Cow genome map

Conread name: Ss1.1-Pig3-SRG8028K16.5

Conread position: 1-136
Cow position: chr13:48862143-48862008 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-149
Cow position: chr13:46329651-46329501 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 143, 0

Conread position: 1-151
Cow position: chr13:47022320-47022462 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-155
Cow position: chr13:20154952-20155107 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 26, 53

Conread position: 1-157
Cow position: chr13:15166770-15166928 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 62, 17

Conread position: 1-157
Cow position: chr13:20880975-20880817 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 67, 0

Conread position: 1-157
Cow position: chr13:32826503-32826347 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 56

Conread position: 1-158
Cow position: chr13:27525306-27525155 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 58

Conread position: 1-158
Cow position: chr13:43480012-43480168 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 58, 70

Conread position: 1-159
Cow position: chr13:19320487-19320646 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 65

Conread position: 1-160
Cow position: chr13:53573923-53574082 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 68, 57

Conread position: 1-161
Cow position: chr13:17745198-17745352 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 110, 0

Conread position: 1-162
Cow position: chr13:25817481-25817636 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 118, 0

Conread position: 1-163
Cow position: chr13:5758387-5758226 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 1-163
Cow position: chr13:12670496-12670333 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 109

Conread position: 1-163
Cow position: chr13:13501663-13501508 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 1-163
Cow position: chr13:54389066-54388904 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 58, 65

Conread position: 1-163
Cow position: chr13:54702141-54702302 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 64, 0

Conread position: 1-164
Cow position: chr13:21176367-21176206 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 1-165
Cow position: chr13:6153829-6153665 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 146, 58

Conread position: 1-165
Cow position: chr13:8374818-8374655 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 1-165
Cow position: chr13:11381768-11381605 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 70, 102

Conread position: 1-165
Cow position: chr13:11460588-11460738 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 1-165
Cow position: chr13:12202318-12202483 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 1-165
Cow position: chr13:12619160-12618997 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 1-165
Cow position: chr13:13260955-13261121 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 1-165
Cow position: chr13:15194780-15194615 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 1-165
Cow position: chr13:15529079-15528915 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-165
Cow position: chr13:15885067-15884903 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 73, 58

Conread position: 1-165
Cow position: chr13:15902979-15903133 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 1-165
Cow position: chr13:17114424-17114262 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 61, 111

Conread position: 1-165
Cow position: chr13:17439816-17439653 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 1-165
Cow position: chr13:17800027-17800189 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 23

Conread position: 1-165
Cow position: chr13:17821315-17821151 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-165
Cow position: chr13:17966253-17966092 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 56, 0

Conread position: 1-165
Cow position: chr13:18058295-18058129 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 64, 0

Conread position: 1-165
Cow position: chr13:18166687-18166850 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 1-165
Cow position: chr13:18696795-18696959 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 67, 149

Conread position: 1-165
Cow position: chr13:20679294-20679465 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 124, 57

Conread position: 1-165
Cow position: chr13:20706250-20706089 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 1-165
Cow position: chr13:21288130-21287970 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 1-165
Cow position: chr13:22085791-22085627 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 65, 72

Conread position: 1-165
Cow position: chr13:24585998-24586158 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 135
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 37, 0

Conread position: 1-165
Cow position: chr13:30693669-30693822 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 1-165
Cow position: chr13:31813831-31813988 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 1-165
Cow position: chr13:34263415-34263252 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 79, 0

Conread position: 1-165
Cow position: chr13:34281630-34281793 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 74, 0

Conread position: 1-165
Cow position: chr13:37484324-37484157 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 104

Conread position: 1-165
Cow position: chr13:37818799-37818632 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 1-165
Cow position: chr13:38329571-38329743 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 1-165
Cow position: chr13:41806727-41806892 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 67, 0

Conread position: 1-165
Cow position: chr13:45023257-45023095 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 64, 0

Conread position: 1-165
Cow position: chr13:51940689-51940853 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 56

Conread position: 1-165
Cow position: chr13:52922050-52922209 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 0

Conread position: 1-165
Cow position: chr13:54582827-54582994 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 1-165
Cow position: chr13:56686386-56686549 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 51, 115

Conread position: 1-165
Cow position: chr13:57494235-57494071 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 56

Conread position: 1-166
Cow position: chr13:20666434-20666270 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 63, 111

Conread position: 1-166
Cow position: chr13:23478985-23479145 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 70, 77

Conread position: 1-166
Cow position: chr13:37521421-37521262 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 1-167
Cow position: chr13:20684167-20684002 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 1-168
Cow position: chr13:48037575-48037741 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 71, 0

Conread position: 1-175
Cow position: chr13:971943-971763 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 67, 0

Conread position: 1-175
Cow position: chr13:19279050-19279218 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 2-165
Cow position: chr13:20288291-20288447 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 2-165
Cow position: chr13:25579234-25579070 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 141, 116

Conread position: 2-165
Cow position: chr13:26698544-26698380 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 50

Conread position: 2-182
Cow position: chr13:61977004-61976829 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 164, 54

Conread position: 3-162
Cow position: chr13:8402011-8402169 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 121, 142

Conread position: 3-163
Cow position: chr13:55316234-55316074 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 67

Conread position: 3-164
Cow position: chr13:49503575-49503415 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 3-165
Cow position: chr13:10099031-10098874 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 3-165
Cow position: chr13:19022228-19022392 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 3-165
Cow position: chr13:24369538-24369697 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 66, 0

Conread position: 3-165
Cow position: chr13:55674251-55674092 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 3-170
Cow position: chr13:21135944-21135779 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 4-181
Cow position: chr13:24376451-24376623 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 162, 107

Conread position: 5-165
Cow position: chr13:53566553-53566712 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 6-165
Cow position: chr13:10929033-10928876 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 6-165
Cow position: chr13:17292176-17292016 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 8-167
Cow position: chr13:12682584-12682426 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 61, 104

Conread position: 8-186
Cow position: chr13:60375528-60375350 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 158, 166

Conread position: 11-164
Cow position: chr13:626522-626676 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 124, 48

Conread position: 11-165
Cow position: chr13:19883072-19882920 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 14-163
Cow position: chr13:18172304-18172453 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 50, 59

Conread position: 14-165
Cow position: chr13:18852046-18852197 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 15-165
Cow position: chr13:17971062-17970911 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 82

Conread position: 17-165
Cow position: chr13:52199057-52199203 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 19-165
Cow position: chr13:17569129-17568982 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 137, 0

Conread position: 19-165
Cow position: chr13:20864043-20863899 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 125, 0

Conread position: 19-165
Cow position: chr13:55295650-55295506 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 20-166
Cow position: chr13:3701412-3701556 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 22-165
Cow position: chr13:24060360-24060222 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 32-165
Cow position: chr13:17021743-17021612 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 43, 25

Conread position: 35-165
Cow position: chr13:6389369-6389497 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 26

Conread position: 42-165
Cow position: chr13:35659747-35659870 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 10

Conread position: 51-163
Cow position: chr13:21235684-21235572 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 12, 82

Conread position: 52-166
Cow position: chr13:23960810-23960695 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 63-163
Cow position: chr13:18835207-18835307 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.