Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8027G10.5 |
| Conread position: | 1-248 |
| Cow position: | chr6:49341220-49341466 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 3-544 |
| Cow position: | chr6:49340634-49341176 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 50 |
| Conread position: | 4-332 |
| Cow position: | chr6:49341139-49341466 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 95, 147 |
| Conread position: | 4-374 |
| Cow position: | chr6:49396272-49396643 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 174 |
| Conread position: | 4-551 |
| Cow position: | chr6:49340385-49340931 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 4-551 |
| Cow position: | chr6:49396194-49396736 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 97, 37 |
| Conread position: | 14-545 |
| Cow position: | chr6:49340897-49341429 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 51 |
| Conread position: | 14-551 |
| Cow position: | chr6:49340561-49341099 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 14-551 |
| Cow position: | chr6:49340729-49341267 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 158 |
| Conread position: | 15-532 |
| Cow position: | chr6:49340814-49341332 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 70-544 |
| Cow position: | chr6:49340365-49340840 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 108 |
| Conread position: | 157-550 |
| Cow position: | chr6:49340369-49340762 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 324, 315 |
| Conread position: | 238-551 |
| Cow position: | chr6:49340366-49340679 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 127, 117 |
| Conread position: | 577-796 |
| Cow position: | chr6:49341248-49341465 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 577-834 |
| Cow position: | chr6:49341080-49341337 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 577-841 |
| Cow position: | chr6:49340912-49341176 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 131 |
| Conread position: | 577-841 |
| Cow position: | chr6:49396381-49396645 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 577-844 |
| Cow position: | chr6:49340492-49340759 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 124, 135 |
| Conread position: | 577-844 |
| Cow position: | chr6:49340576-49340843 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 577-844 |
| Cow position: | chr6:49340996-49341263 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 579-844 |
| Cow position: | chr6:49340410-49340675 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 133, 129 |
| Conread position: | 579-844 |
| Cow position: | chr6:49340662-49340927 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 579-844 |
| Cow position: | chr6:49340746-49341011 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 579-844 |
| Cow position: | chr6:49340830-49341095 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 579-844 |
| Cow position: | chr6:49341166-49341431 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 120, 125 |
| Conread position: | 579-846 |
| Cow position: | chr6:49396299-49396566 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-885 |
| Cow position: | chr6:49396719-49397029 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 591-835 |
| Cow position: | chr6:49396227-49396471 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 642-844 |
| Cow position: | chr6:49340389-49340591 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 70, 66 |
| Conread position: | 703-844 |
| Cow position: | chr6:49340366-49340507 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.