Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8027G10.5 |
| Conread position: | 1-449 |
| Cow position: | chrX:25310118-25310567 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 1-455 |
| Cow position: | chrX:29045113-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 7 |
| Conread position: | 1-469 |
| Cow position: | chrX:25324684-25324220 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 1-532 |
| Cow position: | chrX:25325779-25325247 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 330 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 57, 73 |
| Conread position: | 2-544 |
| Cow position: | chrX:25325694-25325151 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 67, 79 |
| Conread position: | 4-303 |
| Cow position: | chrX:29045680-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 4-483 |
| Cow position: | chrX:25325356-25324876 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 4-532 |
| Cow position: | chrX:29045197-29044668 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 54 |
| Conread position: | 4-534 |
| Cow position: | chrX:25325524-25324993 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 205 |
| Conread position: | 4-545 |
| Cow position: | chrX:25309953-25310495 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 338 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 4-545 |
| Cow position: | chrX:25325020-25324478 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 343 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 5-532 |
| Cow position: | chrX:25325437-25324911 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 318 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 6-438 |
| Cow position: | chrX:29045846-29045413 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 143 |
| Conread position: | 6-484 |
| Cow position: | chrX:25309789-25310266 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 7-532 |
| Cow position: | chrX:25324763-25324239 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 7-534 |
| Cow position: | chrX:25325183-25324657 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 14-295 |
| Cow position: | chrX:25310299-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 14-385 |
| Cow position: | chrX:29045019-29044647 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 14-544 |
| Cow position: | chrX:29045352-29044824 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 340 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 85, 23 |
| Conread position: | 15-314 |
| Cow position: | chrX:29045753-29045453 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 228 |
| Conread position: | 15-369 |
| Cow position: | chrX:25310216-25310570 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 15-532 |
| Cow position: | chrX:25325093-25324575 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 84, 227 |
| Conread position: | 16-235 |
| Cow position: | chrX:13826873-13826653 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 16-304 |
| Cow position: | chrX:14181231-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 54-546 |
| Cow position: | chrX:25309667-25310160 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 95-483 |
| Cow position: | chrX:12627342-12627728 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 175-545 |
| Cow position: | chrX:29045277-29044907 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 220, 229 |
| Conread position: | 577-765 |
| Cow position: | chrX:29044836-29044648 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-831 |
| Cow position: | chrX:25324491-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 577-836 |
| Cow position: | chrX:25325247-25324988 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 577-837 |
| Cow position: | chrX:25324575-25324315 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 122, 130 |
| Conread position: | 577-841 |
| Cow position: | chrX:25310230-25310494 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 214 |
| Conread position: | 577-841 |
| Cow position: | chrX:25324743-25324479 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 124, 144 |
| Conread position: | 577-841 |
| Cow position: | chrX:25324911-25324647 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-841 |
| Cow position: | chrX:25325415-25325151 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 32, 60 |
| Conread position: | 577-841 |
| Cow position: | chrX:25325499-25325235 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 56, 60 |
| Conread position: | 577-841 |
| Cow position: | chrX:25325583-25325319 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 127, 121 |
| Conread position: | 577-841 |
| Cow position: | chrX:25325751-25325487 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 577-841 |
| Cow position: | chrX:29045088-29044824 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 577-841 |
| Cow position: | chrX:29045172-29044908 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 124, 130 |
| Conread position: | 577-841 |
| Cow position: | chrX:29045739-29045475 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 124, 130 |
| Conread position: | 577-844 |
| Cow position: | chrX:25310062-25310329 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 577-844 |
| Cow position: | chrX:25325079-25324812 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 55, 60 |
| Conread position: | 577-844 |
| Cow position: | chrX:25325163-25324896 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 57 |
| Conread position: | 577-845 |
| Cow position: | chrX:12627443-12627709 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 577-847 |
| Cow position: | chrX:25325331-25325060 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 577-847 |
| Cow position: | chrX:29045004-29044733 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 577-848 |
| Cow position: | chrX:25310146-25310417 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 122, 133 |
| Conread position: | 577-961 |
| Cow position: | chrX:25310314-25310696 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 130 |
| Conread position: | 577-982 |
| Cow position: | chrX:29045655-29045247 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 578-833 |
| Cow position: | chrX:25324826-25324571 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 137, 131 |
| Conread position: | 578-840 |
| Cow position: | chrX:29044919-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 578-841 |
| Cow position: | chrX:25309811-25310074 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 578-841 |
| Cow position: | chrX:25309979-25310242 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 578-848 |
| Cow position: | chrX:12627778-12628048 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 151, 145 |
| Conread position: | 579-835 |
| Cow position: | chrX:25324993-25324737 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 579-841 |
| Cow position: | chrX:25309896-25310158 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 121, 127 |
| Conread position: | 579-848 |
| Cow position: | chrX:25324657-25324388 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 580-779 |
| Cow position: | chrX:12627864-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 581-835 |
| Cow position: | chrX:13826772-13826518 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 121, 129 |
| Conread position: | 581-841 |
| Cow position: | chrX:25309730-25309990 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 582-844 |
| Cow position: | chrX:29045251-29044989 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 588-841 |
| Cow position: | chrX:29045329-29045076 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 590-841 |
| Cow position: | chrX:29045810-29045559 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 597-841 |
| Cow position: | chrX:14181198-14180954 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 602-841 |
| Cow position: | chrX:25309667-25309906 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 638-844 |
| Cow position: | chrX:25325606-25325400 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 647-841 |
| Cow position: | chrX:29045837-29045643 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 649-847 |
| Cow position: | chrX:25325847-25325649 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 833-983 |
| Cow position: | chrX:29044974-29044826 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 843-983 |
| Cow position: | chrX:25325294-25325153 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 16 |
| Conread position: | 864-982 |
| Cow position: | chrX:29045029-29044911 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.