Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8028K16.5 |
| Conread position: | 1-122 |
| Cow position: | chr17:22017013-22017135 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-142 |
| Cow position: | chr17:40639018-40638882 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-147 |
| Cow position: | chr17:21478848-21478995 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-155 |
| Cow position: | chr17:4225428-4225574 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:28284957-28285115 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 66, 104 |
| Conread position: | 1-161 |
| Cow position: | chr17:21335621-21335781 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 56 |
| Conread position: | 1-161 |
| Cow position: | chr17:25612161-25612002 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-163 |
| Cow position: | chr17:1040816-1040657 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-163 |
| Cow position: | chr17:21325403-21325244 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-163 |
| Cow position: | chr17:25901271-25901108 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-164 |
| Cow position: | chr17:17059494-17059343 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-164 |
| Cow position: | chr17:23516871-23517032 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:908811-908655 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:1410167-1410330 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:1634421-1634580 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 1-165 |
| Cow position: | chr17:6329186-6329021 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 1-165 |
| Cow position: | chr17:10510586-10510749 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:11664514-11664679 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 68, 122 |
| Conread position: | 1-165 |
| Cow position: | chr17:12447330-12447493 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:12536394-12536559 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:15102823-15102975 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:15340681-15340843 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 1-165 |
| Cow position: | chr17:18109013-18109177 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 1-165 |
| Cow position: | chr17:18495446-18495611 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 1-165 |
| Cow position: | chr17:18592513-18592353 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 99 |
| Conread position: | 1-165 |
| Cow position: | chr17:21003755-21003919 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:21114883-21115041 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:24587695-24587531 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:24824313-24824158 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:25514052-25514214 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:31037306-31037471 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:32989547-32989391 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:32993553-32993709 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:33288586-33288745 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:33657997-33658161 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:33933674-33933839 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:35338850-35339006 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-165 |
| Cow position: | chr17:38647132-38646969 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 68, 107 |
| Conread position: | 1-166 |
| Cow position: | chr17:5422998-5423162 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 64, 100 |
| Conread position: | 1-166 |
| Cow position: | chr17:32009369-32009530 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 1-176 |
| Cow position: | chr17:36330886-36331069 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 121, 74 |
| Conread position: | 2-139 |
| Cow position: | chr17:34790995-34791131 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 2-163 |
| Cow position: | chr17:3503651-3503493 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 2-165 |
| Cow position: | chr17:32273617-32273777 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 2-165 |
| Cow position: | chr17:35126780-35126617 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-165 |
| Cow position: | chr17:40250497-40250335 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 3-160 |
| Cow position: | chr17:21758072-21758224 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 3-164 |
| Cow position: | chr17:27765341-27765180 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 3-165 |
| Cow position: | chr17:8690372-8690533 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 140, 60 |
| Conread position: | 3-165 |
| Cow position: | chr17:33290741-33290902 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 4-117 |
| Cow position: | chr17:25800814-25800925 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 4-164 |
| Cow position: | chr17:25616318-25616169 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 4-165 |
| Cow position: | chr17:4601478-4601635 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 5-165 |
| Cow position: | chr17:15333643-15333803 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-165 |
| Cow position: | chr17:21243720-21243874 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 6-163 |
| Cow position: | chr17:11215822-11215980 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 6-165 |
| Cow position: | chr17:20780575-20780420 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-164 |
| Cow position: | chr17:24786958-24787107 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 120, 51 |
| Conread position: | 8-163 |
| Cow position: | chr17:20990129-20990283 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 8-165 |
| Cow position: | chr17:13922545-13922388 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 8-165 |
| Cow position: | chr17:34207751-34207909 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 11-163 |
| Cow position: | chr17:6423825-6423672 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 11-165 |
| Cow position: | chr17:12591230-12591076 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-165 |
| Cow position: | chr17:12059034-12059185 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-164 |
| Cow position: | chr17:20992981-20993130 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 18-165 |
| Cow position: | chr17:25815655-25815513 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 19-165 |
| Cow position: | chr17:10458883-10459028 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 19-165 |
| Cow position: | chr17:26765071-26764926 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 93, 39 |
| Conread position: | 19-165 |
| Cow position: | chr17:42347171-42347315 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 20-165 |
| Cow position: | chr17:24821914-24821775 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 21-164 |
| Cow position: | chr17:32017825-32017970 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 27-165 |
| Cow position: | chr17:8836901-8837040 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 28-168 |
| Cow position: | chr17:1275571-1275430 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 40-162 |
| Cow position: | chr17:4436199-4436320 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 66-165 |
| Cow position: | chr17:12216064-12216164 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.