Cow genome map

Conread name: Ss1.1-Pig4-TMW8003A13.5

Conread position: 454-742
Cow position: chr24:5142200-5141913 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 43, 33

Conread position: 510-707
Cow position: chr24:7275901-7275709 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 36, 68

Conread position: 517-744
Cow position: chr24:28234236-28234014 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 57, 90

Conread position: 520-749
Cow position: chr24:42688036-42687813 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 14, 85

Conread position: 520-756
Cow position: chr24:3166015-3165776 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 23, 46

Conread position: 521-744
Cow position: chr24:27607919-27608129 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 25, 98

Conread position: 521-749
Cow position: chr24:19730974-19730744 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 156
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 114

Conread position: 522-715
Cow position: chr24:40811857-40811677 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 524-753
Cow position: chr24:11887342-11887121 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 48

Conread position: 524-758
Cow position: chr24:2992691-2992924 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 22, 129

Conread position: 524-761
Cow position: chr24:22133353-22133124 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 26

Conread position: 525-694
Cow position: chr24:6488392-6488227 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 32

Conread position: 525-704
Cow position: chr24:21656596-21656415 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 105, 24

Conread position: 525-728
Cow position: chr24:358560-358351 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 17, 109

Conread position: 525-739
Cow position: chr24:10499406-10499188 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 21, 171

Conread position: 525-743
Cow position: chr24:37038083-37037870 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 30, 82

Conread position: 525-744
Cow position: chr24:2380143-2379921 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 525-744
Cow position: chr24:40301348-40301129 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 23, 134

Conread position: 525-749
Cow position: chr24:24490837-24491052 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 14, 79

Conread position: 525-749
Cow position: chr24:28303173-28303400 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 14, 91

Conread position: 525-749
Cow position: chr24:43028140-43028363 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 19, 196

Conread position: 525-759
Cow position: chr24:18484805-18485040 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 124

Conread position: 525-801
Cow position: chr24:3412868-3412593 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 240, 103

Conread position: 526-729
Cow position: chr24:6887193-6886995 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 75

Conread position: 526-744
Cow position: chr24:7757955-7757741 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 88, 0

Conread position: 526-744
Cow position: chr24:28510978-28510766 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 19, 90

Conread position: 527-744
Cow position: chr24:13948307-13948092 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 96, 50

Conread position: 527-744
Cow position: chr24:18356872-18357083 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 527-744
Cow position: chr24:30236058-30235842 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 173

Conread position: 527-749
Cow position: chr24:230466-230243 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 19, 76

Conread position: 527-758
Cow position: chr24:39523264-39523494 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 11, 103

Conread position: 528-753
Cow position: chr24:37651905-37651686 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 46, 89

Conread position: 529-729
Cow position: chr24:32890862-32891060 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 34

Conread position: 529-732
Cow position: chr24:23863442-23863648 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 125

Conread position: 529-744
Cow position: chr24:26880940-26880722 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 12, 113

Conread position: 530-743
Cow position: chr24:2402194-2402398 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 53

Conread position: 530-744
Cow position: chr24:17311045-17311248 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 42

Conread position: 530-749
Cow position: chr24:27285008-27284786 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 17, 175

Conread position: 530-759
Cow position: chr24:27844352-27844573 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 531-749
Cow position: chr24:37823705-37823492 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 98, 0

Conread position: 531-767
Cow position: chr24:20364234-20364464 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 15, 63

Conread position: 532-744
Cow position: chr24:27713226-27713436 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 17, 76

Conread position: 533-756
Cow position: chr24:34742930-34742710 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 13, 40

Conread position: 534-744
Cow position: chr24:21834785-21834990 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 84, 0

Conread position: 536-707
Cow position: chr24:28255886-28256053 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 10, 81

Conread position: 536-728
Cow position: chr24:36775594-36775792 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 58

Conread position: 536-744
Cow position: chr24:1269956-1269755 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 70

Conread position: 536-744
Cow position: chr24:18474552-18474760 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 95

Conread position: 536-744
Cow position: chr24:29984815-29985015 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 536-749
Cow position: chr24:28063125-28062914 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 44, 13

Conread position: 536-758
Cow position: chr24:17104393-17104615 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 10, 35

Conread position: 537-744
Cow position: chr24:28496406-28496613 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 18

Conread position: 537-749
Cow position: chr24:37974807-37975016 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 8, 83

Conread position: 537-753
Cow position: chr24:35675707-35675500 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 8, 79

Conread position: 538-749
Cow position: chr24:27349001-27349209 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 69, 30

Conread position: 538-749
Cow position: chr24:31812360-31812154 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 70

Conread position: 542-739
Cow position: chr24:31816746-31816552 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 10, 31

Conread position: 545-696
Cow position: chr24:24540325-24540474 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 75

Conread position: 545-709
Cow position: chr24:24091167-24091336 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 545-718
Cow position: chr24:10219219-10219390 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 545-727
Cow position: chr24:27940461-27940635 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 103, 53

Conread position: 545-729
Cow position: chr24:16510138-16509961 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 545-741
Cow position: chr24:37650842-37650646 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 59, 121

Conread position: 545-742
Cow position: chr24:33244553-33244366 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 58

Conread position: 545-744
Cow position: chr24:5360878-5360688 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 71, 0

Conread position: 545-744
Cow position: chr24:25122504-25122313 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 83, 0

Conread position: 545-744
Cow position: chr24:29539763-29539960 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 85, 0

Conread position: 545-744
Cow position: chr24:30313862-30314057 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 73, 0

Conread position: 545-749
Cow position: chr24:33372713-33372520 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 545-758
Cow position: chr24:34896534-34896743 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 210, 74

Conread position: 545-760
Cow position: chr24:23694744-23694952 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 129, 27

Conread position: 548-708
Cow position: chr24:25947695-25947857 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 58, 94

Conread position: 548-749
Cow position: chr24:15246494-15246678 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 548-756
Cow position: chr24:29561415-29561615 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 548-769
Cow position: chr24:13610465-13610255 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 192, 55

Conread position: 551-728
Cow position: chr24:28043155-28042960 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 551-749
Cow position: chr24:41916418-41916218 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 162, 75

Conread position: 552-746
Cow position: chr24:15288987-15288794 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 73, 55

Conread position: 553-765
Cow position: chr24:20874839-20874630 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 202, 75

Conread position: 573-741
Cow position: chr24:31359457-31359293 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 579-750
Cow position: chr24:27725878-27726048 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 120
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 167, 0

Conread position: 604-749
Cow position: chr24:39791649-39791506 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 25

Conread position: 607-728
Cow position: chr24:5754939-5754821 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 607-742
Cow position: chr24:14457620-14457751 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 607-744
Cow position: chr24:17375741-17375607 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Show alignments to all cow chromosomes.