• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8002L02.5
        

               
Conread position:
               
3-508
               

               
Cow position:
               
chr1:46930739-46930217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
25-508
               

               
Cow position:
               
chr1:68812688-68812204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
26-423
               

               
Cow position:
               
chr1:65726461-65726060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
26-508
               

               
Cow position:
               
chr1:58440067-58439560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
29-213
               

               
Cow position:
               
chr1:81357422-81357229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
29-484
               

               
Cow position:
               
chr1:30065612-30066090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
121, 19
               

               
Conread position:
               
32-507
               

               
Cow position:
               
chr1:92196215-92196709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
38-461
               

               
Cow position:
               
chr1:77104107-77103674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
88, 12
               

               
Conread position:
               
38-508
               

               
Cow position:
               
chr1:42888239-42887769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 12
               

               
Conread position:
               
39-461
               

               
Cow position:
               
chr1:7837517-7837067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
39-504
               

               
Cow position:
               
chr1:17009490-17009001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 170
               

               
Conread position:
               
41-467
               

               
Cow position:
               
chr1:89767287-89766836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 180
               

               
Conread position:
               
47-450
               

               
Cow position:
               
chr1:89112074-89112494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
50, 125
               

               
Conread position:
               
47-504
               

               
Cow position:
               
chr1:13251294-13250815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
47-508
               

               
Cow position:
               
chr1:66144951-66145437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 173
               

               
Conread position:
               
48-451
               

               
Cow position:
               
chr1:44701527-44701114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
48-500
               

               
Cow position:
               
chr1:58197186-58196724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 57
               

               
Conread position:
               
48-504
               

               
Cow position:
               
chr1:68610520-68610045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
48-508
               

               
Cow position:
               
chr1:19828727-19828258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 49
               

               
Conread position:
               
48-508
               

               
Cow position:
               
chr1:56644626-56644154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 39
               

               
Conread position:
               
48-508
               

               
Cow position:
               
chr1:63602537-63602051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 161
               

               
Conread position:
               
49-192
               

               
Cow position:
               
chr1:28413971-28413818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
49-249
               

               
Cow position:
               
chr1:97285402-97285200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-261
               

               
Cow position:
               
chr1:92008527-92008736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
104, 86
               

               
Conread position:
               
49-263
               

               
Cow position:
               
chr1:37421053-37420842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
49-278
               

               
Cow position:
               
chr1:7738967-7739204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
120, 168
               

               
Conread position:
               
49-285
               

               
Cow position:
               
chr1:30033536-30033766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
49-285
               

               
Cow position:
               
chr1:31342146-31341908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 38
               

               
Conread position:
               
49-285
               

               
Cow position:
               
chr1:38279487-38279237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 175
               

               
Conread position:
               
49-285
               

               
Cow position:
               
chr1:51444496-51444744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
98, 159
               

               
Conread position:
               
49-285
               

               
Cow position:
               
chr1:55145298-55145545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
100, 158
               

               
Conread position:
               
49-285
               

               
Cow position:
               
chr1:70535210-70534964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 157
               

               
Conread position:
               
49-287
               

               
Cow position:
               
chr1:29656439-29656690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 174
               

               
Conread position:
               
49-287
               

               
Cow position:
               
chr1:33987572-33987321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
52, 65
               

               
Conread position:
               
49-287
               

               
Cow position:
               
chr1:70037988-70037744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
113, 153
               

               
Conread position:
               
49-317
               

               
Cow position:
               
chr1:39480231-39479961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
49-317
               

               
Cow position:
               
chr1:96193884-96193628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
222, 33
               

               
Conread position:
               
49-332
               

               
Cow position:
               
chr1:34684739-34685056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
49-357
               

               
Cow position:
               
chr1:99572313-99571989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
49-358
               

               
Cow position:
               
chr1:70051492-70051807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-378
               

               
Cow position:
               
chr1:44127586-44127246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 10
               

               
Conread position:
               
49-379
               

               
Cow position:
               
chr1:24922271-24921910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
52, 185
               

               
Conread position:
               
49-390
               

               
Cow position:
               
chr1:37324015-37323663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 11
               

               
Conread position:
               
49-395
               

               
Cow position:
               
chr1:102431486-102431119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 56
               

               
Conread position:
               
49-398
               

               
Cow position:
               
chr1:43568257-43567911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
49-399
               

               
Cow position:
               
chr1:60251173-60250798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-400
               

               
Cow position:
               
chr1:63239947-63240320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
49-405
               

               
Cow position:
               
chr1:31392041-31391667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
49-407
               

               
Cow position:
               
chr1:53396958-53397311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
49-407
               

               
Cow position:
               
chr1:56746137-56746520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
101, 160
               

               
Conread position:
               
49-407
               

               
Cow position:
               
chr1:61203637-61204020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
49-407
               

               
Cow position:
               
chr1:67913337-67913714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
49-407
               

               
Cow position:
               
chr1:72139445-72139827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 173
               

               
Conread position:
               
49-407
               

               
Cow position:
               
chr1:73064082-73063706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
38, 156
               

               
Conread position:
               
49-407
               

               
Cow position:
               
chr1:86506088-86505717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 26
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr1:26722409-26722026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-409
               

               
Cow position:
               
chr1:58528525-58528908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
118, 56
               

               
Conread position:
               
49-414
               

               
Cow position:
               
chr1:77166092-77166471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
49-419
               

               
Cow position:
               
chr1:52371225-52371620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-420
               

               
Cow position:
               
chr1:34362902-34363287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
49-421
               

               
Cow position:
               
chr1:19145916-19145511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
49-421
               

               
Cow position:
               
chr1:73967765-73968162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-422
               

               
Cow position:
               
chr1:7405924-7406322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-422
               

               
Cow position:
               
chr1:12468537-12468148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
52, 31
               

               
Conread position:
               
49-422
               

               
Cow position:
               
chr1:79453507-79453112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-423
               

               
Cow position:
               
chr1:32961250-32960847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-439
               

               
Cow position:
               
chr1:57506044-57506459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-446
               

               
Cow position:
               
chr1:13718584-13718164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 52
               

               
Conread position:
               
49-449
               

               
Cow position:
               
chr1:21114168-21113751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
102, 16
               

               
Conread position:
               
49-450
               

               
Cow position:
               
chr1:101833650-101834062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
49-451
               

               
Cow position:
               
chr1:5163088-5162665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 170
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr1:53649905-53650323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 158
               

               
Conread position:
               
49-459
               

               
Cow position:
               
chr1:42875403-42874977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 153
               

               
Conread position:
               
49-460
               

               
Cow position:
               
chr1:99916692-99917128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-461
               

               
Cow position:
               
chr1:93112094-93111675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 172
               

               
Conread position:
               
49-469
               

               
Cow position:
               
chr1:68846457-68846027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 155
               

               
Conread position:
               
49-469
               

               
Cow position:
               
chr1:76618221-76617782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
48, 158
               

               
Conread position:
               
49-472
               

               
Cow position:
               
chr1:61748197-61747758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 72
               

               
Conread position:
               
49-475
               

               
Cow position:
               
chr1:61342453-61342008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
49-475
               

               
Cow position:
               
chr1:71135156-71135593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
49-480
               

               
Cow position:
               
chr1:23861456-23861000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-483
               

               
Cow position:
               
chr1:21453632-21453197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
49-483
               

               
Cow position:
               
chr1:22789654-22790107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 172
               

               
Conread position:
               
49-484
               

               
Cow position:
               
chr1:9595692-9595232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 170
               

               
Conread position:
               
49-484
               

               
Cow position:
               
chr1:10033791-10034240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-484
               

               
Cow position:
               
chr1:32912762-32913209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
49-484
               

               
Cow position:
               
chr1:34858421-34857989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 10
               

               
Conread position:
               
49-484
               

               
Cow position:
               
chr1:82909578-82909120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
49-485
               

               
Cow position:
               
chr1:22481407-22480951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 161
               

               
Conread position:
               
49-490
               

               
Cow position:
               
chr1:54116501-54116957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
49-490
               

               
Cow position:
               
chr1:64717639-64717175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 158
               

               
Conread position:
               
49-492
               

               
Cow position:
               
chr1:99628805-99628362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
49-493
               

               
Cow position:
               
chr1:57120578-57120112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
49-495
               

               
Cow position:
               
chr1:22730316-22729865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
49-495
               

               
Cow position:
               
chr1:52054073-52054548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 158
               

               
Conread position:
               
49-497
               

               
Cow position:
               
chr1:4375531-4375078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 149
               

               
Conread position:
               
49-497
               

               
Cow position:
               
chr1:77656798-77657261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
49-498
               

               
Cow position:
               
chr1:99675083-99674609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-499
               

               
Cow position:
               
chr1:69671368-69670894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
49-501
               

               
Cow position:
               
chr1:76860767-76860300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
49-501
               

               
Cow position:
               
chr1:77924734-77925211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-501
               

               
Cow position:
               
chr1:85773461-85773934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
49-501
               

               
Cow position:
               
chr1:100420851-100421314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 160
               

               
Conread position:
               
49-502
               

               
Cow position:
               
chr1:8828274-8828751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 125
               

               
Conread position:
               
49-502
               

               
Cow position:
               
chr1:13405132-13404654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
49-502
               

               
Cow position:
               
chr1:31646371-31645898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-502
               

               
Cow position:
               
chr1:39111969-39112436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
49-502
               

               
Cow position:
               
chr1:98656700-98656240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
49-503
               

               
Cow position:
               
chr1:20543480-20543954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 159
               

               
Conread position:
               
49-503
               

               
Cow position:
               
chr1:46694654-46694185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:3339919-3340394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 162
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:3931087-3930607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:19483990-19483520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 154
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:24440806-24440328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:26446407-26446874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:33854520-33854999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:58218358-58218830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:58340175-58340647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:61746915-61746448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:66971906-66971439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:69770072-69770548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 158
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:72766783-72766303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 158
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:78921760-78921276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:81308614-81309094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:84446932-84447414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 162
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:85807361-85806899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:88328227-88327750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:91105295-91105771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:91902272-91902752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-504
               

               
Cow position:
               
chr1:102783792-102784256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 10
               

               
Conread position:
               
49-506
               

               
Cow position:
               
chr1:64945891-64945418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
49-507
               

               
Cow position:
               
chr1:3263242-3263722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-507
               

               
Cow position:
               
chr1:18698683-18699166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 171
               

               
Conread position:
               
49-507
               

               
Cow position:
               
chr1:38711965-38712449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 156
               

               
Conread position:
               
49-507
               

               
Cow position:
               
chr1:71559491-71559014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 153
               

               
Conread position:
               
49-507
               

               
Cow position:
               
chr1:79553749-79554230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
49-507
               

               
Cow position:
               
chr1:94662906-94663389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:2744364-2744835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 23
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:2989736-2990220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:3970011-3969549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:6165237-6165714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:6197023-6196543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:7162555-7162082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:7324324-7324774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:8517817-8517333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:8602723-8602240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:11666288-11665804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:12375051-12374567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:13438374-13438832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 157
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:15149390-15148907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:16797843-16797367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:16819865-16820343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:17248410-17247926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:18195848-18196332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:18962478-18962012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:19158204-19157720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:19236244-19235760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:20527413-20527897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:20832135-20832618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:20846760-20846276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:21258346-21257873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:21377305-21376826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:21576795-21577289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 169
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:22629580-22629155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:24781227-24780746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 157
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:26536933-26536449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:26588203-26588685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:28677311-28677782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 34
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:28714292-28714772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:28811989-28811505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:29428852-29429341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:30372158-30372628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:30531767-30531296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 155
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:31351513-31351034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:33548148-33547663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 56
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:33899798-33900276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:34533494-34533978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:35598557-35598074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:39235250-39234770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 158
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:40058358-40058830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:40088629-40089103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:42056852-42057321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:47078927-47078445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:49268137-49268617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:51980238-51980704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 153
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:52355419-52354937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:52434278-52434759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 172
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:52755280-52754798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:54472161-54471677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:54933181-54933664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:55044009-55043527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 139
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:55159130-55158645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:55273789-55273307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:55780124-55780605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:56141100-56140659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 155
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:56170213-56170695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 158
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:56205557-56205077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:56425166-56425649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 168
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:56666353-56666837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:57571084-57571569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 161
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:58192552-58192069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:58418929-58419399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:59483610-59483130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:61331710-61331226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:61563290-61563784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 154
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:63341219-63340736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:64942283-64941811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 394
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:66490834-66491314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 56
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:67006131-67006611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:67078571-67078090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:68145718-68145234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:68602377-68601893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:69504121-69503637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:70064368-70064834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 33
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:71690809-71691290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:72086852-72087321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:72307068-72306621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:72986711-72987192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:73463219-73463703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:73565225-73564741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:73762292-73761814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 158
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:75403147-75403631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:76749135-76748658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:76873135-76873614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:76878285-76878767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 131
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:77554745-77554266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 154
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:77747996-77748479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:78587205-78586721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:79255248-79255720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:80564824-80564340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:82479236-82479720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:82864070-82864534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
43, 122
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:82879687-82880161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 136
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:83169695-83170179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:85777206-85776725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 57
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:85795200-85795684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 158
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:86496542-86497026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:86544884-86544406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:89090284-89089800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:89186205-89185728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:89234779-89234296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 58
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:89431656-89432140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:89492977-89492504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 59
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:90393502-90393022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 34
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:91673485-91673968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:93857775-93858249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:95456605-95457088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 159
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:98354142-98353658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 171
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:98617925-98618399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 152
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:99117268-99117747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 162
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:100591519-100591037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:102321862-102321388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 34
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:102552270-102552720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 48
               

               
Conread position:
               
49-508
               

               
Cow position:
               
chr1:102814726-102815210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
49-511
               

               
Cow position:
               
chr1:20378343-20377867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 160
               

               
Conread position:
               
49-513
               

               
Cow position:
               
chr1:88563661-88563176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
102, 171
               

               
Conread position:
               
50-247
               

               
Cow position:
               
chr1:12872201-12871996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
51, 56
               

               
Conread position:
               
50-256
               

               
Cow position:
               
chr1:68818655-68818441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
103, 157
               

               
Conread position:
               
50-407
               

               
Cow position:
               
chr1:30079195-30079576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
103, 158
               

               
Conread position:
               
50-407
               

               
Cow position:
               
chr1:42739950-42740332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
101, 158
               

               
Conread position:
               
50-426
               

               
Cow position:
               
chr1:100451415-100451024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
50-429
               

               
Cow position:
               
chr1:57946197-57946590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 53
               

               
Conread position:
               
50-430
               

               
Cow position:
               
chr1:14561959-14561551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
47, 156
               

               
Conread position:
               
50-430
               

               
Cow position:
               
chr1:40483036-40482659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
50-435
               

               
Cow position:
               
chr1:24655084-24655493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 158
               

               
Conread position:
               
50-443
               

               
Cow position:
               
chr1:68950661-68951071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 142
               

               
Conread position:
               
50-461
               

               
Cow position:
               
chr1:91449537-91449951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
50-497
               

               
Cow position:
               
chr1:18282231-18282699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
16, 51
               

               
Conread position:
               
50-499
               

               
Cow position:
               
chr1:24580660-24581111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 169
               

               
Conread position:
               
50-507
               

               
Cow position:
               
chr1:50764412-50764868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
50-507
               

               
Cow position:
               
chr1:53309403-53308923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:7712034-7712510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 158
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:14240813-14240330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 47
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:20001740-20001272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:23098891-23099363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:27309822-27309355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:31535106-31535588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 158
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:40681477-40680993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 170
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:53519918-53520383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:57659866-57660335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:57759169-57759646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:71794787-71795269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 158
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:72590110-72589627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 158
               

               
Conread position:
               
50-508
               

               
Cow position:
               
chr1:80667469-80667917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
51-249
               

               
Cow position:
               
chr1:54295887-54295686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 55
               

               
Conread position:
               
51-269
               

               
Cow position:
               
chr1:49132918-49132691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 158
               

               
Conread position:
               
51-286
               

               
Cow position:
               
chr1:72864205-72864446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
51-331
               

               
Cow position:
               
chr1:43449257-43448951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
51, 170
               

               
Conread position:
               
51-358
               

               
Cow position:
               
chr1:92279551-92279237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
51-407
               

               
Cow position:
               
chr1:56631635-56632006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 72
               

               
Conread position:
               
51-460
               

               
Cow position:
               
chr1:63044902-63044472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
60, 46
               

               
Conread position:
               
51-484
               

               
Cow position:
               
chr1:45006229-45006653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 84
               

               
Conread position:
               
51-492
               

               
Cow position:
               
chr1:67013282-67013717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
51-498
               

               
Cow position:
               
chr1:61096755-61097227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 157
               

               
Conread position:
               
51-499
               

               
Cow position:
               
chr1:22226898-22227330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
205, 46
               

               
Conread position:
               
51-502
               

               
Cow position:
               
chr1:14529203-14528737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
51-502
               

               
Cow position:
               
chr1:22253330-22253791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 8
               

               
Conread position:
               
51-504
               

               
Cow position:
               
chr1:46613042-46612564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 157
               

               
Conread position:
               
51-508
               

               
Cow position:
               
chr1:5013543-5013061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 170
               

               
Conread position:
               
51-508
               

               
Cow position:
               
chr1:16573662-16573207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
82, 46
               

               
Conread position:
               
51-508
               

               
Cow position:
               
chr1:17187985-17187503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 157
               

               
Conread position:
               
51-508
               

               
Cow position:
               
chr1:26811817-26811338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
51-508
               

               
Cow position:
               
chr1:61220687-61221155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
51-508
               

               
Cow position:
               
chr1:82369675-82370144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
111, 32
               

               
Conread position:
               
51-508
               

               
Cow position:
               
chr1:85142968-85142478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
51-508
               

               
Cow position:
               
chr1:88530719-88530256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
51-508
               

               
Cow position:
               
chr1:98989161-98988690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 29
               

               
Conread position:
               
52-285
               

               
Cow position:
               
chr1:100536404-100536648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
101, 167
               

               
Conread position:
               
52-422
               

               
Cow position:
               
chr1:29461586-29461977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
52-475
               

               
Cow position:
               
chr1:39141293-39140848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
52-483
               

               
Cow position:
               
chr1:21353061-21352614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
98, 155
               

               
Conread position:
               
52-506
               

               
Cow position:
               
chr1:57397058-57396607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
76, 151
               

               
Conread position:
               
53-287
               

               
Cow position:
               
chr1:21678057-21678293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
196, 144
               

               
Conread position:
               
53-445
               

               
Cow position:
               
chr1:46820872-46821286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
53-508
               

               
Cow position:
               
chr1:8470905-8470426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 155
               

               
Conread position:
               
53-508
               

               
Cow position:
               
chr1:11854687-11854214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
54-508
               

               
Cow position:
               
chr1:83136200-83136671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 43
               

               
Conread position:
               
56-485
               

               
Cow position:
               
chr1:52864027-52863579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
41, 161
               

               
Conread position:
               
57-508
               

               
Cow position:
               
chr1:82567678-82568145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
58-475
               

               
Cow position:
               
chr1:71044769-71045208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 144
               

               
Conread position:
               
59-269
               

               
Cow position:
               
chr1:22909132-22909347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
77, 158
               

               
Conread position:
               
59-285
               

               
Cow position:
               
chr1:54477056-54477284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
61-460
               

               
Cow position:
               
chr1:13579512-13579091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 121
               

               
Conread position:
               
61-508
               

               
Cow position:
               
chr1:68281814-68282274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 146
               

               
Conread position:
               
64-439
               

               
Cow position:
               
chr1:38400906-38401271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
65-287
               

               
Cow position:
               
chr1:37542038-37541808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 151
               

               
Conread position:
               
65-508
               

               
Cow position:
               
chr1:51967518-51967979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 143
               

               
Conread position:
               
65-508
               

               
Cow position:
               
chr1:85338142-85338595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 14
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr1:90622946-90622580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
75-504
               

               
Cow position:
               
chr1:44079139-44078690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
82-507
               

               
Cow position:
               
chr1:33392304-33392751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 125
               

               
Conread position:
               
83-348
               

               
Cow position:
               
chr1:70388040-70387752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 23
               

               
Conread position:
               
84-508
               

               
Cow position:
               
chr1:42054277-42053847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
86-508
               

               
Cow position:
               
chr1:42554295-42554732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 121
               

               
Conread position:
               
99-486
               

               
Cow position:
               
chr1:95766063-95765671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
105-358
               

               
Cow position:
               
chr1:99106108-99105846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 103
               

               
Conread position:
               
107-358
               

               
Cow position:
               
chr1:56475311-56475582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
107-407
               

               
Cow position:
               
chr1:9438980-9438665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
107-502
               

               
Cow position:
               
chr1:61722271-61721892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
118-502
               

               
Cow position:
               
chr1:68854277-68854663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
26, 90
               

               
Conread position:
               
119-508
               

               
Cow position:
               
chr1:99838018-99837610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 79
               

               
Conread position:
               
120-458
               

               
Cow position:
               
chr1:69247293-69247640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 95
               

               
Conread position:
               
123-404
               

               
Cow position:
               
chr1:98797830-98797536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
123-421
               

               
Cow position:
               
chr1:6765770-6765452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
124-450
               

               
Cow position:
               
chr1:59014057-59013718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
125-508
               

               
Cow position:
               
chr1:70381083-70380676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 92
               

               
Conread position:
               
125-508
               

               
Cow position:
               
chr1:80902139-80901758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
126-496
               

               
Cow position:
               
chr1:28251708-28252096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
126-502
               

               
Cow position:
               
chr1:50273520-50273140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
27, 76
               

               
Conread position:
               
127-403
               

               
Cow position:
               
chr1:29915511-29915798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
127-419
               

               
Cow position:
               
chr1:21507747-21507444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
136, 71
               

               
Conread position:
               
127-449
               

               
Cow position:
               
chr1:23578469-23578139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
127-449
               

               
Cow position:
               
chr1:79296144-79296481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
127-502
               

               
Cow position:
               
chr1:30494905-30495285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 71
               

               
Conread position:
               
127-503
               

               
Cow position:
               
chr1:101008517-101008129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
46, 74
               

               
Conread position:
               
127-508
               

               
Cow position:
               
chr1:12057908-12057517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 71
               

               
Conread position:
               
127-508
               

               
Cow position:
               
chr1:57246433-57246839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 129
               

               
Conread position:
               
127-508
               

               
Cow position:
               
chr1:72997308-72997705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
128-348
               

               
Cow position:
               
chr1:55019010-55019240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 70
               

               
Conread position:
               
128-508
               

               
Cow position:
               
chr1:66242719-66242329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 70
               

               
Conread position:
               
129-383
               

               
Cow position:
               
chr1:69287068-69286799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
133, 8
               

               
Conread position:
               
129-500
               

               
Cow position:
               
chr1:55220171-55219789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
129-508
               

               
Cow position:
               
chr1:4337105-4337494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 73
               

               
Conread position:
               
129-508
               

               
Cow position:
               
chr1:57679039-57678646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
129-508
               

               
Cow position:
               
chr1:73443515-73443147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
129-508
               

               
Cow position:
               
chr1:82920800-82920404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 70
               

               
Conread position:
               
129-508
               

               
Cow position:
               
chr1:89484436-89484836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 50
               

               
Conread position:
               
130-421
               

               
Cow position:
               
chr1:8844999-8845306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
130-449
               

               
Cow position:
               
chr1:39250095-39249761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
130-492
               

               
Cow position:
               
chr1:60308233-60308599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
130-508
               

               
Cow position:
               
chr1:44083049-44083420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
139, 68
               

               
Conread position:
               
130-508
               

               
Cow position:
               
chr1:66654547-66654927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
130, 37
               

               
Conread position:
               
130-508
               

               
Cow position:
               
chr1:92523027-92522631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
131-395
               

               
Cow position:
               
chr1:88389667-88389921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
131-423
               

               
Cow position:
               
chr1:54390780-54390481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 68
               

               
Conread position:
               
131-449
               

               
Cow position:
               
chr1:25119933-25119612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
13, 68
               

               
Conread position:
               
131-450
               

               
Cow position:
               
chr1:4277002-4277327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
131-463
               

               
Cow position:
               
chr1:20867264-20866919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
13, 67
               

               
Conread position:
               
131-463
               

               
Cow position:
               
chr1:59248423-59248090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
131-463
               

               
Cow position:
               
chr1:64901023-64901354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
131, 16
               

               
Conread position:
               
131-472
               

               
Cow position:
               
chr1:51313436-51313089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr1:53487821-53488179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 68
               

               
Conread position:
               
131-502
               

               
Cow position:
               
chr1:54163742-54163371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
131-502
               

               
Cow position:
               
chr1:87830594-87830972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
131-508
               

               
Cow position:
               
chr1:72804170-72803779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
131-508
               

               
Cow position:
               
chr1:86363832-86364198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
132-317
               

               
Cow position:
               
chr1:22727647-22727831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
122, 66
               

               
Conread position:
               
132-407
               

               
Cow position:
               
chr1:101974062-101973775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 63
               

               
Conread position:
               
132-423
               

               
Cow position:
               
chr1:40061568-40061860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 78
               

               
Conread position:
               
132-423
               

               
Cow position:
               
chr1:76304293-76304003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 63
               

               
Conread position:
               
132-442
               

               
Cow position:
               
chr1:25053241-25052918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
131, 66
               

               
Conread position:
               
132-459
               

               
Cow position:
               
chr1:98789200-98789530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
136, 66
               

               
Conread position:
               
132-475
               

               
Cow position:
               
chr1:71792275-71792633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 67
               

               
Conread position:
               
132-475
               

               
Cow position:
               
chr1:99865263-99865621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
132-484
               

               
Cow position:
               
chr1:31352281-31351926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
132-501
               

               
Cow position:
               
chr1:81320979-81320597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
132-502
               

               
Cow position:
               
chr1:22012615-22012234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 66
               

               
Conread position:
               
132-502
               

               
Cow position:
               
chr1:86705484-86705868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 38
               

               
Conread position:
               
132-504
               

               
Cow position:
               
chr1:29037886-29038273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 66
               

               
Conread position:
               
132-504
               

               
Cow position:
               
chr1:51883955-51884334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 66
               

               
Conread position:
               
132-504
               

               
Cow position:
               
chr1:67289965-67290345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
132-505
               

               
Cow position:
               
chr1:71081497-71081115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 80
               

               
Conread position:
               
132-507
               

               
Cow position:
               
chr1:25553150-25553538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
132-507
               

               
Cow position:
               
chr1:28176098-28176489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 82
               

               
Conread position:
               
132-507
               

               
Cow position:
               
chr1:57635957-57636348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
132-507
               

               
Cow position:
               
chr1:61282769-61283155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
132-507
               

               
Cow position:
               
chr1:72812506-72812891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
132-507
               

               
Cow position:
               
chr1:89263267-89262873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
118, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:4452739-4452350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 77
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:4515378-4514999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 67
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:4646188-4645821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 67
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:5505284-5505675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:11874296-11873909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 74
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:16117053-16116662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:17938406-17938016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:19441194-19440809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:26838301-26838678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 67
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:28876443-28876832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:32563189-32562802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:38418168-38418551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 26
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:40964800-40964430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:47454634-47454245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:55327891-55327508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:56619599-56619209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:62507896-62507508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 78
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:65389903-65390298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:72114486-72114872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 67
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:78290903-78291294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:82091240-82091631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 78
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:86599667-86599274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:86993156-86993544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:88179205-88179595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:88676812-88677205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 93
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:94464461-94464848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:98559259-98559649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 77
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr1:100888162-100887774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 66
               

               
Conread position:
               
132-511
               

               
Cow position:
               
chr1:57574241-57573857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 62
               

               
Conread position:
               
135-462
               

               
Cow position:
               
chr1:26053780-26053450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
46, 76
               

               
Conread position:
               
135-508
               

               
Cow position:
               
chr1:41736526-41736137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
127, 81
               

               
Conread position:
               
135-508
               

               
Cow position:
               
chr1:52539896-52539508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
136-484
               

               
Cow position:
               
chr1:81665143-81664798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
125, 62
               

               
Conread position:
               
136-508
               

               
Cow position:
               
chr1:88337796-88338167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
137-285
               

               
Cow position:
               
chr1:61662186-61662038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
137-403
               

               
Cow position:
               
chr1:76851923-76851652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
137-415
               

               
Cow position:
               
chr1:64583434-64583700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
178, 29
               

               
Conread position:
               
137-438
               

               
Cow position:
               
chr1:4208148-4207832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
137-439
               

               
Cow position:
               
chr1:56439080-56438762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
137-452
               

               
Cow position:
               
chr1:34392510-34392179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 74
               

               
Conread position:
               
137-460
               

               
Cow position:
               
chr1:73434153-73433809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
137-475
               

               
Cow position:
               
chr1:71667129-71666770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 198
               

               
Conread position:
               
137-500
               

               
Cow position:
               
chr1:101787589-101787227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
137-501
               

               
Cow position:
               
chr1:68252680-68253059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chr1:18024467-18024089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chr1:30786175-30785812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
137-503
               

               
Cow position:
               
chr1:13638549-13638191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 73
               

               
Conread position:
               
137-504
               

               
Cow position:
               
chr1:24562403-24562021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 41
               

               
Conread position:
               
137-504
               

               
Cow position:
               
chr1:95474551-95474177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
137-507
               

               
Cow position:
               
chr1:25088319-25087945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
137-507
               

               
Cow position:
               
chr1:31515763-31515407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:3440314-3440699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 51
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:3932289-3931903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 73
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:7415836-7416215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:9261847-9262233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:9377020-9376642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
130, 43
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:16973761-16973377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:17033244-17032860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:19056224-19056605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:20098452-20098823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 62
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:20849180-20848794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:21080089-21079703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:23117857-23117473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:30281473-30281089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:31964724-31964361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
228, 58
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:38545365-38544979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:52380795-52381181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 73
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:57362982-57362596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:63046236-63046618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:66369042-66368656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 73
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:70069060-70068674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:70864598-70864980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:74513792-74513406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 73
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:79633201-79632818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:83060290-83059905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 36
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:84448976-84449362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
137-508
               

               
Cow position:
               
chr1:84893913-84894299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
138-407
               

               
Cow position:
               
chr1:22288352-22288616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
174, 72
               

               
Conread position:
               
138-460
               

               
Cow position:
               
chr1:53371718-53372053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 194
               

               
Conread position:
               
138-485
               

               
Cow position:
               
chr1:10005637-10005282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 60
               

               
Conread position:
               
138-501
               

               
Cow position:
               
chr1:29901875-29901525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 60
               

               
Conread position:
               
138-508
               

               
Cow position:
               
chr1:30883305-30882924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 60
               

               
Conread position:
               
138-508
               

               
Cow position:
               
chr1:52508269-52507885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 59
               

               
Conread position:
               
138-508
               

               
Cow position:
               
chr1:53578408-53578789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 60
               

               
Conread position:
               
138-508
               

               
Cow position:
               
chr1:67831784-67831397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 60
               

               
Conread position:
               
138-508
               

               
Cow position:
               
chr1:72624200-72624587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
103, 60
               

               
Conread position:
               
139-502
               

               
Cow position:
               
chr1:53647661-53648009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
140-508
               

               
Cow position:
               
chr1:21421306-21420921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
140-508
               

               
Cow position:
               
chr1:72807933-72808316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 58
               

               
Conread position:
               
141-506
               

               
Cow position:
               
chr1:31238833-31238449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 11
               

               
Conread position:
               
143-322
               

               
Cow position:
               
chr1:78796716-78796524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 66
               

               
Conread position:
               
143-445
               

               
Cow position:
               
chr1:33189473-33189780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 18
               

               
Conread position:
               
143-445
               

               
Cow position:
               
chr1:61591663-61591364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
121, 47
               

               
Conread position:
               
143-507
               

               
Cow position:
               
chr1:63048935-63049301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr1:15743177-15743554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr1:16838674-16839054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
68, 52
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr1:32361039-32360669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr1:36646094-36645715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr1:48345527-48345905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 55
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr1:56191062-56190682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 67
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr1:69406515-69406895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 55
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr1:79334630-79334249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
143-508
               

               
Cow position:
               
chr1:90913186-90913565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
147-496
               

               
Cow position:
               
chr1:76700383-76700016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
113, 47
               

               
Conread position:
               
147-508
               

               
Cow position:
               
chr1:17436040-17435665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 51
               

               
Conread position:
               
150-508
               

               
Cow position:
               
chr1:18224765-18224403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
151-500
               

               
Cow position:
               
chr1:38478976-38479336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
152-508
               

               
Cow position:
               
chr1:85838216-85838570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
114, 46
               

               
Conread position:
               
156-445
               

               
Cow position:
               
chr1:76555337-76555044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
115, 43
               

               
Conread position:
               
158-430
               

               
Cow position:
               
chr1:92881481-92881188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
158-463
               

               
Cow position:
               
chr1:39889450-39889768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
158-504
               

               
Cow position:
               
chr1:77461510-77461863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 27
               

               
Conread position:
               
158-508
               

               
Cow position:
               
chr1:81362653-81363010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 12
               

               
Conread position:
               
159-508
               

               
Cow position:
               
chr1:7630321-7630675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
159-508
               

               
Cow position:
               
chr1:22515658-22516018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
103, 39
               

               
Conread position:
               
161-461
               

               
Cow position:
               
chr1:55517432-55517122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
162-502
               

               
Cow position:
               
chr1:37435639-37435287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
163-409
               

               
Cow position:
               
chr1:74939109-74939361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
100, 53
               

               
Conread position:
               
163-475
               

               
Cow position:
               
chr1:2465544-2465228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 33
               

               
Conread position:
               
163-504
               

               
Cow position:
               
chr1:97076124-97075770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
163-508
               

               
Cow position:
               
chr1:12465637-12465293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
163-508
               

               
Cow position:
               
chr1:47923483-47923131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
163-508
               

               
Cow position:
               
chr1:67189052-67188688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
103, 47
               

               
Conread position:
               
164-507
               

               
Cow position:
               
chr1:88028200-88028548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
166-508
               

               
Cow position:
               
chr1:1027754-1028104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
100, 32
               

               
Conread position:
               
167-461
               

               
Cow position:
               
chr1:48036429-48036120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
167-496
               

               
Cow position:
               
chr1:74302731-74302392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
167-502
               

               
Cow position:
               
chr1:64972800-64973136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
167-504
               

               
Cow position:
               
chr1:35785156-35785511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 31
               

               
Conread position:
               
167-508
               

               
Cow position:
               
chr1:30311810-30312164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 43
               

               
Conread position:
               
167-508
               

               
Cow position:
               
chr1:58195707-58195364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
96, 31
               

               
Conread position:
               
167-508
               

               
Cow position:
               
chr1:71124258-71123902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 31
               

               
Conread position:
               
168-508
               

               
Cow position:
               
chr1:96298892-96298542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
170-507
               

               
Cow position:
               
chr1:92433174-92433502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
170-508
               

               
Cow position:
               
chr1:42821358-42821704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
94, 10
               

               
Conread position:
               
170-508
               

               
Cow position:
               
chr1:44837134-44836780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
170-508
               

               
Cow position:
               
chr1:52941389-52941742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
172-407
               

               
Cow position:
               
chr1:15049195-15049435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
172-421
               

               
Cow position:
               
chr1:69872858-69873122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
172-469
               

               
Cow position:
               
chr1:12899437-12899130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 36
               

               
Conread position:
               
172-476
               

               
Cow position:
               
chr1:81925790-81925481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
97, 26
               

               
Conread position:
               
173-475
               

               
Cow position:
               
chr1:102290466-102290149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
173-508
               

               
Cow position:
               
chr1:427903-427597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
174-443
               

               
Cow position:
               
chr1:40292748-40292479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
175-507
               

               
Cow position:
               
chr1:77619675-77620021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
176-369
               

               
Cow position:
               
chr1:48731657-48731473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
86, 22
               

               
Conread position:
               
177-508
               

               
Cow position:
               
chr1:69963914-69963573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 21
               

               
Conread position:
               
178-508
               

               
Cow position:
               
chr1:27494633-27494974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
180-407
               

               
Cow position:
               
chr1:100435704-100435943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 42
               

               
Conread position:
               
182-508
               

               
Cow position:
               
chr1:8745101-8744760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
183-508
               

               
Cow position:
               
chr1:9308887-9309227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
184-508
               

               
Cow position:
               
chr1:58172294-58172626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
103, 14
               

               
Conread position:
               
185-460
               

               
Cow position:
               
chr1:21132460-21132175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
19, 155
               

               
Conread position:
               
185-508
               

               
Cow position:
               
chr1:51393570-51393905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
185-508
               

               
Cow position:
               
chr1:88297619-88297946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
186-412
               

               
Cow position:
               
chr1:58779807-58780038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
84, 12
               

               
Conread position:
               
186-483
               

               
Cow position:
               
chr1:33364411-33364723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
186-483
               

               
Cow position:
               
chr1:33656244-33656556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
187-423
               

               
Cow position:
               
chr1:85163916-85163663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
190-508
               

               
Cow position:
               
chr1:68275582-68275900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
71, 98
               

               
Conread position:
               
191-508
               

               
Cow position:
               
chr1:95655531-95655212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
193-423
               

               
Cow position:
               
chr1:86574234-86574478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
195-429
               

               
Cow position:
               
chr1:25548441-25548690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
68, 135
               

               
Conread position:
               
199-421
               

               
Cow position:
               
chr1:39701913-39702150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 167
               

               
Conread position:
               
199-508
               

               
Cow position:
               
chr1:81356884-81356557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
200-425
               

               
Cow position:
               
chr1:3972022-3972255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
68, 78
               

               
Conread position:
               
200-472
               

               
Cow position:
               
chr1:25802029-25802306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
61, 184
               

               
Conread position:
               
200-502
               

               
Cow position:
               
chr1:44229626-44229946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
200-508
               

               
Cow position:
               
chr1:59018933-59019249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
201-450
               

               
Cow position:
               
chr1:20119588-20119846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
201-508
               

               
Cow position:
               
chr1:40603444-40603761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
202-504
               

               
Cow position:
               
chr1:24595005-24595323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
69, 16
               

               
Conread position:
               
202-507
               

               
Cow position:
               
chr1:68869382-68869689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
202-508
               

               
Cow position:
               
chr1:93413448-93413123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
51, 280
               

               
Conread position:
               
203-507
               

               
Cow position:
               
chr1:28413418-28413106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 133
               

               
Conread position:
               
203-508
               

               
Cow position:
               
chr1:23371146-23370827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
204-517
               

               
Cow position:
               
chr1:32306165-32305859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
209-464
               

               
Cow position:
               
chr1:52818207-52818480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
210-413
               

               
Cow position:
               
chr1:4563864-4563644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
210-461
               

               
Cow position:
               
chr1:3012394-3012128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
210-463
               

               
Cow position:
               
chr1:10936705-10936975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
210-482
               

               
Cow position:
               
chr1:60554914-60554624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
52, 233
               

               
Conread position:
               
210-508
               

               
Cow position:
               
chr1:33040240-33040555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
210-508
               

               
Cow position:
               
chr1:52038743-52039054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 242
               

               
Conread position:
               
210-508
               

               
Cow position:
               
chr1:72036020-72035713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
52, 143
               

               
Conread position:
               
210-508
               

               
Cow position:
               
chr1:72806585-72806281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
57, 169
               

               
Conread position:
               
210-508
               

               
Cow position:
               
chr1:97205776-97206092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
211-475
               

               
Cow position:
               
chr1:13133909-13133636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
212-508
               

               
Cow position:
               
chr1:53494632-53494929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
214-508
               

               
Cow position:
               
chr1:68481261-68480951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
51, 277
               

               
Conread position:
               
215-508
               

               
Cow position:
               
chr1:40351282-40351592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
215-508
               

               
Cow position:
               
chr1:80974802-80974494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
47, 173
               

               
Conread position:
               
216-507
               

               
Cow position:
               
chr1:22616478-22616175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
221-501
               

               
Cow position:
               
chr1:43650477-43650174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
223-476
               

               
Cow position:
               
chr1:40310194-40310462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 144
               

               
Conread position:
               
223-502
               

               
Cow position:
               
chr1:40700299-40700587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
224-475
               

               
Cow position:
               
chr1:10068031-10067763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 227
               

               
Conread position:
               
227-508
               

               
Cow position:
               
chr1:16337657-16337369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
21, 188
               

               
Conread position:
               
230-419
               

               
Cow position:
               
chr1:78940821-78940620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
230-508
               

               
Cow position:
               
chr1:20146885-20147161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
233-427
               

               
Cow position:
               
chr1:101130593-101130392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
233-508
               

               
Cow position:
               
chr1:77761846-77762119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 29
               

               
Conread position:
               
236-445
               

               
Cow position:
               
chr1:60033466-60033246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
246-508
               

               
Cow position:
               
chr1:12871799-12871548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
249-508
               

               
Cow position:
               
chr1:7746420-7746675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
253-508
               

               
Cow position:
               
chr1:97311575-97311822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
257-504
               

               
Cow position:
               
chr1:24571651-24571406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
205, 89
               

               
Conread position:
               
258-475
               

               
Cow position:
               
chr1:67974700-67974474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
265-508
               

               
Cow position:
               
chr1:20522449-20522203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
18, 66
               

               
Conread position:
               
267-504
               

               
Cow position:
               
chr1:13451289-13451521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
268-472
               

               
Cow position:
               
chr1:56407828-56408030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
269-508
               

               
Cow position:
               
chr1:52775703-52775463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
269-508
               

               
Cow position:
               
chr1:97482405-97482166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
270-409
               

               
Cow position:
               
chr1:22727820-22727959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
271-501
               

               
Cow position:
               
chr1:23634662-23634430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
271-508
               

               
Cow position:
               
chr1:24910081-24909843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
14, 88
               

               
Conread position:
               
272-449
               

               
Cow position:
               
chr1:20078664-20078485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
272-475
               

               
Cow position:
               
chr1:19041873-19042076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
272-502
               

               
Cow position:
               
chr1:102313771-102313543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
20, 7
               

               
Conread position:
               
272-505
               

               
Cow position:
               
chr1:56718565-56718793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
272-508
               

               
Cow position:
               
chr1:54477305-54477538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
273-508
               

               
Cow position:
               
chr1:37555933-37556161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
274-458
               

               
Cow position:
               
chr1:40509744-40509559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
274-469
               

               
Cow position:
               
chr1:96193644-96193455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
274-490
               

               
Cow position:
               
chr1:21278612-21278394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 5
               

               
Conread position:
               
274-504
               

               
Cow position:
               
chr1:39479977-39479750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
277-443
               

               
Cow position:
               
chr1:9512865-9512703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
277-502
               

               
Cow position:
               
chr1:53368682-53368913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
277-507
               

               
Cow position:
               
chr1:102010772-102010542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
22, 149
               

               
Conread position:
               
280-472
               

               
Cow position:
               
chr1:80295739-80295932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
280-507
               

               
Cow position:
               
chr1:30033793-30034026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
40, 125
               

               
Conread position:
               
280-508
               

               
Cow position:
               
chr1:51444768-51444994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
280-508
               

               
Cow position:
               
chr1:65480462-65480689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
281-460
               

               
Cow position:
               
chr1:70534938-70534760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
281-505
               

               
Cow position:
               
chr1:53424441-53424661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
24, 148
               

               
Conread position:
               
281-506
               

               
Cow position:
               
chr1:85527677-85527452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
281-508
               

               
Cow position:
               
chr1:59626169-59626394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
281-508
               

               
Cow position:
               
chr1:76208511-76208286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 67
               

               
Conread position:
               
281-508
               

               
Cow position:
               
chr1:86451190-86450964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
190, 13
               

               
Conread position:
               
281-508
               

               
Cow position:
               
chr1:90605331-90605107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
216, 202
               

               
Conread position:
               
282-475
               

               
Cow position:
               
chr1:9411549-9411357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 113
               

               
Conread position:
               
282-508
               

               
Cow position:
               
chr1:38688699-38688938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
282-508
               

               
Cow position:
               
chr1:79843718-79843946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 58
               

               
Conread position:
               
283-497
               

               
Cow position:
               
chr1:79114134-79114340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
283-504
               

               
Cow position:
               
chr1:1349313-1349091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
283-508
               

               
Cow position:
               
chr1:67009476-67009255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
284-407
               

               
Cow position:
               
chr1:81302647-81302770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-443
               

               
Cow position:
               
chr1:21459628-21459780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
284-475
               

               
Cow position:
               
chr1:91052387-91052198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
284-482
               

               
Cow position:
               
chr1:72069573-72069375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-482
               

               
Cow position:
               
chr1:81363524-81363324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
111, 10
               

               
Conread position:
               
284-496
               

               
Cow position:
               
chr1:98619958-98620169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
203, 154
               

               
Conread position:
               
284-497
               

               
Cow position:
               
chr1:89840523-89840737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
284-498
               

               
Cow position:
               
chr1:19517925-19517706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
284-500
               

               
Cow position:
               
chr1:72285052-72284826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
284-504
               

               
Cow position:
               
chr1:97285119-97284901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
284-507
               

               
Cow position:
               
chr1:38687737-38687950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:6900659-6900883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:10071595-10071371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:15418323-15418099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:26585734-26585958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:37660994-37661216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:44991461-44991240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:48735447-48735671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:52378485-52378709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:57577388-57577164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:61006310-61006082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:61493312-61493536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:62530271-62530047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:67717820-67717596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:74086298-74086074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:76486294-76486070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:78235174-78234950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:78557940-78558164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:81779181-81779405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:86597065-86597288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
284-508
               

               
Cow position:
               
chr1:98535130-98535351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
165, 41
               

               
Conread position:
               
284-510
               

               
Cow position:
               
chr1:42174826-42175052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
285-431
               

               
Cow position:
               
chr1:18594589-18594735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
285-461
               

               
Cow position:
               
chr1:33442676-33442505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
285-463
               

               
Cow position:
               
chr1:51918175-51917997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
285-487
               

               
Cow position:
               
chr1:72462406-72462609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
285-496
               

               
Cow position:
               
chr1:78782450-78782660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
285-497
               

               
Cow position:
               
chr1:60280043-60280258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
285-504
               

               
Cow position:
               
chr1:40925787-40926004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
285-504
               

               
Cow position:
               
chr1:85152016-85152233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
285-508
               

               
Cow position:
               
chr1:46885343-46885567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
285-508
               

               
Cow position:
               
chr1:56720987-56720764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
285-508
               

               
Cow position:
               
chr1:76020427-76020203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 9
               

               
Conread position:
               
286-502
               

               
Cow position:
               
chr1:77867298-77867506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
286-508
               

               
Cow position:
               
chr1:9783747-9783969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
155, 121
               

               
Conread position:
               
287-423
               

               
Cow position:
               
chr1:61728478-61728348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
287-423
               

               
Cow position:
               
chr1:80967584-80967720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
287-451
               

               
Cow position:
               
chr1:60808959-60809124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
287-483
               

               
Cow position:
               
chr1:37420744-37420548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
185, 21
               

               
Conread position:
               
287-497
               

               
Cow position:
               
chr1:97622956-97622744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
287-508
               

               
Cow position:
               
chr1:94706347-94706122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 137
               

               
Conread position:
               
288-505
               

               
Cow position:
               
chr1:13777256-13777039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
89, 174
               

               
Conread position:
               
288-508
               

               
Cow position:
               
chr1:4619544-4619764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
288-508
               

               
Cow position:
               
chr1:13550405-13550186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
288-508
               

               
Cow position:
               
chr1:20798341-20798558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
288-508
               

               
Cow position:
               
chr1:26323495-26323274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
288-508
               

               
Cow position:
               
chr1:47791554-47791337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
288-508
               

               
Cow position:
               
chr1:86511420-86511639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
289-504
               

               
Cow position:
               
chr1:94879564-94879348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
290-492
               

               
Cow position:
               
chr1:31190842-31190638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
290-504
               

               
Cow position:
               
chr1:31708125-31708338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 197
               

               
Conread position:
               
290-508
               

               
Cow position:
               
chr1:12282883-12283094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
290-508
               

               
Cow position:
               
chr1:52979184-52979402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
290-508
               

               
Cow position:
               
chr1:57304827-57305046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
290-508
               

               
Cow position:
               
chr1:66871288-66871072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 174
               

               
Conread position:
               
290-508
               

               
Cow position:
               
chr1:67405898-67406119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
291-421
               

               
Cow position:
               
chr1:102476818-102476947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
28, 62
               

               
Conread position:
               
291-479
               

               
Cow position:
               
chr1:89742743-89742555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 154
               

               
Conread position:
               
291-502
               

               
Cow position:
               
chr1:88266540-88266329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
291-508
               

               
Cow position:
               
chr1:1040229-1040445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
291-508
               

               
Cow position:
               
chr1:30440698-30440911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
291-508
               

               
Cow position:
               
chr1:81859953-81859738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
292-405
               

               
Cow position:
               
chr1:12803814-12803927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
293-502
               

               
Cow position:
               
chr1:70934094-70933888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 86
               

               
Conread position:
               
293-508
               

               
Cow position:
               
chr1:100510087-100510311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
294-421
               

               
Cow position:
               
chr1:47635143-47635016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-439
               

               
Cow position:
               
chr1:24715430-24715575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-469
               

               
Cow position:
               
chr1:25178490-25178316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
294-500
               

               
Cow position:
               
chr1:4026454-4026663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
294-501
               

               
Cow position:
               
chr1:60342497-60342704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-503
               

               
Cow position:
               
chr1:21300273-21300481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
294-503
               

               
Cow position:
               
chr1:44137162-44136954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
147, 43
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:1383350-1383136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:43225466-43225252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:43972735-43972949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:52171318-52171108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:57096320-57096535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:57391086-57390883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
177, 19
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:61281533-61281747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:65943694-65943483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:72963572-72963358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:85578335-85578121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
294-508
               

               
Cow position:
               
chr1:86372516-86372301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
295-443
               

               
Cow position:
               
chr1:43381662-43381808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
295-460
               

               
Cow position:
               
chr1:21523301-21523463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
295-501
               

               
Cow position:
               
chr1:92009127-92009336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
295-504
               

               
Cow position:
               
chr1:53328526-53328311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
295-507
               

               
Cow position:
               
chr1:2055601-2055390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
296-414
               

               
Cow position:
               
chr1:22688329-22688445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
296-508
               

               
Cow position:
               
chr1:23040824-23041035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
298-437
               

               
Cow position:
               
chr1:100536685-100536823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
298-500
               

               
Cow position:
               
chr1:79279287-79279090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
298-508
               

               
Cow position:
               
chr1:7739256-7739462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
298-508
               

               
Cow position:
               
chr1:93962368-93962148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
299-428
               

               
Cow position:
               
chr1:20003326-20003197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
299-501
               

               
Cow position:
               
chr1:29656745-29656943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 134
               

               
Conread position:
               
299-508
               

               
Cow position:
               
chr1:39100305-39100515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
299-508
               

               
Cow position:
               
chr1:54295395-54295186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 120
               

               
Conread position:
               
299-508
               

               
Cow position:
               
chr1:88983875-88983666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
300-508
               

               
Cow position:
               
chr1:62597691-62597486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
302-504
               

               
Cow position:
               
chr1:64251796-64251596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
303-437
               

               
Cow position:
               
chr1:99491459-99491325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
303-452
               

               
Cow position:
               
chr1:44769827-44769678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
127, 122
               

               
Conread position:
               
304-508
               

               
Cow position:
               
chr1:44819272-44819068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
304-508
               

               
Cow position:
               
chr1:97535450-97535652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
305-479
               

               
Cow position:
               
chr1:39069968-39069803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
306-508
               

               
Cow position:
               
chr1:95593192-95592989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
307-508
               

               
Cow position:
               
chr1:60410501-60410700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
12, 182
               

               
Conread position:
               
307-508
               

               
Cow position:
               
chr1:62711654-62711453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
308-508
               

               
Cow position:
               
chr1:38278885-38278681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
308-508
               

               
Cow position:
               
chr1:40532040-40531842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
309-475
               

               
Cow position:
               
chr1:73702795-73702628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
309-501
               

               
Cow position:
               
chr1:82958760-82958571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
162, 9
               

               
Conread position:
               
312-504
               

               
Cow position:
               
chr1:12223371-12223185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
313-500
               

               
Cow position:
               
chr1:62531005-62531191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
313-500
               

               
Cow position:
               
chr1:89342695-89342509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
313-507
               

               
Cow position:
               
chr1:33987264-33987071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chr1:2764672-2764866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chr1:21994340-21994145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chr1:44557123-44556928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chr1:72104425-72104625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
132, 91
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chr1:85361141-85361330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
157, 125
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chr1:95018516-95018331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
313-508
               

               
Cow position:
               
chr1:95229868-95229670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
314-508
               

               
Cow position:
               
chr1:9526109-9526302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
314-508
               

               
Cow position:
               
chr1:13438835-13439029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
315-508
               

               
Cow position:
               
chr1:8345863-8345670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
315-508
               

               
Cow position:
               
chr1:28770360-28770167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
316-485
               

               
Cow position:
               
chr1:37541616-37541450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
316-508
               

               
Cow position:
               
chr1:11771009-11770824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
316-508
               

               
Cow position:
               
chr1:61726085-61725897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
317-480
               

               
Cow position:
               
chr1:36008113-36008276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
317-508
               

               
Cow position:
               
chr1:89793010-89792819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
318-493
               

               
Cow position:
               
chr1:22087894-22088070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
319-508
               

               
Cow position:
               
chr1:12035312-12035501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
320-508
               

               
Cow position:
               
chr1:75826072-75826260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
325-502
               

               
Cow position:
               
chr1:12608197-12608020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
325-508
               

               
Cow position:
               
chr1:2070534-2070351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
325-508
               

               
Cow position:
               
chr1:11199062-11198879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
326-508
               

               
Cow position:
               
chr1:84284258-84284440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
328-508
               

               
Cow position:
               
chr1:15333213-15333391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
53, 27
               

               
Conread position:
               
329-504
               

               
Cow position:
               
chr1:21092395-21092565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
330-508
               

               
Cow position:
               
chr1:24236218-24236040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
330-508
               

               
Cow position:
               
chr1:48600671-48600849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
330-508
               

               
Cow position:
               
chr1:53563998-53564176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
331-475
               

               
Cow position:
               
chr1:43448460-43448316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
331-508
               

               
Cow position:
               
chr1:3930559-3930383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
334-508
               

               
Cow position:
               
chr1:29128971-29129145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
335-502
               

               
Cow position:
               
chr1:16297759-16297925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
338-475
               

               
Cow position:
               
chr1:99262421-99262558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
338-501
               

               
Cow position:
               
chr1:88308157-88307995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
338-502
               

               
Cow position:
               
chr1:56747870-56748037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
338-508
               

               
Cow position:
               
chr1:10624258-10624428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 96
               

               
Conread position:
               
338-508
               

               
Cow position:
               
chr1:12746346-12746178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
338-508
               

               
Cow position:
               
chr1:31341744-31341569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 148
               

               
Conread position:
               
338-508
               

               
Cow position:
               
chr1:98612513-98612684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 75
               

               
Conread position:
               
340-508
               

               
Cow position:
               
chr1:55137933-55137762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
340-508
               

               
Cow position:
               
chr1:56411610-56411777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
341-508
               

               
Cow position:
               
chr1:2751991-2752158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
341-508
               

               
Cow position:
               
chr1:50657207-50657041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
342-506
               

               
Cow position:
               
chr1:99105579-99105414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
345-508
               

               
Cow position:
               
chr1:57421817-57421656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
120, 99
               

               
Conread position:
               
346-508
               

               
Cow position:
               
chr1:19776099-19776261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-508
               

               
Cow position:
               
chr1:69534498-69534660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
347-508
               

               
Cow position:
               
chr1:89834423-89834581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
349-508
               

               
Cow position:
               
chr1:33533686-33533845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
349-508
               

               
Cow position:
               
chr1:50687301-50687460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
350-508
               

               
Cow position:
               
chr1:97145732-97145578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
353-508
               

               
Cow position:
               
chr1:56620213-56620058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
354-502
               

               
Cow position:
               
chr1:95071027-95071176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
355-507
               

               
Cow position:
               
chr1:4031959-4032114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
356-504
               

               
Cow position:
               
chr1:83583633-83583484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
356-508
               

               
Cow position:
               
chr1:26606890-26606738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
356-508
               

               
Cow position:
               
chr1:28067428-28067580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
356-508
               

               
Cow position:
               
chr1:77840869-77841021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
356-508
               

               
Cow position:
               
chr1:101792762-101792612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
357-508
               

               
Cow position:
               
chr1:24420144-24419994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
359-507
               

               
Cow position:
               
chr1:68827644-68827496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
360-508
               

               
Cow position:
               
chr1:35147952-35147804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-496
               

               
Cow position:
               
chr1:92371036-92370902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-504
               

               
Cow position:
               
chr1:33081735-33081590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
362-507
               

               
Cow position:
               
chr1:80062882-80063027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-508
               

               
Cow position:
               
chr1:1023477-1023331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-508
               

               
Cow position:
               
chr1:1404117-1403973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
362-508
               

               
Cow position:
               
chr1:37887420-37887274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-508
               

               
Cow position:
               
chr1:42714250-42714104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-508
               

               
Cow position:
               
chr1:52068103-52068249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
362-508
               

               
Cow position:
               
chr1:65907752-65907903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
362-508
               

               
Cow position:
               
chr1:84786492-84786349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
363-501
               

               
Cow position:
               
chr1:67192702-67192560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
363-508
               

               
Cow position:
               
chr1:7686306-7686161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
363-508
               

               
Cow position:
               
chr1:50931973-50931829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
364-508
               

               
Cow position:
               
chr1:3382319-3382178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
366-508
               

               
Cow position:
               
chr1:11914535-11914393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
367-500
               

               
Cow position:
               
chr1:55135099-55135231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
367-508
               

               
Cow position:
               
chr1:83576554-83576413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
372-508
               

               
Cow position:
               
chr1:7750716-7750849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
372-508
               

               
Cow position:
               
chr1:19793512-19793648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
374-483
               

               
Cow position:
               
chr1:96135854-96135963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
374-508
               

               
Cow position:
               
chr1:4218763-4218629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
374-508
               

               
Cow position:
               
chr1:22629962-22630096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-499
               

               
Cow position:
               
chr1:41696405-41696528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
375-508
               

               
Cow position:
               
chr1:2075858-2075992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
375-508
               

               
Cow position:
               
chr1:33909968-33910101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-508
               

               
Cow position:
               
chr1:34400842-34400975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-508
               

               
Cow position:
               
chr1:37110473-37110340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-508
               

               
Cow position:
               
chr1:64613310-64613443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-508
               

               
Cow position:
               
chr1:68097552-68097419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
375-508
               

               
Cow position:
               
chr1:70532687-70532820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
376-508
               

               
Cow position:
               
chr1:53312754-53312886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
376-508
               

               
Cow position:
               
chr1:55145884-55146016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
377-508
               

               
Cow position:
               
chr1:40121846-40121977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
378-508
               

               
Cow position:
               
chr1:37563161-37563031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
378-508
               

               
Cow position:
               
chr1:47653963-47653833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
380-508
               

               
Cow position:
               
chr1:85412890-85413019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
383-508
               

               
Cow position:
               
chr1:8658999-8659124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
383-508
               

               
Cow position:
               
chr1:70053028-70053153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
384-508
               

               
Cow position:
               
chr1:34820543-34820667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
390-507
               

               
Cow position:
               
chr1:94227187-94227070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
390-508
               

               
Cow position:
               
chr1:95050789-95050671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
392-507
               

               
Cow position:
               
chr1:61070380-61070495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.