Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8028K16.5 |
| Conread position: | 1-116 |
| Cow position: | chr18:49038459-49038344 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 1-122 |
| Cow position: | chr18:31711567-31711687 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 111 |
| Conread position: | 1-122 |
| Cow position: | chr18:55119869-55119748 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-141 |
| Cow position: | chr18:49841279-49841138 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-159 |
| Cow position: | chr18:33008060-33007902 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-160 |
| Cow position: | chr18:9557976-9557824 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-161 |
| Cow position: | chr18:11691411-11691568 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 68, 62 |
| Conread position: | 1-161 |
| Cow position: | chr18:33299901-33299741 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-162 |
| Cow position: | chr18:29991513-29991680 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-162 |
| Cow position: | chr18:37002629-37002472 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-162 |
| Cow position: | chr18:42432089-42432255 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 1-162 |
| Cow position: | chr18:48713548-48713388 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 6 |
| Conread position: | 1-163 |
| Cow position: | chr18:4796969-4796809 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 8 |
| Conread position: | 1-163 |
| Cow position: | chr18:8171088-8171249 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 158, 56 |
| Conread position: | 1-163 |
| Cow position: | chr18:12113367-12113539 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-163 |
| Cow position: | chr18:39875262-39875421 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-163 |
| Cow position: | chr18:42479589-42479750 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:4884520-4884674 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:25647251-25647415 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:56183932-56183778 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 1-165 |
| Cow position: | chr18:5487242-5487086 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:8300016-8299849 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:10977213-10977371 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:16686338-16686501 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:18592470-18592312 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:19193368-19193530 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:20126304-20126141 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 1-165 |
| Cow position: | chr18:23766413-23766577 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:25206191-25206354 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:28101630-28101467 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:29058501-29058658 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:30794426-30794270 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 85 |
| Conread position: | 1-165 |
| Cow position: | chr18:32883304-32883142 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:44548915-44549079 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:45104444-45104605 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 147 |
| Conread position: | 1-165 |
| Cow position: | chr18:45571011-45570850 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:45903897-45904058 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:49100371-49100534 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:50082260-50082414 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:51190599-51190755 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 31 |
| Conread position: | 1-165 |
| Cow position: | chr18:55461709-55461872 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-165 |
| Cow position: | chr18:55505404-55505242 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 149, 51 |
| Conread position: | 1-166 |
| Cow position: | chr18:44262630-44262460 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 10, 76 |
| Conread position: | 1-180 |
| Cow position: | chr18:11832117-11831950 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-160 |
| Cow position: | chr18:30248140-30248290 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 2-165 |
| Cow position: | chr18:11183938-11183781 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 3-147 |
| Cow position: | chr18:54130336-54130480 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 3-164 |
| Cow position: | chr18:13507741-13507902 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-165 |
| Cow position: | chr18:5578303-5578142 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-165 |
| Cow position: | chr18:9974333-9974488 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 3-165 |
| Cow position: | chr18:28657916-28658073 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 3-165 |
| Cow position: | chr18:29356629-29356791 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-165 |
| Cow position: | chr18:42431616-42431771 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 4-165 |
| Cow position: | chr18:29958170-29958321 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 5-141 |
| Cow position: | chr18:43065523-43065388 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 5-164 |
| Cow position: | chr18:3370894-3370735 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-165 |
| Cow position: | chr18:1954596-1954754 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 58 |
| Conread position: | 5-165 |
| Cow position: | chr18:51212177-51212022 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 107 |
| Conread position: | 7-164 |
| Cow position: | chr18:55787918-55787765 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 7-165 |
| Cow position: | chr18:33407608-33407451 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 10-163 |
| Cow position: | chr18:8104954-8105108 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 10-165 |
| Cow position: | chr18:10576093-10575944 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 11-165 |
| Cow position: | chr18:9365906-9365752 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 11-165 |
| Cow position: | chr18:33896437-33896592 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 119 |
| Conread position: | 11-165 |
| Cow position: | chr18:38607214-38607059 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 14-141 |
| Cow position: | chr18:42751624-42751752 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 14-152 |
| Cow position: | chr18:1571251-1571388 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 14-163 |
| Cow position: | chr18:38985677-38985529 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 14-165 |
| Cow position: | chr18:4602029-4602174 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 18-179 |
| Cow position: | chr18:3132777-3132932 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 24-165 |
| Cow position: | chr18:36201650-36201790 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 120 |
| Conread position: | 32-165 |
| Cow position: | chr18:29388188-29388055 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-163 |
| Cow position: | chr18:12023689-12023797 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 68-165 |
| Cow position: | chr18:13293444-13293346 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.