Cow genome map

Conread name: Ss1.1-Pig3-SRG8028K16.5

Conread position: 1-142
Cow position: chr4:38157065-38157207 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 68, 0

Conread position: 1-156
Cow position: chr4:51851229-51851075 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 148, 92

Conread position: 1-157
Cow position: chr4:21065059-21064905 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 1-159
Cow position: chr4:63964965-63965122 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 77

Conread position: 1-161
Cow position: chr4:17774327-17774489 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 1-161
Cow position: chr4:38952576-38952417 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 133
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 70, 56

Conread position: 1-162
Cow position: chr4:8413102-8413256 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 130, 37

Conread position: 1-162
Cow position: chr4:11897272-11897435 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 1-163
Cow position: chr4:19700121-19699969 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 1-163
Cow position: chr4:28839643-28839489 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 1-163
Cow position: chr4:33433233-33433401 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 59, 0

Conread position: 1-163
Cow position: chr4:34641703-34641864 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 62, 117

Conread position: 1-163
Cow position: chr4:54927417-54927577 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 107, 0

Conread position: 1-163
Cow position: chr4:66112048-66112210 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 57, 65

Conread position: 1-164
Cow position: chr4:19407974-19408138 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 58, 65

Conread position: 1-164
Cow position: chr4:20139492-20139663 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 136, 0

Conread position: 1-164
Cow position: chr4:21874198-21874036 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 69, 107

Conread position: 1-164
Cow position: chr4:25537570-25537407 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-165
Cow position: chr4:3421645-3421488 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 1-165
Cow position: chr4:3687945-3687784 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 1-165
Cow position: chr4:4186142-4185985 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 78, 19

Conread position: 1-165
Cow position: chr4:7571436-7571271 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 18, 72

Conread position: 1-165
Cow position: chr4:15905123-15904959 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 85, 92

Conread position: 1-165
Cow position: chr4:17111850-17112016 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 80, 70

Conread position: 1-165
Cow position: chr4:19097311-19097150 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 1-165
Cow position: chr4:19435278-19435120 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 1-165
Cow position: chr4:19463519-19463356 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 64, 0

Conread position: 1-165
Cow position: chr4:21232851-21233013 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 46

Conread position: 1-165
Cow position: chr4:21391789-21391952 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 1-165
Cow position: chr4:21531620-21531783 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 100

Conread position: 1-165
Cow position: chr4:23847028-23847187 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 72, 17

Conread position: 1-165
Cow position: chr4:27530141-27529978 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 72, 85

Conread position: 1-165
Cow position: chr4:35982019-35981854 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 1-165
Cow position: chr4:37915313-37915477 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 75, 12

Conread position: 1-165
Cow position: chr4:40414605-40414767 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 1-165
Cow position: chr4:42921834-42921991 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 135
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 147, 66

Conread position: 1-165
Cow position: chr4:44449483-44449645 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 149, 39

Conread position: 1-165
Cow position: chr4:47730881-47730719 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 62, 118

Conread position: 1-165
Cow position: chr4:51728102-51727937 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 10, 65

Conread position: 1-165
Cow position: chr4:54455319-54455482 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 77, 56

Conread position: 1-165
Cow position: chr4:58880938-58881102 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-165
Cow position: chr4:62472102-62471933 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 71

Conread position: 1-165
Cow position: chr4:62983530-62983689 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 1-165
Cow position: chr4:65919634-65919474 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 1-170
Cow position: chr4:38935382-38935211 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 145
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 68, 0

Conread position: 1-182
Cow position: chr4:24001942-24002126 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 55, 72

Conread position: 2-157
Cow position: chr4:4319130-4319278 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 2-159
Cow position: chr4:275485-275330 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 2-165
Cow position: chr4:14470547-14470709 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 112, 0

Conread position: 2-165
Cow position: chr4:53208315-53208156 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 2-182
Cow position: chr4:19582595-19582773 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 65, 87

Conread position: 3-163
Cow position: chr4:20299296-20299135 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 63, 70

Conread position: 3-163
Cow position: chr4:61897514-61897673 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 108, 61

Conread position: 3-165
Cow position: chr4:8947417-8947254 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 57, 89

Conread position: 3-165
Cow position: chr4:12049268-12049106 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 3-165
Cow position: chr4:12903842-12903679 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 3-165
Cow position: chr4:17186329-17186492 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 117, 35

Conread position: 3-165
Cow position: chr4:19119038-19118867 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 3-165
Cow position: chr4:24458082-24458238 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 108, 0

Conread position: 3-165
Cow position: chr4:34022564-34022726 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 74, 49

Conread position: 3-165
Cow position: chr4:46393458-46393296 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 36

Conread position: 3-165
Cow position: chr4:51899027-51898868 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 27, 0

Conread position: 3-181
Cow position: chr4:3283426-3283603 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 163, 62

Conread position: 3-188
Cow position: chr4:1419243-1419062 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 60, 15

Conread position: 4-159
Cow position: chr4:10379130-10378975 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 4-163
Cow position: chr4:37704288-37704129 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 4-165
Cow position: chr4:9815327-9815487 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 4-165
Cow position: chr4:13693652-13693813 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 4-165
Cow position: chr4:41867463-41867305 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 70, 106

Conread position: 4-165
Cow position: chr4:52748434-52748597 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 4-165
Cow position: chr4:54191109-54190949 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 13

Conread position: 4-181
Cow position: chr4:26011870-26011700 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 5-140
Cow position: chr4:17084319-17084455 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 5-163
Cow position: chr4:16799167-16799325 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 5-163
Cow position: chr4:36290643-36290491 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 5-165
Cow position: chr4:24744387-24744548 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 5-165
Cow position: chr4:63096055-63096212 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 63, 80

Conread position: 6-165
Cow position: chr4:47047913-47047754 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 65, 52

Conread position: 8-165
Cow position: chr4:11332109-11331953 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 8-165
Cow position: chr4:19744902-19744746 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 62, 7

Conread position: 8-165
Cow position: chr4:27291938-27292095 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 91
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 8-165
Cow position: chr4:38944240-38944400 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 49

Conread position: 10-165
Cow position: chr4:31136770-31136612 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 11-163
Cow position: chr4:33357949-33357797 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 14-165
Cow position: chr4:33612349-33612498 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 14-166
Cow position: chr4:14153105-14152948 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 15-165
Cow position: chr4:19438474-19438321 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 20-164
Cow position: chr4:49089795-49089651 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 58, 137

Conread position: 20-165
Cow position: chr4:18576766-18576912 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 44, 138

Conread position: 20-165
Cow position: chr4:22215649-22215791 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 20-165
Cow position: chr4:36893363-36893218 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 21-165
Cow position: chr4:48409265-48409405 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 45

Conread position: 23-165
Cow position: chr4:2141751-2141606 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 27-165
Cow position: chr4:10412379-10412239 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 35, 89

Conread position: 42-165
Cow position: chr4:16602069-16602192 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 71-160
Cow position: chr4:44072811-44072900 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.