Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8003A18.5
        

               Conread position:
               7-400
               

               Cow position:
               chr1:85143807-85143415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               266
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               115, 62
               

               Conread position:
               13-400
               

               Cow position:
               chr1:76850153-76849751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               103, 312
               

               Conread position:
               37-414
               

               Cow position:
               chr1:9263459-9263062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 217
               

               Conread position:
               60-613
               

               Cow position:
               chr1:58088874-58088280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 269
               

               Conread position:
               62-403
               

               Cow position:
               chr1:16118173-16118508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               248
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               9, 68
               

               Conread position:
               62-414
               

               Cow position:
               chr1:82921479-82921106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               264
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               9, 132
               

               Conread position:
               62-566
               

               Cow position:
               chr1:72184192-72183650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 164
               

               Conread position:
               62-634
               

               Cow position:
               chr1:94662349-94662949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               613
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 73
               

               Conread position:
               64-329
               

               Cow position:
               chr1:13437789-13437505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 199
               

               Conread position:
               64-408
               

               Cow position:
               chr1:52356594-52356231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 189
               

               Conread position:
               64-634
               

               Cow position:
               chr1:18963053-18962435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               624
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 202
               

               Conread position:
               64-634
               

               Cow position:
               chr1:35599128-35598514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 187
               

               Conread position:
               64-657
               

               Cow position:
               chr1:72113682-72114270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 56
               

               Conread position:
               66-397
               

               Cow position:
               chr1:61537321-61536969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 76
               

               Conread position:
               66-400
               

               Cow position:
               chr1:44949951-44950297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               21, 41
               

               Conread position:
               66-414
               

               Cow position:
               chr1:9261181-9261555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 272
               

               Conread position:
               66-414
               

               Cow position:
               chr1:19236834-19236454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               256
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               52, 279
               

               Conread position:
               66-414
               

               Cow position:
               chr1:29037218-29037585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               257
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               21, 191
               

               Conread position:
               66-414
               

               Cow position:
               chr1:89431082-89431446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 184
               

               Conread position:
               66-618
               

               Cow position:
               chr1:40057792-40058385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 187
               

               Conread position:
               66-634
               

               Cow position:
               chr1:71560066-71559448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 185
               

               Conread position:
               66-657
               

               Cow position:
               chr1:31363421-31362794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 187
               

               Conread position:
               67-399
               

               Cow position:
               chr1:30649498-30649154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               233
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               22, 91
               

               Conread position:
               67-400
               

               Cow position:
               chr1:28676766-28677100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               19, 87
               

               Conread position:
               67-656
               

               Cow position:
               chr1:79913628-79914233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 57
               

               Conread position:
               68-391
               

               Cow position:
               chr1:98788475-98788812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               233
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               19, 242
               

               Conread position:
               68-400
               

               Cow position:
               chr1:28568030-28567695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 156
               

               Conread position:
               68-400
               

               Cow position:
               chr1:31317808-31317462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               9, 196
               

               Conread position:
               68-414
               

               Cow position:
               chr1:29608422-29608056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               258
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               9, 264
               

               Conread position:
               70-267
               

               Cow position:
               chr1:52775886-52775672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               70-358
               

               Cow position:
               chr1:74283987-74283681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               20, 73
               

               Conread position:
               70-367
               

               Cow position:
               chr1:56191468-56191155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               16, 241
               

               Conread position:
               70-379
               

               Cow position:
               chr1:28414526-28414205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               24, 248
               

               Conread position:
               70-395
               

               Cow position:
               chr1:22346346-22346683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               28, 101
               

               Conread position:
               70-397
               

               Cow position:
               chr1:16974436-16974099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               238
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               35, 170
               

               Conread position:
               70-409
               

               Cow position:
               chr1:23970127-23969771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               253
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               27, 262
               

               Conread position:
               70-413
               

               Cow position:
               chr1:21995329-21994970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               16, 104
               

               Conread position:
               70-414
               

               Cow position:
               chr1:28875772-28876135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               259
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               16, 187
               

               Conread position:
               70-414
               

               Cow position:
               chr1:32565247-32564884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 183
               

               Conread position:
               70-414
               

               Cow position:
               chr1:99916117-99916483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 183
               

               Conread position:
               70-609
               

               Cow position:
               chr1:57363649-57363062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 166
               

               Conread position:
               70-612
               

               Cow position:
               chr1:26812390-26811798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 181
               

               Conread position:
               70-613
               

               Cow position:
               chr1:57570518-57571106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 183
               

               Conread position:
               70-619
               

               Cow position:
               chr1:85777779-85777178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 183
               

               Conread position:
               70-619
               

               Cow position:
               chr1:100708752-100709352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 183
               

               Conread position:
               70-631
               

               Cow position:
               chr1:53310920-53311522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               393
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               48, 179
               

               Conread position:
               70-634
               

               Cow position:
               chr1:58339611-58340218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               621
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 69
               

               Conread position:
               70-634
               

               Cow position:
               chr1:63603104-63602492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               615
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 187
               

               Conread position:
               70-634
               

               Cow position:
               chr1:69405838-69406454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 183
               

               Conread position:
               70-634
               

               Cow position:
               chr1:72086276-72086895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 183
               

               Conread position:
               70-634
               

               Cow position:
               chr1:72986141-72986754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 183
               

               Conread position:
               70-634
               

               Cow position:
               chr1:76618790-76618178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 82
               

               Conread position:
               70-634
               

               Cow position:
               chr1:86600335-86599719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               617
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               70-634
               

               Cow position:
               chr1:89186758-89186162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 181
               

               Conread position:
               70-634
               

               Cow position:
               chr1:93857202-93857818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 262
               

               Conread position:
               70-637
               

               Cow position:
               chr1:91890712-91890092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 184
               

               Conread position:
               70-639
               

               Cow position:
               chr1:56141673-56141051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 198
               

               Conread position:
               70-654
               

               Cow position:
               chr1:81926478-81925864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 82
               

               Conread position:
               70-662
               

               Cow position:
               chr1:44963794-44963157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               641
               

               Alignm identity:
               407
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               9, 181
               

               Conread position:
               70-667
               

               Cow position:
               chr1:31191726-31191096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               638
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 137
               

               Conread position:
               70-672
               

               Cow position:
               chr1:18281665-18282309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               655
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 182
               

               Conread position:
               70-672
               

               Cow position:
               chr1:79113118-79113750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               641
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 225
               

               Conread position:
               71-372
               

               Cow position:
               chr1:30439674-30439988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               29, 103
               

               Conread position:
               71-372
               

               Cow position:
               chr1:55318959-55318644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               227
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               17, 181
               

               Conread position:
               71-408
               

               Cow position:
               chr1:102322415-102322063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 183
               

               Conread position:
               71-634
               

               Cow position:
               chr1:5504623-5505235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 189
               

               Conread position:
               71-634
               

               Cow position:
               chr1:58171422-58172034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 181
               

               Conread position:
               71-654
               

               Cow position:
               chr1:86363146-86363786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               644
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 252
               

               Conread position:
               71-672
               

               Cow position:
               chr1:25088984-25088338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               655
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 72
               

               Conread position:
               75-402
               

               Cow position:
               chr1:23579106-23578773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               43, 77
               

               Conread position:
               75-414
               

               Cow position:
               chr1:24441360-24441004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 176
               

               Conread position:
               75-414
               

               Cow position:
               chr1:86506941-86506582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               43, 257
               

               Conread position:
               75-417
               

               Cow position:
               chr1:61203069-61203431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 256
               

               Conread position:
               75-557
               

               Cow position:
               chr1:18195313-18195830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 184
               

               Conread position:
               75-630
               

               Cow position:
               chr1:98657258-98656661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 70
               

               Conread position:
               75-634
               

               Cow position:
               chr1:3383627-3383023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 176
               

               Conread position:
               76-348
               

               Cow position:
               chr1:31530973-31531259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               44, 249
               

               Conread position:
               76-359
               

               Cow position:
               chr1:33391759-33392055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               42, 174
               

               Conread position:
               76-391
               

               Cow position:
               chr1:40483587-40483270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               229
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               42, 84
               

               Conread position:
               76-398
               

               Cow position:
               chr1:21353759-21353424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               47, 65
               

               Conread position:
               76-400
               

               Cow position:
               chr1:59484175-59483834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 185
               

               Conread position:
               76-400
               

               Cow position:
               chr1:61562725-61563066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               47, 251
               

               Conread position:
               76-402
               

               Cow position:
               chr1:56169648-56169991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-402
               

               Cow position:
               chr1:74303676-74303333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               227
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               46, 258
               

               Conread position:
               76-403
               

               Cow position:
               chr1:86593615-86593271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 174
               

               Conread position:
               76-409
               

               Cow position:
               chr1:93112683-93112335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               38, 175
               

               Conread position:
               76-413
               

               Cow position:
               chr1:61343024-61342669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 176
               

               Conread position:
               76-414
               

               Cow position:
               chr1:11289917-11289562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 175
               

               Conread position:
               76-414
               

               Cow position:
               chr1:17436987-17436631 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-414
               

               Cow position:
               chr1:21090138-21090493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               251
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               42, 253
               

               Conread position:
               76-414
               

               Cow position:
               chr1:29365096-29365451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-414
               

               Cow position:
               chr1:46613600-46613249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               253
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               42, 23
               

               Conread position:
               76-414
               

               Cow position:
               chr1:55328723-55328374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 170
               

               Conread position:
               76-414
               

               Cow position:
               chr1:55779560-55779915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 175
               

               Conread position:
               76-414
               

               Cow position:
               chr1:67005571-67005924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 173
               

               Conread position:
               76-414
               

               Cow position:
               chr1:67832453-67832093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 180
               

               Conread position:
               76-414
               

               Cow position:
               chr1:76872573-76872925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 171
               

               Conread position:
               76-414
               

               Cow position:
               chr1:89090853-89090493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 258
               

               Conread position:
               76-417
               

               Cow position:
               chr1:40577627-40577988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-527
               

               Cow position:
               chr1:29949120-29948636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               340
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               45, 81
               

               Conread position:
               76-583
               

               Cow position:
               chr1:17010002-17009478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 179
               

               Conread position:
               76-618
               

               Cow position:
               chr1:17033901-17033313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               594
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-618
               

               Cow position:
               chr1:33548711-33548121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 173
               

               Conread position:
               76-620
               

               Cow position:
               chr1:86704838-86705434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 254
               

               Conread position:
               76-630
               

               Cow position:
               chr1:84446375-84446971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               392
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               42, 173
               

               Conread position:
               76-634
               

               Cow position:
               chr1:33853970-33854563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-634
               

               Cow position:
               chr1:55274349-55273746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               606
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-634
               

               Cow position:
               chr1:56725861-56726460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 171
               

               Conread position:
               76-634
               

               Cow position:
               chr1:57525973-57526572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               602
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 184
               

               Conread position:
               76-634
               

               Cow position:
               chr1:81301806-81302412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               612
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-634
               

               Cow position:
               chr1:86545448-86544842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-634
               

               Cow position:
               chr1:89493524-89492934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 175
               

               Conread position:
               76-657
               

               Cow position:
               chr1:66972467-66971840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 114
               

               Conread position:
               76-662
               

               Cow position:
               chr1:13580063-13579454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               398
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               42, 256
               

               Conread position:
               76-672
               

               Cow position:
               chr1:82369118-82369751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               638
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 252
               

               Conread position:
               77-397
               

               Cow position:
               chr1:88532548-88532223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               241
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               44, 79
               

               Conread position:
               77-414
               

               Cow position:
               chr1:39546472-39546825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 174
               

               Conread position:
               77-414
               

               Cow position:
               chr1:63045456-63045106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 92
               

               Conread position:
               77-634
               

               Cow position:
               chr1:10725313-10725920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               610
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 173
               

               Conread position:
               77-655
               

               Cow position:
               chr1:72996679-72997288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 15
               

               Conread position:
               78-522
               

               Cow position:
               chr1:71898871-71899318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               302
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               38, 78
               

               Conread position:
               79-589
               

               Cow position:
               chr1:89111524-89112082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 176
               

               Conread position:
               79-669
               

               Cow position:
               chr1:102432048-102431409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               642
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 172
               

               Conread position:
               80-414
               

               Cow position:
               chr1:38477996-38478348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 172
               

               Conread position:
               80-669
               

               Cow position:
               chr1:24654531-24655160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               637
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 248
               

               Conread position:
               82-377
               

               Cow position:
               chr1:34317077-34316765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               215
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               36, 107
               

               Conread position:
               82-397
               

               Cow position:
               chr1:44973996-44974326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               15, 246
               

               Conread position:
               82-400
               

               Cow position:
               chr1:34914295-34914623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               234
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               70, 103
               

               Conread position:
               82-400
               

               Cow position:
               chr1:53371061-53371387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               70, 27
               

               Conread position:
               82-609
               

               Cow position:
               chr1:99309455-99308917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               551
               

               Alignm identity:
               339
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               70, 15
               

               Conread position:
               83-390
               

               Cow position:
               chr1:70388617-70388293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               23, 166
               

               Conread position:
               83-654
               

               Cow position:
               chr1:54115959-54116563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 41
               

               Conread position:
               83-655
               

               Cow position:
               chr1:68847004-68846393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               620
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 16
               

               Conread position:
               84-598
               

               Cow position:
               chr1:42739109-42739667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               561
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 167
               

               Conread position:
               84-604
               

               Cow position:
               chr1:51966959-51967520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 202
               

               Conread position:
               85-400
               

               Cow position:
               chr1:22726995-22727319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               229
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               37, 67
               

               Conread position:
               85-400
               

               Cow position:
               chr1:81374302-81373982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 40
               

               Conread position:
               85-401
               

               Cow position:
               chr1:30306587-30306259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               27, 58
               

               Conread position:
               85-403
               

               Cow position:
               chr1:29902485-29902151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 242
               

               Conread position:
               85-408
               

               Cow position:
               chr1:102551708-102552049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 13
               

               Conread position:
               85-414
               

               Cow position:
               chr1:40682027-40681688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               246
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               69, 12
               

               Conread position:
               85-414
               

               Cow position:
               chr1:67289110-67289454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 202
               

               Conread position:
               85-414
               

               Cow position:
               chr1:79454265-79453923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               85-414
               

               Cow position:
               chr1:88178555-88178901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 166
               

               Conread position:
               85-417
               

               Cow position:
               chr1:53422598-53422943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 176
               

               Conread position:
               85-584
               

               Cow position:
               chr1:11666866-11666317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               553
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 167
               

               Conread position:
               85-612
               

               Cow position:
               chr1:65389256-65389833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 166
               

               Conread position:
               85-634
               

               Cow position:
               chr1:66490280-66490877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 165
               

               Conread position:
               85-657
               

               Cow position:
               chr1:30078645-30079260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 164
               

               Conread position:
               85-663
               

               Cow position:
               chr1:40510553-40509930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 105
               

               Conread position:
               86-634
               

               Cow position:
               chr1:85794671-85795243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 62
               

               Conread position:
               86-669
               

               Cow position:
               chr1:68602926-68602300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               635
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 61
               

               Conread position:
               87-613
               

               Cow position:
               chr1:82072298-82072828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               336
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               17, 119
               

               Conread position:
               88-285
               

               Cow position:
               chr1:22631308-22631096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               88-315
               

               Cow position:
               chr1:30715982-30715738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-336
               

               Cow position:
               chr1:57948761-57949026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               33, 241
               

               Conread position:
               88-359
               

               Cow position:
               chr1:22216600-22216879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               64, 159
               

               Conread position:
               88-359
               

               Cow position:
               chr1:22241431-22241714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               65, 158
               

               Conread position:
               88-395
               

               Cow position:
               chr1:39250760-39250439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               236
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               33, 246
               

               Conread position:
               88-397
               

               Cow position:
               chr1:7164790-7165117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               237
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-397
               

               Cow position:
               chr1:67911463-67911780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               17, 57
               

               Conread position:
               88-397
               

               Cow position:
               chr1:75832735-75833064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               65, 227
               

               Conread position:
               88-400
               

               Cow position:
               chr1:8556387-8556715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 18
               

               Conread position:
               88-400
               

               Cow position:
               chr1:22222724-22223053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-400
               

               Cow position:
               chr1:23039797-23040125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               234
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               31, 83
               

               Conread position:
               88-400
               

               Cow position:
               chr1:31239525-31239199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               243
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               34, 163
               

               Conread position:
               88-400
               

               Cow position:
               chr1:31724889-31724569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               30, 227
               

               Conread position:
               88-400
               

               Cow position:
               chr1:33364269-33363940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               239
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-400
               

               Cow position:
               chr1:89483827-89484145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               18, 159
               

               Conread position:
               88-400
               

               Cow position:
               chr1:99989206-99989535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               240
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-400
               

               Cow position:
               chr1:100509450-100509780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               30, 240
               

               Conread position:
               88-402
               

               Cow position:
               chr1:77109421-77109089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               25, 60
               

               Conread position:
               88-409
               

               Cow position:
               chr1:40747334-40747017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               69, 30
               

               Conread position:
               88-409
               

               Cow position:
               chr1:70863739-70864076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               246
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               64, 28
               

               Conread position:
               88-414
               

               Cow position:
               chr1:4209213-4208870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-414
               

               Cow position:
               chr1:13251815-13251473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               248
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               30, 57
               

               Conread position:
               88-414
               

               Cow position:
               chr1:30103877-30103534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-414
               

               Cow position:
               chr1:54932627-54932971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               248
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               30, 162
               

               Conread position:
               88-414
               

               Cow position:
               chr1:61332261-61331919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-414
               

               Cow position:
               chr1:68275210-68275546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               239
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               24, 174
               

               Conread position:
               88-414
               

               Cow position:
               chr1:70069365-70069708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-414
               

               Cow position:
               chr1:76877733-76878075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               30, 162
               

               Conread position:
               88-414
               

               Cow position:
               chr1:79633852-79633509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 146
               

               Conread position:
               88-414
               

               Cow position:
               chr1:82478685-82479028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-414
               

               Cow position:
               chr1:87722987-87722644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-414
               

               Cow position:
               chr1:91104743-91105085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-414
               

               Cow position:
               chr1:92034801-92035141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               249
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-418
               

               Cow position:
               chr1:50257212-50257554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               37, 234
               

               Conread position:
               88-452
               

               Cow position:
               chr1:90973654-90974053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               277
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               30, 253
               

               Conread position:
               88-573
               

               Cow position:
               chr1:52336040-52335523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 374
               

               Conread position:
               88-599
               

               Cow position:
               chr1:43245925-43245420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               335
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               58, 81
               

               Conread position:
               88-616
               

               Cow position:
               chr1:61140141-61140697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               570
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 84
               

               Conread position:
               88-618
               

               Cow position:
               chr1:8745198-8745777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-618
               

               Cow position:
               chr1:49267583-49268164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               584
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 163
               

               Conread position:
               88-618
               

               Cow position:
               chr1:63045586-63046165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 149
               

               Conread position:
               88-618
               

               Cow position:
               chr1:71794237-71794813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               582
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 163
               

               Conread position:
               88-619
               

               Cow position:
               chr1:31415519-31414941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 542
               

               Conread position:
               88-619
               

               Cow position:
               chr1:73064633-73064054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               583
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 13
               

               Conread position:
               88-619
               

               Cow position:
               chr1:88676184-88676736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               557
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 242
               

               Conread position:
               88-619
               

               Cow position:
               chr1:100451949-100451388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               569
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 67
               

               Conread position:
               88-633
               

               Cow position:
               chr1:31253895-31253338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 29
               

               Conread position:
               88-634
               

               Cow position:
               chr1:7196517-7195923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 9
               

               Conread position:
               88-634
               

               Cow position:
               chr1:8471459-8470866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-634
               

               Cow position:
               chr1:14529754-14529163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 197
               

               Conread position:
               88-634
               

               Cow position:
               chr1:21377858-21377262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               600
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 178
               

               Conread position:
               88-634
               

               Cow position:
               chr1:57121102-57120535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 158
               

               Conread position:
               88-634
               

               Cow position:
               chr1:60341751-60342352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               604
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-634
               

               Cow position:
               chr1:61096198-61096796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-634
               

               Cow position:
               chr1:77747446-77748039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               596
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-634
               

               Cow position:
               chr1:82910130-82909535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               599
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-634
               

               Cow position:
               chr1:91901723-91902315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 159
               

               Conread position:
               88-636
               

               Cow position:
               chr1:62927169-62927767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-637
               

               Cow position:
               chr1:28713743-28714338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               597
               

               Alignm identity:
               393
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-637
               

               Cow position:
               chr1:40919840-40920437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 162
               

               Conread position:
               88-651
               

               Cow position:
               chr1:102776429-102775844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               591
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 260
               

               Conread position:
               88-653
               

               Cow position:
               chr1:9525646-9525064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               585
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               30, 163
               

               Conread position:
               88-653
               

               Cow position:
               chr1:57970888-57970278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               616
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 157
               

               Conread position:
               88-654
               

               Cow position:
               chr1:73384182-73384776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 143
               

               Conread position:
               88-657
               

               Cow position:
               chr1:21544491-21545090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               611
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 149
               

               Conread position:
               88-667
               

               Cow position:
               chr1:101833107-101833725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               623
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 53
               

               Conread position:
               88-669
               

               Cow position:
               chr1:11199931-11199300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               635
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 167
               

               Conread position:
               88-669
               

               Cow position:
               chr1:21458405-21459014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               627
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 37
               

               Conread position:
               88-669
               

               Cow position:
               chr1:46838501-46839117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               407
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               64, 237
               

               Conread position:
               88-669
               

               Cow position:
               chr1:73762826-73762215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               626
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 165
               

               Conread position:
               88-669
               

               Cow position:
               chr1:90912530-90913159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               633
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 172
               

               Conread position:
               88-670
               

               Cow position:
               chr1:14562510-14561880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               632
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 244
               

               Conread position:
               88-671
               

               Cow position:
               chr1:43568795-43568178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               622
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 249
               

               Conread position:
               88-672
               

               Cow position:
               chr1:30065061-30065711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               658
               

               Alignm identity:
               441
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               30, 261
               

               Conread position:
               88-672
               

               Cow position:
               chr1:31400703-31400109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               614
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 221
               

               Conread position:
               88-672
               

               Cow position:
               chr1:82863517-82864154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               641
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 248
               

               Conread position:
               89-396
               

               Cow position:
               chr1:57694937-57694622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               29, 154
               

               Conread position:
               89-397
               

               Cow position:
               chr1:38409919-38410235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               227
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               29, 158
               

               Conread position:
               89-400
               

               Cow position:
               chr1:22760724-22761038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               54, 86
               

               Conread position:
               89-414
               

               Cow position:
               chr1:21576251-21576591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 238
               

               Conread position:
               89-414
               

               Cow position:
               chr1:56424612-56424954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               246
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               29, 162
               

               Conread position:
               89-414
               

               Cow position:
               chr1:73434624-73434282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 162
               

               Conread position:
               89-537
               

               Cow position:
               chr1:69246534-69247015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               488
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 59
               

               Conread position:
               89-619
               

               Cow position:
               chr1:30532322-30531739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 162
               

               Conread position:
               89-652
               

               Cow position:
               chr1:81357940-81357342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               608
               

               Alignm identity:
               387
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               33, 240
               

               Conread position:
               89-654
               

               Cow position:
               chr1:92554056-92553459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 190
               

               Conread position:
               89-656
               

               Cow position:
               chr1:99108533-99107909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               628
               

               Alignm identity:
               414
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               5, 250
               

               Conread position:
               89-669
               

               Cow position:
               chr1:100420304-100420928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 242
               

               Conread position:
               89-672
               

               Cow position:
               chr1:61748737-61748118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               629
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               90-367
               

               Cow position:
               chr1:9513944-9513658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               62, 23
               

               Conread position:
               90-414
               

               Cow position:
               chr1:57659325-57659662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               241
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               12, 199
               

               Conread position:
               90-414
               

               Cow position:
               chr1:101011213-101010872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               236
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               28, 241
               

               Conread position:
               90-634
               

               Cow position:
               chr1:27310344-27309782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               573
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 12
               

               Conread position:
               91-392
               

               Cow position:
               chr1:12802785-12803105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               231
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               27, 237
               

               Conread position:
               91-392
               

               Cow position:
               chr1:23189695-23190011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               27, 157
               

               Conread position:
               91-397
               

               Cow position:
               chr1:68456968-68457287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               34, 14
               

               Conread position:
               91-409
               

               Cow position:
               chr1:21677514-21677838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               30, 51
               

               Conread position:
               92-596
               

               Cow position:
               chr1:62142207-62141670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               552
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 21
               

               Conread position:
               93-612
               

               Cow position:
               chr1:85530674-85530139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               546
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 75
               

               Conread position:
               94-397
               

               Cow position:
               chr1:39142451-39142141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               32, 147
               

               Conread position:
               97-404
               

               Cow position:
               chr1:88301046-88301379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               21, 241
               

               Conread position:
               97-414
               

               Cow position:
               chr1:72598848-72599160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               21, 90
               

               Conread position:
               97-523
               

               Cow position:
               chr1:72036593-72036158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               272
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               16, 28
               

               Conread position:
               98-381
               

               Cow position:
               chr1:57744508-57744217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               7, 51
               

               Conread position:
               99-660
               

               Cow position:
               chr1:46802237-46802823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               598
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 76
               

               Conread position:
               102-414
               

               Cow position:
               chr1:79335456-79335135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               14, 23
               

               Conread position:
               105-654
               

               Cow position:
               chr1:38383809-38383254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               576
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 34
               

               Conread position:
               107-613
               

               Cow position:
               chr1:73553977-73554515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               543
               

               Alignm identity:
               352
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               19, 226
               

               Conread position:
               107-667
               

               Cow position:
               chr1:11324237-11324836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               605
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 187
               

               Conread position:
               109-400
               

               Cow position:
               chr1:20044756-20045050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               43, 188
               

               Conread position:
               110-550
               

               Cow position:
               chr1:79254781-79255236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               320
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               43, 17
               

               Conread position:
               117-591
               

               Cow position:
               chr1:22252461-22252942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 31
               

               Conread position:
               117-657
               

               Cow position:
               chr1:17939014-17938435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 187
               

               Conread position:
               117-657
               

               Cow position:
               chr1:25552541-25553123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 20
               

               Conread position:
               119-408
               

               Cow position:
               chr1:12058783-12058483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               33, 128
               

               Conread position:
               119-414
               

               Cow position:
               chr1:13405651-13405342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               227
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               35, 129
               

               Conread position:
               119-417
               

               Cow position:
               chr1:98617203-98617512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               226
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               33, 120
               

               Conread position:
               119-634
               

               Cow position:
               chr1:78922275-78921717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 128
               

               Conread position:
               120-634
               

               Cow position:
               chr1:32961769-32961207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 129
               

               Conread position:
               124-655
               

               Cow position:
               chr1:55144785-55145362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               580
               

               Alignm identity:
               379
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               28, 331
               

               Conread position:
               129-400
               

               Cow position:
               chr1:76861310-76861028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               26, 38
               

               Conread position:
               130-410
               

               Cow position:
               chr1:20378424-20378706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               22, 66
               

               Conread position:
               130-634
               

               Cow position:
               chr1:20847257-20846717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 115
               

               Conread position:
               130-655
               

               Cow position:
               chr1:34684244-34684803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               564
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 173
               

               Conread position:
               131-364
               

               Cow position:
               chr1:58217025-58217265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               21, 114
               

               Conread position:
               132-414
               

               Cow position:
               chr1:79553247-79553538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               213
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               38, 113
               

               Conread position:
               132-612
               

               Cow position:
               chr1:22838222-22837707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               337
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               20, 70
               

               Conread position:
               133-414
               

               Cow position:
               chr1:34532798-34533092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               21, 114
               

               Conread position:
               133-669
               

               Cow position:
               chr1:53309900-53309329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               587
               

               Alignm identity:
               402
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               19, 28
               

               Conread position:
               135-414
               

               Cow position:
               chr1:40533305-40533027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               18, 47
               

               Conread position:
               136-654
               

               Cow position:
               chr1:31813766-31814331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               382
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               16, 5
               

               Conread position:
               141-669
               

               Cow position:
               chr1:16798339-16797766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               578
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 186
               

               Conread position:
               142-414
               

               Cow position:
               chr1:6211998-6212284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               214
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               12, 105
               

               Conread position:
               142-414
               

               Cow position:
               chr1:91672990-91673275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               12, 105
               

               Conread position:
               157-612
               

               Cow position:
               chr1:26607788-26607291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 88
               

               Conread position:
               158-403
               

               Cow position:
               chr1:90606094-90605843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               17, 87
               

               Conread position:
               158-414
               

               Cow position:
               chr1:31596988-31597252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               18, 78
               

               Conread position:
               160-657
               

               Cow position:
               chr1:22530018-22529493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               536
               

               Alignm identity:
               360
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               38, 83
               

               Conread position:
               161-406
               

               Cow position:
               chr1:9377706-9377453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               38, 8
               

               Conread position:
               162-409
               

               Cow position:
               chr1:29704858-29704609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               41, 79
               

               Conread position:
               168-634
               

               Cow position:
               chr1:6197477-6196982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 47
               

               Conread position:
               173-400
               

               Cow position:
               chr1:20648233-20648469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               30, 70
               

               Conread position:
               173-414
               

               Cow position:
               chr1:14361678-14361428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               30, 70
               

               Conread position:
               173-414
               

               Cow position:
               chr1:21134314-21134064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               30, 70
               

               Conread position:
               175-633
               

               Cow position:
               chr1:72767231-72766741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 72
               

               Conread position:
               177-654
               

               Cow position:
               chr1:10006168-10005672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               509
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 66
               

               Conread position:
               182-668
               

               Cow position:
               chr1:22481845-22481329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 34
               

               Conread position:
               185-669
               

               Cow position:
               chr1:52755715-52755202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               520
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 28
               

               Conread position:
               187-623
               

               Cow position:
               chr1:88393754-88393299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               309
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               15, 6
               

               Conread position:
               187-662
               

               Cow position:
               chr1:51875980-51875493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               341
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               52, 28
               

               Conread position:
               190-662
               

               Cow position:
               chr1:21431478-21430986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 24
               

               Conread position:
               193-414
               

               Cow position:
               chr1:23658249-23658469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               194-400
               

               Cow position:
               chr1:17175806-17175607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               194-400
               

               Cow position:
               chr1:18024002-18023799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               75, 20
               

               Conread position:
               194-400
               

               Cow position:
               chr1:52171984-52171780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               163
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               48, 20
               

               Conread position:
               194-402
               

               Cow position:
               chr1:61747333-61747134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               34, 20
               

               Conread position:
               194-414
               

               Cow position:
               chr1:8827845-8828064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               48, 20
               

               Conread position:
               194-610
               

               Cow position:
               chr1:10011480-10011047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               308
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               168, 5
               

               Conread position:
               194-613
               

               Cow position:
               chr1:18024971-18024539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 20
               

               Conread position:
               194-657
               

               Cow position:
               chr1:2369935-2369462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               326
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               45, 7
               

               Conread position:
               194-672
               

               Cow position:
               chr1:88389160-88389656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               508
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 20
               

               Conread position:
               198-397
               

               Cow position:
               chr1:71677228-71677029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               41, 35
               

               Conread position:
               198-397
               

               Cow position:
               chr1:99689594-99689790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 16
               

               Conread position:
               198-414
               

               Cow position:
               chr1:19441696-19441482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               44, 16
               

               Conread position:
               198-636
               

               Cow position:
               chr1:33443325-33442872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               201-400
               

               Cow position:
               chr1:56645046-56644849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               68, 13
               

               Conread position:
               201-410
               

               Cow position:
               chr1:97285826-97285620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               38, 14
               

               Conread position:
               201-605
               

               Cow position:
               chr1:101131152-101130742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 13
               

               Conread position:
               201-650
               

               Cow position:
               chr1:86327056-86326566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 13
               

               Conread position:
               202-396
               

               Cow position:
               chr1:96194337-96194142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               14, 88
               

               Conread position:
               202-412
               

               Cow position:
               chr1:8528587-8528376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               68, 15
               

               Conread position:
               202-612
               

               Cow position:
               chr1:11018278-11018709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 13
               

               Conread position:
               207-397
               

               Cow position:
               chr1:95766453-95766265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               178, 22
               

               Conread position:
               208-656
               

               Cow position:
               chr1:31392455-31391981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               483
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 26
               

               Conread position:
               209-400
               

               Cow position:
               chr1:85323051-85323247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               24, 104
               

               Conread position:
               209-616
               

               Cow position:
               chr1:86451188-86451619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               293
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               60, 72
               

               Conread position:
               209-669
               

               Cow position:
               chr1:17293013-17292532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               486
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 105
               

               Conread position:
               209-672
               

               Cow position:
               chr1:56631227-56631712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               497
               

               Alignm identity:
               336
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               57, 105
               

               Conread position:
               210-347
               

               Cow position:
               chr1:10029466-10029330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               61, 87
               

               Conread position:
               210-381
               

               Cow position:
               chr1:52864430-52864263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               210-397
               

               Cow position:
               chr1:51392935-51393119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               59, 16
               

               Conread position:
               210-400
               

               Cow position:
               chr1:3669288-3669095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               15, 106
               

               Conread position:
               210-400
               

               Cow position:
               chr1:17250810-17251000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               210-400
               

               Cow position:
               chr1:18487338-18487148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               210-400
               

               Cow position:
               chr1:20831724-20831911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               210-400
               

               Cow position:
               chr1:67001049-67001239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               210-403
               

               Cow position:
               chr1:48411591-48411786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               61, 24
               

               Conread position:
               210-414
               

               Cow position:
               chr1:31351922-31351723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               210-414
               

               Cow position:
               chr1:60251587-60251383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               210-414
               

               Cow position:
               chr1:63341630-63341429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               210-414
               

               Cow position:
               chr1:83170479-83170683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               210-416
               

               Cow position:
               chr1:73565638-73565433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               210-594
               

               Cow position:
               chr1:39111523-39111944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               298
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               11, 89
               

               Conread position:
               211-634
               

               Cow position:
               chr1:26142368-26141911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 99
               

               Conread position:
               213-618
               

               Cow position:
               chr1:33040191-33039752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 21
               

               Conread position:
               217-409
               

               Cow position:
               chr1:21133017-21132826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               29, 17
               

               Conread position:
               217-414
               

               Cow position:
               chr1:4336074-4336271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               25, 17
               

               Conread position:
               217-414
               

               Cow position:
               chr1:26587797-26587994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               25, 17
               

               Conread position:
               223-417
               

               Cow position:
               chr1:48249567-48249761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               19, 11
               

               Conread position:
               224-394
               

               Cow position:
               chr1:16574054-16573885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               224-634
               

               Cow position:
               chr1:59203410-59202967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 10
               

               Conread position:
               225-408
               

               Cow position:
               chr1:100911997-100912180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               44, 87
               

               Conread position:
               228-413
               

               Cow position:
               chr1:69212102-69211917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               41, 84
               

               Conread position:
               229-581
               

               Cow position:
               chr1:72804650-72804265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 9
               

               Conread position:
               229-655
               

               Cow position:
               chr1:58196183-58195744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 55
               

               Conread position:
               232-414
               

               Cow position:
               chr1:28812381-28812199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               39, 80
               

               Conread position:
               233-655
               

               Cow position:
               chr1:7629853-7630286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               302
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               38, 86
               

               Conread position:
               242-634
               

               Cow position:
               chr1:25780172-25780582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               139, 21
               

               Conread position:
               243-400
               

               Cow position:
               chr1:61340448-61340291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               24, 69
               

               Conread position:
               243-516
               

               Cow position:
               chr1:81861135-81860860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 92
               

               Conread position:
               243-634
               

               Cow position:
               chr1:69504499-69504078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 69
               

               Conread position:
               243-668
               

               Cow position:
               chr1:56745756-56746213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 69
               

               Conread position:
               247-414
               

               Cow position:
               chr1:39889015-39889182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               129
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               20, 65
               

               Conread position:
               252-400
               

               Cow position:
               chr1:6164844-6164992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               17, 59
               

               Conread position:
               252-400
               

               Cow position:
               chr1:76852291-76852444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               17, 126
               

               Conread position:
               252-409
               

               Cow position:
               chr1:20867722-20867568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               19, 61
               

               Conread position:
               252-409
               

               Cow position:
               chr1:56439530-56439373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               48, 63
               

               Conread position:
               252-414
               

               Cow position:
               chr1:38711594-38711755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               13, 53
               

               Conread position:
               252-414
               

               Cow position:
               chr1:48345066-48345228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               15, 60
               

               Conread position:
               252-607
               

               Cow position:
               chr1:28650753-28650372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               276
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               19, 62
               

               Conread position:
               252-609
               

               Cow position:
               chr1:67975311-67974933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               274
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               17, 40
               

               Conread position:
               252-613
               

               Cow position:
               chr1:28251254-28251647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               269
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               17, 65
               

               Conread position:
               252-634
               

               Cow position:
               chr1:7837867-7837465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               13, 58
               

               Conread position:
               252-636
               

               Cow position:
               chr1:8603081-8602678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               288
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               17, 61
               

               Conread position:
               252-655
               

               Cow position:
               chr1:53647171-53647596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               15, 62
               

               Conread position:
               252-672
               

               Cow position:
               chr1:62731685-62732139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 59
               

               Conread position:
               254-374
               

               Cow position:
               chr1:100434100-100433980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               15, 56
               

               Conread position:
               254-400
               

               Cow position:
               chr1:57397466-57397318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               15, 60
               

               Conread position:
               254-417
               

               Cow position:
               chr1:33715840-33716007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               15, 58
               

               Conread position:
               255-587
               

               Cow position:
               chr1:57907644-57907994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               16, 37
               

               Conread position:
               258-414
               

               Cow position:
               chr1:10033397-10033553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               11, 53
               

               Conread position:
               258-634
               

               Cow position:
               chr1:82090801-82091190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               271
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               15, 54
               

               Conread position:
               258-656
               

               Cow position:
               chr1:57635935-57635500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               297
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               11, 56
               

               Conread position:
               259-400
               

               Cow position:
               chr1:99864806-99864945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               10, 51
               

               Conread position:
               261-415
               

               Cow position:
               chr1:37542415-37542261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               8, 53
               

               Conread position:
               263-662
               

               Cow position:
               chr1:38422348-38422769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               80, 50
               

               Conread position:
               265-609
               

               Cow position:
               chr1:58169520-58169168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 26
               

               Conread position:
               268-522
               

               Cow position:
               chr1:24203749-24203478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               133, 28
               

               Conread position:
               268-609
               

               Cow position:
               chr1:63048477-63048849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 41
               

               Conread position:
               268-668
               

               Cow position:
               chr1:53396612-53397033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               278
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               21, 28
               

               Conread position:
               269-669
               

               Cow position:
               chr1:22629914-22629503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               279
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               33, 43
               

               Conread position:
               274-414
               

               Cow position:
               chr1:7299929-7300067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               274-646
               

               Cow position:
               chr1:59248842-59248444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               278
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               126, 41
               

               Conread position:
               274-654
               

               Cow position:
               chr1:99629146-99628742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               281
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               125, 33
               

               Conread position:
               275-414
               

               Cow position:
               chr1:31106488-31106350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               275-618
               

               Cow position:
               chr1:13438029-13438401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 16
               

               Conread position:
               276-634
               

               Cow position:
               chr1:15149737-15149347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               276
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               90, 35
               

               Conread position:
               279-414
               

               Cow position:
               chr1:48811284-48811151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               283-414
               

               Cow position:
               chr1:18087342-18087472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               291-655
               

               Cow position:
               chr1:92008215-92008591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               258
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               72, 24
               

               Conread position:
               301-575
               

               Cow position:
               chr1:5492069-5492363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               115, 10
               

               Conread position:
               311-634
               

               Cow position:
               chr1:67078884-67078530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               49, 321
               

               Conread position:
               318-632
               

               Cow position:
               chr1:19161916-19162262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               251
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               319-641
               

               Cow position:
               chr1:81868524-81868173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               64, 222
               

               Conread position:
               321-637
               

               Cow position:
               chr1:33189061-33189393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               234
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               61, 264
               

               Conread position:
               322-655
               

               Cow position:
               chr1:95474937-95474585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 309
               

               Conread position:
               327-656
               

               Cow position:
               chr1:63035579-63035938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               261
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               62, 343
               

               Conread position:
               328-657
               

               Cow position:
               chr1:57574623-57574267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               250
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               333-654
               

               Cow position:
               chr1:91595788-91595440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               69, 217
               

               Conread position:
               334-656
               

               Cow position:
               chr1:23057261-23057587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               117, 90
               

               Conread position:
               340-669
               

               Cow position:
               chr1:24594586-24594936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               40, 283
               

               Conread position:
               342-633
               

               Cow position:
               chr1:58418653-58418969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               49, 111
               

               Conread position:
               342-634
               

               Cow position:
               chr1:90865017-90865332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               348-654
               

               Cow position:
               chr1:77165846-77166155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               78, 13
               

               Conread position:
               365-657
               

               Cow position:
               chr1:29037562-29037859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               6, 54
               

               Conread position:
               366-618
               

               Cow position:
               chr1:20648461-20648720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               5, 53
               

               Conread position:
               366-634
               

               Cow position:
               chr1:7405692-7405967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               5, 53
               

               Conread position:
               366-634
               

               Cow position:
               chr1:18487156-18486881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               204
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               5, 53
               

               Conread position:
               366-634
               

               Cow position:
               chr1:47118978-47119253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               204
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               5, 53
               

               Conread position:
               366-634
               

               Cow position:
               chr1:57505812-57506087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               5, 53
               

               Conread position:
               366-634
               

               Cow position:
               chr1:61340299-61340024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               5, 53
               

               Conread position:
               366-634
               

               Cow position:
               chr1:68145950-68145675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               5, 53
               

               Conread position:
               379-606
               

               Cow position:
               chr1:81766688-81766457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               7, 54
               

               Conread position:
               394-607
               

               Cow position:
               chr1:70388266-70388047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               24, 89
               

               Conread position:
               399-618
               

               Cow position:
               chr1:57645273-57645504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               32, 207
               

               Conread position:
               399-669
               

               Cow position:
               chr1:12803146-12803421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               19, 113
               

               Conread position:
               401-616
               

               Cow position:
               chr1:70381491-70381268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               401-619
               

               Cow position:
               chr1:90605821-90605595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               175
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               401-634
               

               Cow position:
               chr1:8828076-8828317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               401-634
               

               Cow position:
               chr1:102552067-102552313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               401-649
               

               Cow position:
               chr1:70051296-70051550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               24, 147
               

               Conread position:
               401-663
               

               Cow position:
               chr1:25120214-25119954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               199
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               25, 87
               

               Conread position:
               401-665
               

               Cow position:
               chr1:88267079-88266815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               198
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               25, 68
               

               Conread position:
               401-669
               

               Cow position:
               chr1:56424966-56425240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               24, 165
               

               Conread position:
               420-654
               

               Cow position:
               chr1:59014333-59014087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               21, 205
               

               Conread position:
               421-583
               

               Cow position:
               chr1:92035174-92035343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-586
               

               Cow position:
               chr1:67001286-67001458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-595
               

               Cow position:
               chr1:39889215-39889396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-598
               

               Cow position:
               chr1:32564852-32564671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               33, 98
               

               Conread position:
               421-604
               

               Cow position:
               chr1:1023723-1023532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               148
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-607
               

               Cow position:
               chr1:87722611-87722418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-609
               

               Cow position:
               chr1:9261588-9261780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               38, 87
               

               Conread position:
               421-612
               

               Cow position:
               chr1:24440971-24440785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               64, 41
               

               Conread position:
               421-612
               

               Cow position:
               chr1:25053511-25053313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-612
               

               Cow position:
               chr1:73443775-73443576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               421-613
               

               Cow position:
               chr1:9595863-9595670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               421-618
               

               Cow position:
               chr1:475254-475457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               38, 151
               

               Conread position:
               421-618
               

               Cow position:
               chr1:7711859-7712060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               38, 115
               

               Conread position:
               421-618
               

               Cow position:
               chr1:9263029-9262826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 201
               

               Conread position:
               421-618
               

               Cow position:
               chr1:13405309-13405105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-618
               

               Cow position:
               chr1:20831958-20832162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               421-618
               

               Cow position:
               chr1:31351690-31351486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-618
               

               Cow position:
               chr1:48811118-48810914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-618
               

               Cow position:
               chr1:61331886-61331683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               38, 133
               

               Conread position:
               421-618
               

               Cow position:
               chr1:63341396-63341192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               421-618
               

               Cow position:
               chr1:78587382-78587178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-618
               

               Cow position:
               chr1:85807534-85807334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-618
               

               Cow position:
               chr1:89793029-89793233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-619
               

               Cow position:
               chr1:29428673-29428880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:2006615-2006399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 50
               

               Conread position:
               421-634
               

               Cow position:
               chr1:7324147-7324367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:11289313-11289093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:14240983-14240771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               38, 59
               

               Conread position:
               421-634
               

               Cow position:
               chr1:17436598-17436379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 82
               

               Conread position:
               421-634
               

               Cow position:
               chr1:18087505-18087725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:19236421-19236201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:19776015-19775795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:20527236-20527456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               169
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:21134031-21133811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:28520727-28520947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:28812166-28811946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:30103501-30103281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:30371981-30372201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:31106317-31106097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:38478381-38478601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               173
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:38711788-38712008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               32, 150
               

               Conread position:
               421-634
               

               Cow position:
               chr1:48249791-48250011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:52067703-52067923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:52355596-52355376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:54472338-54472118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:54933004-54933224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:55044186-55043966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               169
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:55493988-55493768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:55779948-55780167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:56170036-56170256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:56205734-56205514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:58192726-58192510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               64, 95
               

               Conread position:
               421-634
               

               Cow position:
               chr1:58356657-58356437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:59483787-59483567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:60251350-60251130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:67005956-67006174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               37, 117
               

               Conread position:
               421-634
               

               Cow position:
               chr1:67832060-67831840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:68610693-68610476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               38, 78
               

               Conread position:
               421-634
               

               Cow position:
               chr1:69671545-69671325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:73565402-73565182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:75402972-75403190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:76872958-76873178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:80565001-80564781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               421-634
               

               Cow position:
               chr1:83169517-83169738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               41, 0
               
UCSC Genome Browser
               Conread position:
               421-634
               

               Cow position:
               chr1:85630412-85630632 (view  custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               38, 0
               
UCSC Genome Browser
               
               
               
Conread position: 421-634

               
               
               
Cow position: chr1:86593228-86593008 (view  custom track)

               
               
               
Alignm length: 221

               
               
               
Alignm identity: 167

               
               
               
Alignm E-value: 5e-39

               
               
               
Alignm gaps (pig, cow): 36, 0
UCSC Genome Browser
               
               
               
Conread position: 421-634

               
               
               
Cow position: chr1:88178934-88179154 (view  custom track)

               
               
               
Alignm length: 221

               
               
               
Alignm identity: 168

               
               
               
Alignm E-value: 5e-40

               
               
               
Alignm gaps (pig, cow): 38, 0

               
               
               Conread position:421-634
               
               
               Cow position:chr1:89090460-89090241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:421-634
               
               
               Cow position:chr1:89431479-89431699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:421-634
               
               
               Cow position:chr1:91105118-91105338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:421-634
               
               
               Cow position:chr1:91673308-91673528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:421-634
               
               
               Cow position:chr1:98354319-98354099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:421-634
               
               
               Cow position:chr1:99916516-99916735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 117

               
               
               Conread position:421-647
               
               
               Cow position:chr1:51883691-51883927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:421-652
               
               
               Cow position:chr1:16838393-16838631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:421-655
               
               
               Cow position:chr1:21576625-21576859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:421-655
               
               
               Cow position:chr1:72812237-72812476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 162

               
               
               Conread position:421-656
               
               
               Cow position:chr1:40483202-40482972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:421-657
               
               
               Cow position:chr1:22012886-22012642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):37, 192

               
               
               Conread position:421-657
               
               
               Cow position:chr1:88984372-88984133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:421-657
               
               
               Cow position:chr1:102322025-102321798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:422-613
               
               
               Cow position:chr1:89767519-89767330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:422-634
               
               
               Cow position:chr1:26537109-26536890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:424-613
               
               
               Cow position:chr1:101524307-101524116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 105

               
               
               Conread position:424-653
               
               
               Cow position:chr1:22287623-22287849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:424-658
               
               
               Cow position:chr1:56644799-56644563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):32, 202

               
               
               Conread position:424-667
               
               
               Cow position:chr1:57694568-57694321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:424-672
               
               
               Cow position:chr1:77866658-77866891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:428-613
               
               
               Cow position:chr1:3669041-3668845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:428-613
               
               
               Cow position:chr1:21132781-21132593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):31, 132

               
               
               Conread position:428-619
               
               
               Cow position:chr1:61747083-61746887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):31, 109

               
               
               Conread position:428-634
               
               
               Cow position:chr1:79633469-79633256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:428-634
               
               
               Cow position:chr1:101797676-101797885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 140

               
               
               Conread position:428-636
               
               
               Cow position:chr1:18226383-18226167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:428-653
               
               
               Cow position:chr1:86613393-86613618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:428-654
               
               
               Cow position:chr1:23040180-23040406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):57, 174

               
               
               Conread position:428-655
               
               
               Cow position:chr1:73403871-73404097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:428-656
               
               
               Cow position:chr1:97285580-97285337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:428-657
               
               
               Cow position:chr1:31498205-31498439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):58, 94

               
               
               Conread position:428-668
               
               
               Cow position:chr1:20543309-20543556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 239

               
               
               Conread position:428-668
               
               
               Cow position:chr1:21353235-21352988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 230

               
               
               Conread position:428-668
               
               
               Cow position:chr1:33716043-33716289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):29, 227

               
               
               Conread position:428-669
               
               
               Cow position:chr1:12468707-12468463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 207

               
               
               Conread position:428-669
               
               
               Cow position:chr1:21114338-21114093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 178

               
               
               Conread position:428-669
               
               
               Cow position:chr1:53371441-53371686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):31, 178

               
               
               Conread position:428-669
               
               
               Cow position:chr1:57958474-57958234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):31, 136

               
               
               Conread position:428-669
               
               
               Cow position:chr1:98617756-98618003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:428-669
               
               
               Cow position:chr1:99572481-99572236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):31, 147

               
               
               Conread position:428-672
               
               
               Cow position:chr1:2764197-2764449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):22, 164

               
               
               Conread position:428-672
               
               
               Cow position:chr1:30440251-30440488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:429-589
               
               
               Cow position:chr1:63045065-63044898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:429-593
               
               
               Cow position:chr1:57679272-57679102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:429-595
               
               
               Cow position:chr1:48345269-48345442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:429-606
               
               
               Cow position:chr1:29461412-29461598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 175

               
               
               Conread position:429-612
               
               
               Cow position:chr1:17765463-17765653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:429-618
               
               
               Cow position:chr1:9377395-9377199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:429-619
               
               
               Cow position:chr1:57758999-57759196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:429-633
               
               
               Cow position:chr1:38417903-38418116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 202

               
               
               Conread position:429-634
               
               
               Cow position:chr1:13718748-13718541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 151

               
               
               Conread position:429-634
               
               
               Cow position:chr1:28876182-28876393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:168
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:429-634
               
               
               Cow position:chr1:31534936-31535148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:429-634
               
               
               Cow position:chr1:46613208-46613001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 94

               
               
               Conread position:429-634
               
               
               Cow position:chr1:70038157-70037945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:429-634
               
               
               Cow position:chr1:70069750-70069974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:429-634
               
               
               Cow position:chr1:82479069-82479279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 147

               
               
               Conread position:429-637
               
               
               Cow position:chr1:61203469-61203683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:429-654
               
               
               Cow position:chr1:88027912-88028141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:429-655
               
               
               Cow position:chr1:58440209-58439982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:429-657
               
               
               Cow position:chr1:22761120-22761352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 210

               
               
               Conread position:429-657
               
               
               Cow position:chr1:71792008-71792249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:429-670
               
               
               Cow position:chr1:76852499-76852749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:430-608
               
               
               Cow position:chr1:101787849-101787664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:430-653
               
               
               Cow position:chr1:99689848-99690077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 176

               
               
               Conread position:430-657
               
               
               Cow position:chr1:53649736-53649971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:430-668
               
               
               Cow position:chr1:21785572-21785809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:431-587
               
               
               Cow position:chr1:52171722-52171559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:431-598
               
               
               Cow position:chr1:18137343-18137174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:431-609
               
               
               Cow position:chr1:58218191-58218376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:431-609
               
               
               Cow position:chr1:99229973-99229787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:431-612
               
               
               Cow position:chr1:85337963-85338153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:431-613
               
               
               Cow position:chr1:74536611-74536422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:431-619
               
               
               Cow position:chr1:47454891-47454696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:431-634
               
               
               Cow position:chr1:3970178-3969968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:431-634
               
               
               Cow position:chr1:8517984-8517774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:431-634
               
               
               Cow position:chr1:79553582-79553792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:431-652
               
               
               Cow position:chr1:61220522-61220746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 166

               
               
               Conread position:431-654
               
               
               Cow position:chr1:23578718-23578489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 167

               
               
               Conread position:431-654
               
               
               Cow position:chr1:30306203-30305973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:431-654
               
               
               Cow position:chr1:71134982-71135218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 197

               
               
               Conread position:431-655
               
               
               Cow position:chr1:52053907-52054137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:431-655
               
               
               Cow position:chr1:61563123-61563354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:431-656
               
               
               Cow position:chr1:30883567-30883342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:431-656
               
               
               Cow position:chr1:99865005-99865239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:431-668
               
               
               Cow position:chr1:31239142-31238906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):56, 172

               
               
               Conread position:431-668
               
               
               Cow position:chr1:38279654-38279410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 236

               
               
               Conread position:431-669
               
               
               Cow position:chr1:88563825-88563584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:431-672
               
               
               Cow position:chr1:77656635-77656876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:431-672
               
               
               Cow position:chr1:86021262-86021007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:432-612
               
               
               Cow position:chr1:30494655-30494842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:432-672
               
               
               Cow position:chr1:85143137-85142891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 223

               
               
               Conread position:433-612
               
               
               Cow position:chr1:11771701-11771516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 98

               
               
               Conread position:433-619
               
               
               Cow position:chr1:29902100-29901912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):26, 161

               
               
               Conread position:433-655
               
               
               Cow position:chr1:19146078-19145852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 121

               
               
               Conread position:433-662
               
               
               Cow position:chr1:22778796-22778566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 97

               
               
               Conread position:434-636
               
               
               Cow position:chr1:57391756-57391552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):51, 25

               
               
               Conread position:440-634
               
               
               Cow position:chr1:26722567-26722366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:440-634
               
               
               Cow position:chr1:77554902-77554702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):19, 61

               
               
               Conread position:440-669
               
               
               Cow position:chr1:53519760-53519992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:440-672
               
               
               Cow position:chr1:76860927-76860689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:440-672
               
               
               Cow position:chr1:82519027-82518795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 160

               
               
               Conread position:441-669
               
               
               Cow position:chr1:16573813-16573589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:442-634
               
               
               Cow position:chr1:19158360-19158161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:442-634
               
               
               Cow position:chr1:73967609-73967808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:442-634
               
               
               Cow position:chr1:99675236-99675040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:442-655
               
               
               Cow position:chr1:54296046-54295825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:443-653
               
               
               Cow position:chr1:55220415-55220195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:443-654
               
               
               Cow position:chr1:3377728-3377935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 91

               
               
               Conread position:443-654
               
               
               Cow position:chr1:56856937-56857151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 7

               
               
               Conread position:446-612
               
               
               Cow position:chr1:34914614-34914783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 150

               
               
               Conread position:446-660
               
               
               Cow position:chr1:66775543-66775761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:448-634
               
               
               Cow position:chr1:99118587-99118780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:448-672
               
               
               Cow position:chr1:9513266-9513039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 178

               
               
               Conread position:450-609
               
               
               Cow position:chr1:67317814-67317976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:452-655
               
               
               Cow position:chr1:71920181-71920385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:455-609
               
               
               Cow position:chr1:51488395-51488238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:455-655
               
               
               Cow position:chr1:24740736-24740940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 188

               
               
               Conread position:457-634
               
               
               Cow position:chr1:31707596-31707778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:457-654
               
               
               Cow position:chr1:98534711-98534912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 73

               
               
               Conread position:458-634
               
               
               Cow position:chr1:56666215-56666396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:459-618
               
               
               Cow position:chr1:61342586-61342426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:459-634
               
               
               Cow position:chr1:47079064-47078884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:459-655
               
               
               Cow position:chr1:16338113-16337915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:463-657
               
               
               Cow position:chr1:29606929-29606737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:467-618
               
               
               Cow position:chr1:89234908-89234752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:467-634
               
               
               Cow position:chr1:7162684-7162512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:467-634
               
               
               Cow position:chr1:33656061-33655889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:475-669
               
               
               Cow position:chr1:22789538-22789733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:476-669
               
               
               Cow position:chr1:33987691-33987494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:479-651
               
               
               Cow position:chr1:53487619-53487790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:486-618
               
               
               Cow position:chr1:9308871-9308740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 106

               
               
               Conread position:486-618
               
               
               Cow position:chr1:80902288-80902157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:486-619
               
               
               Cow position:chr1:90393608-90393474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:486-634
               
               
               Cow position:chr1:21090612-21090761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:486-634
               
               
               Cow position:chr1:23861562-23861413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:486-634
               
               
               Cow position:chr1:48036446-48036595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:486-634
               
               
               Cow position:chr1:73463112-73463261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:486-634
               
               
               Cow position:chr1:100888360-100888212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):69, 109

               
               
               Conread position:486-634
               
               
               Cow position:chr1:102814620-102814769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:486-657
               
               
               Cow position:chr1:53578204-53578375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):69, 41

               
               
               Conread position:486-667
               
               
               Cow position:chr1:6241126-6240946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):69, 135

               
               
               Conread position:486-669
               
               
               Cow position:chr1:29411063-29410880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 138

               
               
               Conread position:486-669
               
               
               Cow position:chr1:49133026-49132843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):73, 164

               
               
               Conread position:486-672
               
               
               Cow position:chr1:70535318-70535130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 167

               
               
               Conread position:487-656
               
               
               Cow position:chr1:39250291-39250122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 108

               
               
               Conread position:487-657
               
               
               Cow position:chr1:57946092-57946262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:488-634
               
               
               Cow position:chr1:4226144-4226291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:489-653
               
               
               Cow position:chr1:31317324-31317158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:492-672
               
               
               Cow position:chr1:70064269-70064446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:493-657
               
               
               Cow position:chr1:88328325-88328161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:493-672
               
               
               Cow position:chr1:58528426-58528604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):66, 152

               
               
               Conread position:496-634
               
               
               Cow position:chr1:84284257-84284118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:497-654
               
               
               Cow position:chr1:61536553-61536400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):152, 17

               
               
               Conread position:505-634
               
               
               Cow position:chr1:73440132-73440262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:506-657
               
               
               Cow position:chr1:80667383-80667533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:514-672
               
               
               Cow position:chr1:54163903-54163753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:521-669
               
               
               Cow position:chr1:101853918-101853770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 130

               
               
               Conread position:537-672
               
               
               Cow position:chr1:20378398-20378261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 0
Show alignments to all cow chromosomes.
Conread position:	7-400
Cow position:	chr1:85143807-85143415 (view UCSC Genome Browser custom track)
Alignm length:	403
Alignm identity:	266
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	115, 62
Conread position:	13-400
Cow position:	chr1:76850153-76849751 (view UCSC Genome Browser custom track)
Alignm length:	404
Alignm identity:	244
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	103, 312
Conread position:	37-414
Cow position:	chr1:9263459-9263062 (view UCSC Genome Browser custom track)
Alignm length:	400
Alignm identity:	282
Alignm E-value:	0
Alignm gaps (pig, cow):	31, 217
Conread position:	60-613
Cow position:	chr1:58088874-58088280 (view UCSC Genome Browser custom track)
Alignm length:	603
Alignm identity:	410
Alignm E-value:	0
Alignm gaps (pig, cow):	27, 269
Conread position:	62-403
Cow position:	chr1:16118173-16118508 (view UCSC Genome Browser custom track)
Alignm length:	354
Alignm identity:	248
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	9, 68
Conread position:	62-414
Cow position:	chr1:82921479-82921106 (view UCSC Genome Browser custom track)
Alignm length:	376
Alignm identity:	264
Alignm E-value:	2.94273e-44
Alignm gaps (pig, cow):	9, 132
Conread position:	62-566
Cow position:	chr1:72184192-72183650 (view UCSC Genome Browser custom track)
Alignm length:	553
Alignm identity:	387
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 164
Conread position:	62-634
Cow position:	chr1:94662349-94662949 (view UCSC Genome Browser custom track)
Alignm length:	613
Alignm identity:	430
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 73
Conread position:	64-329
Cow position:	chr1:13437789-13437505 (view UCSC Genome Browser custom track)
Alignm length:	287
Alignm identity:	200
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	23, 199
Conread position:	64-408
Cow position:	chr1:52356594-52356231 (view UCSC Genome Browser custom track)
Alignm length:	366
Alignm identity:	267
Alignm E-value:	0
Alignm gaps (pig, cow):	23, 189
Conread position:	64-634
Cow position:	chr1:18963053-18962435 (view UCSC Genome Browser custom track)
Alignm length:	624
Alignm identity:	437
Alignm E-value:	0
Alignm gaps (pig, cow):	23, 202
Conread position:	64-657
Cow position:	chr1:72113682-72114270 (view UCSC Genome Browser custom track)
Alignm length:	614
Alignm identity:	419
Alignm E-value:	0
Alignm gaps (pig, cow):	88, 56
Conread position:	66-397
Cow position:	chr1:61537321-61536969 (view UCSC Genome Browser custom track)
Alignm length:	355
Alignm identity:	260
Alignm E-value:	0
Alignm gaps (pig, cow):	21, 76
Conread position:	66-400
Cow position:	chr1:44949951-44950297 (view UCSC Genome Browser custom track)
Alignm length:	356
Alignm identity:	243
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	21, 41
Conread position:	66-414
Cow position:	chr1:9261181-9261555 (view UCSC Genome Browser custom track)
Alignm length:	376
Alignm identity:	270
Alignm E-value:	0
Alignm gaps (pig, cow):	21, 272
Conread position:	66-618
Cow position:	chr1:40057792-40058385 (view UCSC Genome Browser custom track)
Alignm length:	608
Alignm identity:	426
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 187
Conread position:	66-634
Cow position:	chr1:71560066-71559448 (view UCSC Genome Browser custom track)
Alignm length:	621
Alignm identity:	445
Alignm E-value:	0
Alignm gaps (pig, cow):	21, 185
Conread position:	66-657
Cow position:	chr1:31363421-31362794 (view UCSC Genome Browser custom track)
Alignm length:	637
Alignm identity:	445
Alignm E-value:	0
Alignm gaps (pig, cow):	20, 187
Conread position:	67-399
Cow position:	chr1:30649498-30649154 (view UCSC Genome Browser custom track)
Alignm length:	353
Alignm identity:	233
Alignm E-value:	8e-23
Alignm gaps (pig, cow):	22, 91
Conread position:	67-400
Cow position:	chr1:28676766-28677100 (view UCSC Genome Browser custom track)
Alignm length:	349
Alignm identity:	238
Alignm E-value:	6e-31
Alignm gaps (pig, cow):	19, 87