Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8028K16.5 |
| Conread position: | 1-137 |
| Cow position: | chr29:8926433-8926568 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 68, 103 |
| Conread position: | 1-149 |
| Cow position: | chr29:5063173-5063031 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-159 |
| Cow position: | chr29:22613458-22613299 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-162 |
| Cow position: | chr29:29176588-29176745 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-162 |
| Cow position: | chr29:42849253-42849093 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 1-163 |
| Cow position: | chr29:10156274-10156436 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 1-163 |
| Cow position: | chr29:23243850-23244011 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-164 |
| Cow position: | chr29:17301562-17301397 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 1-164 |
| Cow position: | chr29:45005601-45005757 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 71, 19 |
| Conread position: | 1-165 |
| Cow position: | chr29:1124683-1124522 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:1556959-1556799 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:2744239-2744405 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:19762299-19762143 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:22162221-22162386 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:22714695-22714857 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:25737386-25737551 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:26615692-26615855 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:27329921-27329759 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:28446221-28446389 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 1-165 |
| Cow position: | chr29:29314624-29314788 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:29769323-29769484 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:31674661-31674497 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 69, 101 |
| Conread position: | 1-165 |
| Cow position: | chr29:36530895-36530734 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:39111283-39111448 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:40117600-40117438 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 57 |
| Conread position: | 1-165 |
| Cow position: | chr29:43009056-43009215 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-167 |
| Cow position: | chr29:17607446-17607285 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-176 |
| Cow position: | chr29:12680184-12680012 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 165, 57 |
| Conread position: | 1-180 |
| Cow position: | chr29:34358950-34359129 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 1-181 |
| Cow position: | chr29:31594099-31594281 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 2-165 |
| Cow position: | chr29:27826550-27826393 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 3-135 |
| Cow position: | chr29:24578889-24578755 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 3-163 |
| Cow position: | chr29:9709721-9709565 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 68 |
| Conread position: | 3-165 |
| Cow position: | chr29:10456536-10456692 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 3-165 |
| Cow position: | chr29:34773711-34773867 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 4-165 |
| Cow position: | chr29:4480148-4480305 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 89, 13 |
| Conread position: | 4-165 |
| Cow position: | chr29:4520365-4520202 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 4-165 |
| Cow position: | chr29:25092135-25091979 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 4-165 |
| Cow position: | chr29:36217140-36216984 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 5-159 |
| Cow position: | chr29:34745634-34745788 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 11-161 |
| Cow position: | chr29:28196988-28197133 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 12-165 |
| Cow position: | chr29:22778158-22778311 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 46 |
| Conread position: | 19-163 |
| Cow position: | chr29:23983945-23984090 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 19-165 |
| Cow position: | chr29:9718757-9718902 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 19-165 |
| Cow position: | chr29:27588933-27588790 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 20-164 |
| Cow position: | chr29:24103530-24103677 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 32-165 |
| Cow position: | chr29:20903288-20903417 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 67-165 |
| Cow position: | chr29:21000608-21000510 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.