Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8028K16.5 |
| Conread position: | 1-141 |
| Cow position: | chr20:38089986-38089847 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-155 |
| Cow position: | chr20:7738158-7738305 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-161 |
| Cow position: | chr20:14806960-14806801 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-162 |
| Cow position: | chr20:7438778-7438939 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-163 |
| Cow position: | chr20:7211113-7210953 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-163 |
| Cow position: | chr20:8547141-8546979 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 1-163 |
| Cow position: | chr20:12581881-12582037 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-163 |
| Cow position: | chr20:23846592-23846756 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-163 |
| Cow position: | chr20:28982775-28982612 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1-164 |
| Cow position: | chr20:11542215-11542371 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 1-164 |
| Cow position: | chr20:11550442-11550278 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-164 |
| Cow position: | chr20:23792677-23792523 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-164 |
| Cow position: | chr20:32866113-32866275 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 127 |
| Conread position: | 1-164 |
| Cow position: | chr20:39398554-39398398 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:3606887-3607045 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:5998598-5998757 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:6240447-6240610 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:7363036-7362880 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:8556196-8556359 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:8578322-8578159 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 1-165 |
| Cow position: | chr20:8702844-8702998 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:16935238-16935388 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:18320718-18320880 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:18379452-18379293 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 111 |
| Conread position: | 1-165 |
| Cow position: | chr20:20203291-20203127 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 69, 57 |
| Conread position: | 1-165 |
| Cow position: | chr20:22235380-22235226 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 53 |
| Conread position: | 1-165 |
| Cow position: | chr20:23103296-23103131 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:25009559-25009726 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 1-165 |
| Cow position: | chr20:28441400-28441241 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:28605283-28605115 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 92, 68 |
| Conread position: | 1-165 |
| Cow position: | chr20:31740146-31740309 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 1-165 |
| Cow position: | chr20:33363591-33363428 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 110 |
| Conread position: | 1-165 |
| Cow position: | chr20:34901645-34901480 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 1-165 |
| Cow position: | chr20:39266885-39267048 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 117, 6 |
| Conread position: | 1-165 |
| Cow position: | chr20:40511683-40511846 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 1-166 |
| Cow position: | chr20:39518080-39517917 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-167 |
| Cow position: | chr20:25162052-25162217 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 157 |
| Conread position: | 1-174 |
| Cow position: | chr20:19363289-19363461 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 62, 100 |
| Conread position: | 1-176 |
| Cow position: | chr20:8308093-8307917 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 64 |
| Conread position: | 1-180 |
| Cow position: | chr20:23505901-23505724 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 163, 76 |
| Conread position: | 2-165 |
| Cow position: | chr20:15548824-15548985 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 67, 127 |
| Conread position: | 2-165 |
| Cow position: | chr20:26996602-26996445 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 3-163 |
| Cow position: | chr20:24069877-24069717 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-164 |
| Cow position: | chr20:13269692-13269539 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-164 |
| Cow position: | chr20:35710245-35710084 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 99 |
| Conread position: | 4-129 |
| Cow position: | chr20:4786940-4787066 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 4-159 |
| Cow position: | chr20:32084009-32084164 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-161 |
| Cow position: | chr20:39019766-39019610 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 4-163 |
| Cow position: | chr20:38768390-38768543 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 4-165 |
| Cow position: | chr20:12420548-12420707 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 4-165 |
| Cow position: | chr20:22704365-22704203 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 4-167 |
| Cow position: | chr20:6424041-6423881 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 5-150 |
| Cow position: | chr20:17100432-17100287 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-163 |
| Cow position: | chr20:4206041-4205881 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 5-165 |
| Cow position: | chr20:10208878-10208717 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 5-181 |
| Cow position: | chr20:7659146-7659324 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 8-165 |
| Cow position: | chr20:6257995-6258149 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 8-165 |
| Cow position: | chr20:38818073-38817917 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 11-165 |
| Cow position: | chr20:5636544-5636395 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 12-165 |
| Cow position: | chr20:18618698-18618547 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 12-165 |
| Cow position: | chr20:32463458-32463610 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 27-165 |
| Cow position: | chr20:3781376-3781515 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 28-164 |
| Cow position: | chr20:22265200-22265333 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 35-165 |
| Cow position: | chr20:5826983-5826852 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 38-165 |
| Cow position: | chr20:27407838-27407963 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 41-181 |
| Cow position: | chr20:39154824-39154684 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-163 |
| Cow position: | chr20:18837130-18837243 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.