-845 |
| Cow position: | chr3:62742618-62742881 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 577-846 |
| Cow position: | chr3:68027095-68027366 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 577-847 |
| Cow position: | chr3:68045857-68046128 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 135, 124 |
| Conread position: | 577-848 |
| Cow position: | chr3:62742283-62742553 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 577-848 |
| Cow position: | chr3:68027264-68027535 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 136, 121 |
| Conread position: | 577-848 |
| Cow position: | chr3:68045605-68045876 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-971 |
| Cow position: | chr3:68045941-68046359 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 280 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 578-844 |
| Cow position: | chr3:77350907-77350644 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 120, 129 |
| Conread position: | 579-826 |
| Cow position: | chr3:62721815-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-832 |
| Cow position: | chr3:62721899-62721646 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-841 |
| Cow position: | chr3:62722319-62722057 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 579-844 |
| Cow position: | chr3:62722235-62721970 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-844 |
| Cow position: | chr3:62742368-62742633 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 579-979 |
| Cow position: | chr3:62742783-62743186 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 284 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 30, 58 |
| Conread position: | 581-841 |
| Cow position: | chr3:62742538-62742793 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 581-841 |
| Cow position: | chr3:68027016-68027276 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 582-897 |
| Cow position: | chr3:68027521-68027834 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 591-844 |
| Cow position: | chr3:62743110-62743363 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 593-849 |
| Cow position: | chr3:62743033-62743284 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 596-841 |
| Cow position: | chr3:62722386-62722141 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 626-841 |
| Cow position: | chr3:62742248-62742462 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 64, 78 |
| Conread position: | 626-848 |
| Cow position: | chr3:68026977-68027199 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 636-844 |
| Cow position: | chr3:62742509-62742714 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 636-847 |
| Cow position: | chr3:68045580-68045792 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 75 |
| Conread position: | 636-848 |
| Cow position: | chr3:77350933-77350721 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 864-983 |
| Cow position: | chr3:68027155-68027274 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.