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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8003A18.5
        

               
Conread position:
               
59-409
               

               
Cow position:
               
chr21:49648169-49647800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
47, 110
               

               
Conread position:
               
60-660
               

               
Cow position:
               
chr21:25604652-25604037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 190
               

               
Conread position:
               
62-612
               

               
Cow position:
               
chr21:26400968-26400364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 193
               

               
Conread position:
               
63-376
               

               
Cow position:
               
chr21:4586900-4586569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
63-400
               

               
Cow position:
               
chr21:34656756-34657114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 80
               

               
Conread position:
               
63-409
               

               
Cow position:
               
chr21:4566790-4567157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
9, 193
               

               
Conread position:
               
66-567
               

               
Cow position:
               
chr21:46975268-46974739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
9, 156
               

               
Conread position:
               
67-395
               

               
Cow position:
               
chr21:21291664-21291336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 140
               

               
Conread position:
               
67-400
               

               
Cow position:
               
chr21:24948920-24949270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 246
               

               
Conread position:
               
68-386
               

               
Cow position:
               
chr21:219270-219602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
68-619
               

               
Cow position:
               
chr21:13299647-13300235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
68-656
               

               
Cow position:
               
chr21:5631179-5630576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 140
               

               
Conread position:
               
70-351
               

               
Cow position:
               
chr21:8836811-8837105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
70-363
               

               
Cow position:
               
chr21:33663100-33663403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 178
               

               
Conread position:
               
70-414
               

               
Cow position:
               
chr21:5010666-5010302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 262
               

               
Conread position:
               
70-414
               

               
Cow position:
               
chr21:10853073-10853434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 182
               

               
Conread position:
               
70-414
               

               
Cow position:
               
chr21:25189450-25189817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 183
               

               
Conread position:
               
70-592
               

               
Cow position:
               
chr21:44763153-44762581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 176
               

               
Conread position:
               
70-619
               

               
Cow position:
               
chr21:33256363-33256963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 192
               

               
Conread position:
               
70-626
               

               
Cow position:
               
chr21:27286761-27287393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
70-634
               

               
Cow position:
               
chr21:2879019-2878418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
17, 183
               

               
Conread position:
               
70-634
               

               
Cow position:
               
chr21:3781585-3782195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 181
               

               
Conread position:
               
70-654
               

               
Cow position:
               
chr21:4738469-4739079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
70-657
               

               
Cow position:
               
chr21:2769030-2768398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 12
               

               
Conread position:
               
70-657
               

               
Cow position:
               
chr21:13314267-13314895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 247
               

               
Conread position:
               
70-669
               

               
Cow position:
               
chr21:1195346-1195994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 183
               

               
Conread position:
               
70-669
               

               
Cow position:
               
chr21:2665335-2664709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 166
               

               
Conread position:
               
70-669
               

               
Cow position:
               
chr21:31251805-31252443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 245
               

               
Conread position:
               
75-668
               

               
Cow position:
               
chr21:27125910-27125263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 260
               

               
Conread position:
               
76-340
               

               
Cow position:
               
chr21:32397234-32396954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
42, 185
               

               
Conread position:
               
76-347
               

               
Cow position:
               
chr21:4880617-4880332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
53, 172
               

               
Conread position:
               
76-381
               

               
Cow position:
               
chr21:30555282-30554960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 171
               

               
Conread position:
               
76-388
               

               
Cow position:
               
chr21:38026189-38026519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
42, 254
               

               
Conread position:
               
76-392
               

               
Cow position:
               
chr21:3046165-3046477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 22
               

               
Conread position:
               
76-400
               

               
Cow position:
               
chr21:27429303-27428961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
76-400
               

               
Cow position:
               
chr21:47361353-47361013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
40, 129
               

               
Conread position:
               
76-401
               

               
Cow position:
               
chr21:3923078-3923422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 185
               

               
Conread position:
               
76-409
               

               
Cow position:
               
chr21:37151143-37151483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
46, 87
               

               
Conread position:
               
76-413
               

               
Cow position:
               
chr21:42916608-42916962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
76-414
               

               
Cow position:
               
chr21:2513663-2514019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
76-414
               

               
Cow position:
               
chr21:6864735-6864382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
76-414
               

               
Cow position:
               
chr21:6966656-6966303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
76-414
               

               
Cow position:
               
chr21:28916156-28915801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
76-414
               

               
Cow position:
               
chr21:36375804-36376159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 175
               

               
Conread position:
               
76-416
               

               
Cow position:
               
chr21:15398159-15397798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 174
               

               
Conread position:
               
76-613
               

               
Cow position:
               
chr21:33998704-33998116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
76-619
               

               
Cow position:
               
chr21:37374041-37374615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
76-634
               

               
Cow position:
               
chr21:148964-149569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
76-634
               

               
Cow position:
               
chr21:4899148-4898542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
76-634
               

               
Cow position:
               
chr21:11508753-11509363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
76-634
               

               
Cow position:
               
chr21:13112576-13111976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
76-634
               

               
Cow position:
               
chr21:19352046-19351439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 175
               

               
Conread position:
               
76-655
               

               
Cow position:
               
chr21:28056131-28056747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
42, 174
               

               
Conread position:
               
76-655
               

               
Cow position:
               
chr21:28729456-28730079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
42, 173
               

               
Conread position:
               
76-657
               

               
Cow position:
               
chr21:30967127-30966498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 251
               

               
Conread position:
               
77-397
               

               
Cow position:
               
chr21:22750635-22750300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
49, 191
               

               
Conread position:
               
77-409
               

               
Cow position:
               
chr21:36978097-36977748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
46, 255
               

               
Conread position:
               
80-632
               

               
Cow position:
               
chr21:24827312-24826714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 39
               

               
Conread position:
               
83-397
               

               
Cow position:
               
chr21:37355151-37354825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 197
               

               
Conread position:
               
85-386
               

               
Cow position:
               
chr21:17143502-17143821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
17, 167
               

               
Conread position:
               
85-403
               

               
Cow position:
               
chr21:44540-44863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
85-414
               

               
Cow position:
               
chr21:10570110-10570456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
30, 166
               

               
Conread position:
               
85-619
               

               
Cow position:
               
chr21:30596264-30595683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 170
               

               
Conread position:
               
86-657
               

               
Cow position:
               
chr21:4191151-4191739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 155
               

               
Conread position:
               
88-346
               

               
Cow position:
               
chr21:4186775-4187037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 119
               

               
Conread position:
               
88-370
               

               
Cow position:
               
chr21:995609-995322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 70
               

               
Conread position:
               
88-379
               

               
Cow position:
               
chr21:7062841-7062545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
30, 123
               

               
Conread position:
               
88-380
               

               
Cow position:
               
chr21:44532023-44532319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
88-384
               

               
Cow position:
               
chr21:38020059-38020367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 219
               

               
Conread position:
               
88-398
               

               
Cow position:
               
chr21:15548078-15547755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 237
               

               
Conread position:
               
88-400
               

               
Cow position:
               
chr21:1285425-1285100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
64, 243
               

               
Conread position:
               
88-400
               

               
Cow position:
               
chr21:23340851-23340522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
88-400
               

               
Cow position:
               
chr21:24298377-24298052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 113
               

               
Conread position:
               
88-400
               

               
Cow position:
               
chr21:30056878-30056549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
88-402
               

               
Cow position:
               
chr21:47943778-47944111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
30, 230
               

               
Conread position:
               
88-414
               

               
Cow position:
               
chr21:11406054-11405711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
88-414
               

               
Cow position:
               
chr21:27148725-27148382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
88-414
               

               
Cow position:
               
chr21:33317540-33317197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
88-414
               

               
Cow position:
               
chr21:35024207-35024532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 118
               

               
Conread position:
               
88-414
               

               
Cow position:
               
chr21:41796894-41796552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
88-414
               

               
Cow position:
               
chr21:47976836-47977179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
88-415
               

               
Cow position:
               
chr21:34902006-34901668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
88-595
               

               
Cow position:
               
chr21:2523770-2524304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 119
               

               
Conread position:
               
88-609
               

               
Cow position:
               
chr21:79179-78634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 70
               

               
Conread position:
               
88-609
               

               
Cow position:
               
chr21:15247928-15247402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
88-609
               

               
Cow position:
               
chr21:15925010-15925540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 218
               

               
Conread position:
               
88-613
               

               
Cow position:
               
chr21:40268561-40268009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 93
               

               
Conread position:
               
88-618
               

               
Cow position:
               
chr21:27620667-27620094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 167
               

               
Conread position:
               
88-631
               

               
Cow position:
               
chr21:2538322-2537738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
33, 191
               

               
Conread position:
               
88-633
               

               
Cow position:
               
chr21:21941723-21941136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
88-634
               

               
Cow position:
               
chr21:28258499-28259091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 167
               

               
Conread position:
               
88-634
               

               
Cow position:
               
chr21:31513442-31512848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 106
               

               
Conread position:
               
88-634
               

               
Cow position:
               
chr21:39428229-39428824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 162
               

               
Conread position:
               
88-637
               

               
Cow position:
               
chr21:22943643-22944233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 161
               

               
Conread position:
               
88-649
               

               
Cow position:
               
chr21:5019972-5020583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 163
               

               
Conread position:
               
88-654
               

               
Cow position:
               
chr21:24083525-24082916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 158
               

               
Conread position:
               
88-672
               

               
Cow position:
               
chr21:21026330-21026933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
88-672
               

               
Cow position:
               
chr21:23549407-23548805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
88-672
               

               
Cow position:
               
chr21:26699837-26699209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 162
               

               
Conread position:
               
89-373
               

               
Cow position:
               
chr21:20912110-20911819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
89-400
               

               
Cow position:
               
chr21:29254366-29254043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 158
               

               
Conread position:
               
89-409
               

               
Cow position:
               
chr21:12803240-12802922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 181
               

               
Conread position:
               
89-414
               

               
Cow position:
               
chr21:27066772-27066430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 162
               

               
Conread position:
               
89-612
               

               
Cow position:
               
chr21:22854749-22855313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 239
               

               
Conread position:
               
89-667
               

               
Cow position:
               
chr21:1766697-1766060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 102
               

               
Conread position:
               
90-393
               

               
Cow position:
               
chr21:4717766-4718075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 32
               

               
Conread position:
               
90-400
               

               
Cow position:
               
chr21:40082378-40082692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
90-414
               

               
Cow position:
               
chr21:48530004-48530337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
28, 161
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr21:4078876-4079212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 152
               

               
Conread position:
               
93-654
               

               
Cow position:
               
chr21:30857792-30858406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 167
               

               
Conread position:
               
94-374
               

               
Cow position:
               
chr21:27262101-27262392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
98-609
               

               
Cow position:
               
chr21:3172537-3173047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
8, 51
               

               
Conread position:
               
109-634
               

               
Cow position:
               
chr21:26634370-26633808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 60
               

               
Conread position:
               
115-347
               

               
Cow position:
               
chr21:14984950-14984703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
8, 129
               

               
Conread position:
               
117-662
               

               
Cow position:
               
chr21:35390284-35389703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 125
               

               
Conread position:
               
119-414
               

               
Cow position:
               
chr21:39470904-39470596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 128
               

               
Conread position:
               
119-672
               

               
Cow position:
               
chr21:3252514-3253082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
33, 198
               

               
Conread position:
               
122-414
               

               
Cow position:
               
chr21:7048318-7048013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
46, 125
               

               
Conread position:
               
125-397
               

               
Cow position:
               
chr21:28025792-28026068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 159
               

               
Conread position:
               
129-655
               

               
Cow position:
               
chr21:22463059-22463634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 201
               

               
Conread position:
               
130-634
               

               
Cow position:
               
chr21:4813466-4812916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
130-661
               

               
Cow position:
               
chr21:13162316-13162881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
132-656
               

               
Cow position:
               
chr21:20578504-20577944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 152
               

               
Conread position:
               
136-633
               

               
Cow position:
               
chr21:27608816-27608281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 33
               

               
Conread position:
               
140-409
               

               
Cow position:
               
chr21:32203123-32203405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
140-652
               

               
Cow position:
               
chr21:35576720-35576163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 346
               

               
Conread position:
               
142-414
               

               
Cow position:
               
chr21:26757845-26757560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
12, 105
               

               
Conread position:
               
143-654
               

               
Cow position:
               
chr21:48292459-48291911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 93
               

               
Conread position:
               
167-652
               

               
Cow position:
               
chr21:21918410-21918932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 131
               

               
Conread position:
               
169-400
               

               
Cow position:
               
chr21:12325009-12325236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
104, 32
               

               
Conread position:
               
173-364
               

               
Cow position:
               
chr21:32300029-32300229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 150
               

               
Conread position:
               
174-414
               

               
Cow position:
               
chr21:48274277-48274028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 69
               

               
Conread position:
               
174-655
               

               
Cow position:
               
chr21:9895288-9895805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 69
               

               
Conread position:
               
175-394
               

               
Cow position:
               
chr21:18979724-18979955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 147
               

               
Conread position:
               
193-412
               

               
Cow position:
               
chr21:7155340-7155563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
193-416
               

               
Cow position:
               
chr21:34181148-34180925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
194-385
               

               
Cow position:
               
chr21:26208-26019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
194-409
               

               
Cow position:
               
chr21:25814442-25814230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
197-612
               

               
Cow position:
               
chr21:4266570-4266133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
203, 83
               

               
Conread position:
               
198-402
               

               
Cow position:
               
chr21:27032180-27032377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
198-666
               

               
Cow position:
               
chr21:17060963-17060496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
200-387
               

               
Cow position:
               
chr21:26615931-26615743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
66, 113
               

               
Conread position:
               
201-414
               

               
Cow position:
               
chr21:4733571-4733360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
201-656
               

               
Cow position:
               
chr21:16899250-16899734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
210-370
               

               
Cow position:
               
chr21:17948238-17948398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 24
               

               
Conread position:
               
210-403
               

               
Cow position:
               
chr21:6622791-6622984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
210-409
               

               
Cow position:
               
chr21:33358286-33358093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
210-413
               

               
Cow position:
               
chr21:18284771-18284979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
210-414
               

               
Cow position:
               
chr21:3804814-3804611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
210-634
               

               
Cow position:
               
chr21:26830248-26830693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
210-669
               

               
Cow position:
               
chr21:27375094-27375562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 28
               

               
Conread position:
               
210-671
               

               
Cow position:
               
chr21:4097566-4098032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
211-612
               

               
Cow position:
               
chr21:4721640-4722056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
212-409
               

               
Cow position:
               
chr21:29212499-29212697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
212-414
               

               
Cow position:
               
chr21:2555633-2555431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
215-409
               

               
Cow position:
               
chr21:32533786-32533986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
217-597
               

               
Cow position:
               
chr21:30162233-30161828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
224-414
               

               
Cow position:
               
chr21:5642857-5642667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
228-414
               

               
Cow position:
               
chr21:30654558-30654744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
240-672
               

               
Cow position:
               
chr21:4283533-4283095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
241-510
               

               
Cow position:
               
chr21:44639582-44639287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
150, 69
               

               
Conread position:
               
243-400
               

               
Cow position:
               
chr21:27522898-27522742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
250-662
               

               
Cow position:
               
chr21:27343395-27342948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 63
               

               
Conread position:
               
252-414
               

               
Cow position:
               
chr21:27625326-27625158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 66
               

               
Conread position:
               
254-634
               

               
Cow position:
               
chr21:45790124-45790528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
128, 59
               

               
Conread position:
               
255-414
               

               
Cow position:
               
chr21:38907197-38907354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
258-662
               

               
Cow position:
               
chr21:33306996-33307414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
259-652
               

               
Cow position:
               
chr21:30193546-30193119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
264-637
               

               
Cow position:
               
chr21:37353587-37353223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
82, 49
               

               
Conread position:
               
268-400
               

               
Cow position:
               
chr21:44862542-44862411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
119, 43
               

               
Conread position:
               
269-400
               

               
Cow position:
               
chr21:30777064-30777194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
270-546
               

               
Cow position:
               
chr21:470085-470350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
183, 40
               

               
Conread position:
               
271-634
               

               
Cow position:
               
chr21:12152857-12153247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
120, 40
               

               
Conread position:
               
274-672
               

               
Cow position:
               
chr21:23501628-23501215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 47
               

               
Conread position:
               
280-654
               

               
Cow position:
               
chr21:33420940-33420529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
296-584
               

               
Cow position:
               
chr21:48895566-48895863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
304-618
               

               
Cow position:
               
chr21:33710441-33710094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
6, 315
               

               
Conread position:
               
315-653
               

               
Cow position:
               
chr21:2935792-2935432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 8
               

               
Conread position:
               
333-633
               

               
Cow position:
               
chr21:10042453-10042785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
380-634
               

               
Cow position:
               
chr21:4036099-4035840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 8
               

               
Conread position:
               
389-672
               

               
Cow position:
               
chr21:27262861-27263146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
390-609
               

               
Cow position:
               
chr21:5595971-5596199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
46, 38
               

               
Conread position:
               
390-634
               

               
Cow position:
               
chr21:31974304-31974559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
38, 137
               

               
Conread position:
               
392-609
               

               
Cow position:
               
chr21:21427104-21427322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
399-651
               

               
Cow position:
               
chr21:44805390-44805128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
44, 195
               

               
Conread position:
               
401-619
               

               
Cow position:
               
chr21:30564935-30565161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
401-634
               

               
Cow position:
               
chr21:10570468-10570709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
401-634
               

               
Cow position:
               
chr21:10853446-10853687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
401-634
               

               
Cow position:
               
chr21:25189829-25190073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
401-656
               

               
Cow position:
               
chr21:3804599-3804336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
412-655
               

               
Cow position:
               
chr21:15546490-15546245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 150
               

               
Conread position:
               
420-609
               

               
Cow position:
               
chr21:38907386-38907579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-607
               

               
Cow position:
               
chr21:7062400-7062207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-607
               

               
Cow position:
               
chr21:30654777-30654964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
421-613
               

               
Cow position:
               
chr21:47428545-47428744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-619
               

               
Cow position:
               
chr21:48530370-48530575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
421-626
               

               
Cow position:
               
chr21:27066397-27066185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-633
               

               
Cow position:
               
chr21:33317164-33316945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:449371-449590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:5642634-5642417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
38, 184
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:6966270-6966050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:14533815-14534035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:17143891-17144110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:26757527-26757301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:30297680-30297901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:32237541-32237761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:34180895-34180675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:34823378-34823598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:34900472-34900252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:36376192-36376412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:36535006-36534786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:37923389-37923607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
36, 210
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:41796519-41796299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:42916996-42917215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:47977469-47977689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-634
               

               
Cow position:
               
chr21:48273995-48273775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
421-657
               

               
Cow position:
               
chr21:2419403-2419642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 134
               

               
Conread position:
               
421-657
               

               
Cow position:
               
chr21:32534041-32534271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
421-660
               

               
Cow position:
               
chr21:49647761-49647521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
421-668
               

               
Cow position:
               
chr21:2514053-2514306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
38, 245
               

               
Conread position:
               
421-669
               

               
Cow position:
               
chr21:4559866-4559614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
58, 167
               

               
Conread position:
               
421-669
               

               
Cow position:
               
chr21:4586476-4586223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
421-669
               

               
Cow position:
               
chr21:39417279-39417532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
38, 227
               

               
Conread position:
               
421-672
               

               
Cow position:
               
chr21:43404235-43403978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 245
               

               
Conread position:
               
422-657
               

               
Cow position:
               
chr21:18285013-18285251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
424-662
               

               
Cow position:
               
chr21:219691-219936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 195
               

               
Conread position:
               
428-619
               

               
Cow position:
               
chr21:23802221-23802024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
428-634
               

               
Cow position:
               
chr21:28476597-28476385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
428-647
               

               
Cow position:
               
chr21:1685969-1685750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
428-653
               

               
Cow position:
               
chr21:15274554-15274783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
428-655
               

               
Cow position:
               
chr21:19098659-19098891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
31, 199
               

               
Conread position:
               
428-655
               

               
Cow position:
               
chr21:22719886-22719655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 188
               

               
Conread position:
               
428-666
               

               
Cow position:
               
chr21:39078038-39077796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
428-672
               

               
Cow position:
               
chr21:44218884-44219138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
31, 232
               

               
Conread position:
               
429-605
               

               
Cow position:
               
chr21:32203452-32203633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
429-613
               

               
Cow position:
               
chr21:28915759-28915574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
429-618
               

               
Cow position:
               
chr21:32396810-32396618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 90
               

               
Conread position:
               
429-619
               

               
Cow position:
               
chr21:16890632-16890431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
429-634
               

               
Cow position:
               
chr21:6864341-6864138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
429-637
               

               
Cow position:
               
chr21:5010258-5010045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 145
               

               
Conread position:
               
429-637
               

               
Cow position:
               
chr21:7047972-7047757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
30, 151
               

               
Conread position:
               
429-659
               

               
Cow position:
               
chr21:47944170-47944407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 163
               

               
Conread position:
               
429-668
               

               
Cow position:
               
chr21:31275557-31275798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
429-668
               

               
Cow position:
               
chr21:34255372-34255124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 228
               

               
Conread position:
               
430-633
               

               
Cow position:
               
chr21:49655972-49655762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
430-654
               

               
Cow position:
               
chr21:649467-649236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 101
               

               
Conread position:
               
430-661
               

               
Cow position:
               
chr21:3046551-3046784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 159
               

               
Conread position:
               
431-608
               

               
Cow position:
               
chr21:24949327-24949505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
431-613
               

               
Cow position:
               
chr21:27428904-27428715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
431-652
               

               
Cow position:
               
chr21:42460840-42460617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
431-655
               

               
Cow position:
               
chr21:25156514-25156739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
48, 168
               

               
Conread position:
               
432-655
               

               
Cow position:
               
chr21:33984061-33983832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
433-651
               

               
Cow position:
               
chr21:18824454-18824231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
433-655
               

               
Cow position:
               
chr21:2905575-2905349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 172
               

               
Conread position:
               
433-671
               

               
Cow position:
               
chr21:26615657-26615426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
434-634
               

               
Cow position:
               
chr21:25597888-25598095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
434-634
               

               
Cow position:
               
chr21:34072364-34072161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
434-634
               

               
Cow position:
               
chr21:36506623-36506416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
439-669
               

               
Cow position:
               
chr21:18792227-18791984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 226
               

               
Conread position:
               
440-668
               

               
Cow position:
               
chr21:48262037-48262271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 226
               

               
Conread position:
               
441-620
               

               
Cow position:
               
chr21:21623501-21623685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 180
               

               
Conread position:
               
441-655
               

               
Cow position:
               
chr21:45782501-45782282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
441-660
               

               
Cow position:
               
chr21:25475336-25475561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
442-631
               

               
Cow position:
               
chr21:25290906-25291097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 167
               

               
Conread position:
               
445-634
               

               
Cow position:
               
chr21:38866386-38866190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
446-612
               

               
Cow position:
               
chr21:27032684-27032845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
450-609
               

               
Cow position:
               
chr21:26737925-26737762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 139
               

               
Conread position:
               
450-655
               

               
Cow position:
               
chr21:28597825-28598034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 199
               

               
Conread position:
               
455-651
               

               
Cow position:
               
chr21:46291617-46291818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
456-613
               

               
Cow position:
               
chr21:13437368-13437530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
456-616
               

               
Cow position:
               
chr21:39093980-39094144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 139
               

               
Conread position:
               
456-634
               

               
Cow position:
               
chr21:26874832-26875014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
456-655
               

               
Cow position:
               
chr21:4188775-4188979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
459-612
               

               
Cow position:
               
chr21:22097647-22097804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
461-672
               

               
Cow position:
               
chr21:37323550-37323345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
472-654
               

               
Cow position:
               
chr21:29665713-29665528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
486-612
               

               
Cow position:
               
chr21:36710883-36711006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
91, 8
               

               
Conread position:
               
486-618
               

               
Cow position:
               
chr21:13735886-13735755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
69, 96
               

               
Conread position:
               
486-618
               

               
Cow position:
               
chr21:23340924-23341057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
486-634
               

               
Cow position:
               
chr21:19627434-19627286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
486-655
               

               
Cow position:
               
chr21:30354132-30354302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
486-657
               

               
Cow position:
               
chr21:25986690-25986861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 63
               

               
Conread position:
               
486-657
               

               
Cow position:
               
chr21:33965446-33965274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
486-669
               

               
Cow position:
               
chr21:37123143-37122958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 175
               

               
Conread position:
               
487-655
               

               
Cow position:
               
chr21:20911152-20910982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
488-657
               

               
Cow position:
               
chr21:20244325-20244155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
505-672
               

               
Cow position:
               
chr21:44293001-44292833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
54, 156
               

               
Conread position:
               
514-672
               

               
Cow position:
               
chr21:8419358-8419510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 125
               

               
Conread position:
               
524-656
               

               
Cow position:
               
chr21:37344341-37344211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
534-672
               

               
Cow position:
               
chr21:32573300-32573438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
541-672
               

               
Cow position:
               
chr21:39763549-39763681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               
Show alignments to all cow chromosomes.