Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8028K16.5 |
| Conread position: | 1-139 |
| Cow position: | chrX:22115260-22115396 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 1-152 |
| Cow position: | chrX:1466219-1466069 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-152 |
| Cow position: | chrX:45648931-45648781 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-157 |
| Cow position: | chrX:31436531-31436381 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-161 |
| Cow position: | chrX:42171237-42171397 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 1-162 |
| Cow position: | chrX:36068072-36067913 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 1-163 |
| Cow position: | chrX:6544314-6544153 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 88 |
| Conread position: | 1-164 |
| Cow position: | chrX:33000962-33000799 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 1-164 |
| Cow position: | chrX:34411903-34411738 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-164 |
| Cow position: | chrX:38853255-38853094 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-164 |
| Cow position: | chrX:40826694-40826858 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 147, 48 |
| Conread position: | 1-164 |
| Cow position: | chrX:45846158-45845995 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 1-165 |
| Cow position: | chrX:616202-616367 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 1-165 |
| Cow position: | chrX:618945-619109 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:6234392-6234558 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 59 |
| Conread position: | 1-165 |
| Cow position: | chrX:8869345-8869507 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:9201605-9201445 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:13647728-13647890 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 1-165 |
| Cow position: | chrX:13785303-13785468 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:14883899-14884063 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:17726032-17725869 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:18694870-18695028 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:19273650-19273827 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:20584385-20584219 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:21986234-21986397 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:26875824-26875988 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:26881508-26881673 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 72, 58 |
| Conread position: | 1-165 |
| Cow position: | chrX:29601771-29601935 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:31312086-31311924 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:33493836-33493673 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:34376999-34376842 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:34504992-34505152 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:34532577-34532416 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:37232464-37232308 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:40269548-40269383 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:40557622-40557786 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:40685271-40685436 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:42927767-42927924 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-165 |
| Cow position: | chrX:45414247-45414405 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-172 |
| Cow position: | chrX:9252106-9252272 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 158, 47 |
| Conread position: | 2-163 |
| Cow position: | chrX:41884356-41884517 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-165 |
| Cow position: | chrX:6414103-6413939 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 142, 55 |
| Conread position: | 2-165 |
| Cow position: | chrX:23563735-23563898 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 141, 56 |
| Conread position: | 2-165 |
| Cow position: | chrX:29542161-29542324 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-165 |
| Cow position: | chrX:42875039-42874876 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 141, 55 |
| Conread position: | 2-189 |
| Cow position: | chrX:46291193-46291010 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 3-151 |
| Cow position: | chrX:29050305-29050156 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-159 |
| Cow position: | chrX:34991091-34990936 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 102 |
| Conread position: | 3-161 |
| Cow position: | chrX:35224351-35224195 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 3-162 |
| Cow position: | chrX:43115206-43115050 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 3-165 |
| Cow position: | chrX:7509198-7509037 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 3-165 |
| Cow position: | chrX:9650969-9651130 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 3-165 |
| Cow position: | chrX:34192725-34192568 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-165 |
| Cow position: | chrX:7571959-7571799 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 4-165 |
| Cow position: | chrX:37574894-37574746 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 4-165 |
| Cow position: | chrX:37781055-37781216 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-165 |
| Cow position: | chrX:1615988-1616149 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 5-165 |
| Cow position: | chrX:13382384-13382224 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 145, 60 |
| Conread position: | 5-165 |
| Cow position: | chrX:23513962-23514120 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 6-165 |
| Cow position: | chrX:27431866-27432019 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-165 |
| Cow position: | chrX:22074847-22074695 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 7-181 |
| Cow position: | chrX:34792260-34792432 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 158, 50 |
| Conread position: | 8-165 |
| Cow position: | chrX:5118452-5118607 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 8-165 |
| Cow position: | chrX:19015487-19015333 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 8-167 |
| Cow position: | chrX:45976976-45976815 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 8-181 |
| Cow position: | chrX:40035392-40035565 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 15 |
| Conread position: | 12-151 |
| Cow position: | chrX:918678-918818 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 14-165 |
| Cow position: | chrX:41526478-41526626 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 16-165 |
| Cow position: | chrX:35542937-35542790 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 27-165 |
| Cow position: | chrX:31252448-31252313 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 27-165 |
| Cow position: | chrX:38439512-38439373 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 34-162 |
| Cow position: | chrX:34314055-34313927 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 40-165 |
| Cow position: | chrX:4750285-4750409 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 59-165 |
| Cow position: | chrX:34402002-34401893 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 64-163 |
| Cow position: | chrX:35387906-35388005 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.