Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8028K16.5 |
| Conread position: | 1-120 |
| Cow position: | chr28:5138956-5139078 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-154 |
| Cow position: | chr28:25128922-25128768 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:12964605-12964449 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-160 |
| Cow position: | chr28:5204230-5204071 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 64 |
| Conread position: | 1-162 |
| Cow position: | chr28:4158990-4158835 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-162 |
| Cow position: | chr28:8140517-8140359 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-162 |
| Cow position: | chr28:16346496-16346650 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 1-163 |
| Cow position: | chr28:7549023-7549183 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-163 |
| Cow position: | chr28:30327053-30327215 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 1-164 |
| Cow position: | chr28:2131889-2132046 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-164 |
| Cow position: | chr28:4834809-4834967 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-164 |
| Cow position: | chr28:8787575-8787414 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:2737771-2737934 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:2862903-2862739 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 58, 84 |
| Conread position: | 1-165 |
| Cow position: | chr28:2872954-2872791 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 100 |
| Conread position: | 1-165 |
| Cow position: | chr28:2960795-2960958 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 1-165 |
| Cow position: | chr28:3023878-3024038 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:4071004-4070843 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 1-165 |
| Cow position: | chr28:4588135-4587973 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:6971313-6971470 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:9285335-9285500 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:10172381-10172536 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:10745249-10745083 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 147, 57 |
| Conread position: | 1-165 |
| Cow position: | chr28:11752104-11752267 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 67, 111 |
| Conread position: | 1-165 |
| Cow position: | chr28:12430641-12430481 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 1-165 |
| Cow position: | chr28:16204299-16204455 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:16370048-16370202 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:20124819-20124657 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:21844992-21844833 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:25057001-25056844 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:26220293-26220129 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-183 |
| Cow position: | chr28:13474335-13474154 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 165, 50 |
| Conread position: | 2-165 |
| Cow position: | chr28:11426507-11426668 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-165 |
| Cow position: | chr28:21868491-21868329 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-166 |
| Cow position: | chr28:7751266-7751424 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 3-160 |
| Cow position: | chr28:28164121-28163965 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-163 |
| Cow position: | chr28:5904765-5904608 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 3-164 |
| Cow position: | chr28:3256831-3256672 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 3-165 |
| Cow position: | chr28:4016564-4016412 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 3-165 |
| Cow position: | chr28:5437052-5437214 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-165 |
| Cow position: | chr28:11585169-11585331 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 3-165 |
| Cow position: | chr28:11884488-11884646 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 3-165 |
| Cow position: | chr28:25596664-25596506 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 110 |
| Conread position: | 4-165 |
| Cow position: | chr28:4090022-4090174 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 4-165 |
| Cow position: | chr28:22346053-22345893 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 4-165 |
| Cow position: | chr28:23007698-23007860 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 4-165 |
| Cow position: | chr28:33052068-33051902 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 5-162 |
| Cow position: | chr28:3914748-3914587 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 5-163 |
| Cow position: | chr28:4884225-4884387 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 111 |
| Conread position: | 5-165 |
| Cow position: | chr28:30746699-30746854 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 6-165 |
| Cow position: | chr28:10533905-10534058 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-165 |
| Cow position: | chr28:7607947-7608106 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 50 |
| Conread position: | 13-165 |
| Cow position: | chr28:33163439-33163590 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 18-160 |
| Cow position: | chr28:11079326-11079185 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 19-165 |
| Cow position: | chr28:3751331-3751191 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 19-165 |
| Cow position: | chr28:4536473-4536330 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 19-165 |
| Cow position: | chr28:10762678-10762533 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 19-165 |
| Cow position: | chr28:10863767-10863908 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 21-176 |
| Cow position: | chr28:14649365-14649211 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 24-163 |
| Cow position: | chr28:16363953-16364093 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 122, 77 |
| Conread position: | 30-165 |
| Cow position: | chr28:13290123-13290258 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 48-165 |
| Cow position: | chr28:23776036-23775923 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.