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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8003H20.3
        

               
Conread position:
               
1-100
               

               
Cow position:
               
chr28:1550743-1550842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr28:17576572-17576458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-115
               

               
Cow position:
               
chr28:31842039-31841922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr28:4057341-4057460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr28:22354223-22354342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr28:7981060-7980935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-127
               

               
Cow position:
               
chr28:13290535-13290401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chr28:16387217-16387349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr28:11079056-11079191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr28:9099299-9099438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
83, 132
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr28:24674363-24674508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr28:8935369-8935536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
83, 126
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr28:8972615-8972787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr28:20251626-20251799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr28:23801142-23801320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr28:33031875-33032067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 56
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr28:10616307-10616101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr28:9126546-9126336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr28:22359200-22359409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 95
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr28:17599080-17598865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
104, 79
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr28:29806554-29806347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
90, 125
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr28:9647383-9647173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 194
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr28:20518547-20518768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
87, 174
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr28:23254144-23253944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr28:15965696-15965491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr28:18559078-18558873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr28:25128340-25128124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr28:28779220-28779438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
125, 152
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr28:8290378-8290609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 202
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr28:1316147-1315914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 99
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr28:7009358-7009140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
127, 29
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr28:15600907-15601147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
88, 140
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr28:17316507-17316750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr28:30967110-30967352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 154
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr28:31987261-31987489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
129, 42
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr28:2864601-2864364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr28:5434093-5433847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
83, 145
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr28:10674348-10674580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
213, 82
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr28:10611929-10611683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 134
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr28:11356285-11356025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr28:7372608-7372356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr28:27503955-27503708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
129, 210
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr28:5371265-5371002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
125, 95
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr28:11924177-11923908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
27, 186
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr28:3740495-3740755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 208
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr28:16925569-16925298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr28:3479908-3480191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr28:8372114-8372393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 276
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr28:22279541-22279274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
43, 164
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr28:13371533-13371248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 213
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr28:31142321-31142041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
88, 106
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr28:10529822-10529551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
127, 92
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr28:20760280-20759987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 59
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr28:21129480-21129188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 160
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr28:3245986-3246279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
128, 36
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr28:1213906-1213586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr28:34150892-34150564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr28:8682208-8681878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
90, 187
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr28:12942035-12942342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
254, 80
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr28:15375179-15374855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 99
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr28:30842229-30842530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
240, 83
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr28:23530507-23530839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 169
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr28:5335616-5335283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr28:11451832-11451492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr28:16215248-16214933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 214
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr28:26268978-26269302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr28:25563721-25564056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 250
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr28:29392645-29392989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 318
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr28:4215013-4215353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
94, 82
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr28:10879417-10879742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
86, 188
               

               
Conread position:
               
1-330
               

               
Cow position:
               
chr28:15712905-15713240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
27, 152
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr28:31972109-31971769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
87, 139
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr28:16364327-16363981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr28:21354867-21355211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 236
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr28:22322908-22323253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 341
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr28:3770027-3769685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
80, 194
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr28:22171086-22170726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr28:10900464-10900820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
88, 30
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr28:1199093-1199451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 343
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr28:30561107-30561465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 343
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr28:30977929-30978276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
90, 58
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr28:2422607-2422977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 281
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr28:3000968-3000553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 126
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr28:3256444-3256855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 125
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr28:4587739-4588163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 131
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr28:25070744-25071188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
36, 204
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr28:5826591-5827024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 191
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr28:10744848-10745288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr28:13267424-13267863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 77
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr28:25762674-25763097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 174
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr28:21380524-21380961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 127
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr28:21598610-21598172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 220
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr28:26103376-26103799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
132, 83
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chr28:34133499-34133964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
78, 278
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr28:26614538-26614983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 136
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr28:11585564-11585085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 56
               

               
Conread position:
               
1-458
               

               
Cow position:
               
chr28:18934113-18934571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
117, 46
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr28:7864974-7865449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 124
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr28:14234628-14235073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
1-461
               

               
Cow position:
               
chr28:25727024-25727492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
1-471
               

               
Cow position:
               
chr28:11752502-11752009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 285
               

               
Conread position:
               
1-475
               

               
Cow position:
               
chr28:661757-662241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
1-478
               

               
Cow position:
               
chr28:28163739-28164224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 109
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr28:6971696-6971204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 199
               

               
Conread position:
               
1-497
               

               
Cow position:
               
chr28:8022468-8021946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 175
               

               
Conread position:
               
1-508
               

               
Cow position:
               
chr28:25399533-25400035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
93, 79
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr28:16109596-16110114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 104
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr28:31648720-31649238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
90, 76
               

               
Conread position:
               
1-528
               

               
Cow position:
               
chr28:4139035-4138488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 253
               

               
Conread position:
               
1-541
               

               
Cow position:
               
chr28:21363401-21363932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 159
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr28:1837649-1838189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr28:15272616-15272077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 74
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr28:23616045-23616598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 370
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr28:24671916-24672461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 186
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr28:22308303-22308843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 153
               

               
Conread position:
               
1-550
               

               
Cow position:
               
chr28:12430250-12430807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 115
               

               
Conread position:
               
1-551
               

               
Cow position:
               
chr28:14997707-14998266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 151
               

               
Conread position:
               
1-551
               

               
Cow position:
               
chr28:34443120-34442554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
1-553
               

               
Cow position:
               
chr28:16346873-16346334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 96
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr28:9285720-9285172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 34
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr28:4070608-4071167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 34
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr28:11759894-11759351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 174
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr28:18790655-18791245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 142
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr28:28798650-28798072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
98, 318
               

               
Conread position:
               
1-560
               

               
Cow position:
               
chr28:21844599-21845166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 276
               

               
Conread position:
               
1-561
               

               
Cow position:
               
chr28:10977507-10978053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 241
               

               
Conread position:
               
1-561
               

               
Cow position:
               
chr28:19222502-19221925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 207
               

               
Conread position:
               
1-561
               

               
Cow position:
               
chr28:24966031-24966598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 222
               

               
Conread position:
               
1-563
               

               
Cow position:
               
chr28:5930994-5931557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 17
               

               
Conread position:
               
1-563
               

               
Cow position:
               
chr28:20124432-20124995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 97
               

               
Conread position:
               
1-563
               

               
Cow position:
               
chr28:30293944-30293369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 363
               

               
Conread position:
               
1-590
               

               
Cow position:
               
chr28:28766266-28765664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
1-640
               

               
Cow position:
               
chr28:22332193-22332812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 106
               

               
Conread position:
               
1-650
               

               
Cow position:
               
chr28:20312917-20313588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 165
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr28:14742444-14742657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr28:26452961-26452751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
85, 134
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr28:6484630-6484422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 178
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr28:2993546-2993318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
84, 111
               

               
Conread position:
               
2-239
               

               
Cow position:
               
chr28:7882448-7882698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr28:16475654-16475882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
124, 57
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr28:23111586-23111827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 72
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr28:24737665-24737899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
97, 81
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr28:6577303-6577556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
121, 73
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr28:22304502-22304775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
125, 23
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr28:16388295-16388559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr28:4046791-4047085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 122
               

               
Conread position:
               
2-321
               

               
Cow position:
               
chr28:5553275-5552972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
89, 7
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chr28:23480617-23480279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr28:7503482-7503855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
90, 10
               

               
Conread position:
               
2-391
               

               
Cow position:
               
chr28:5904380-5904780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 191
               

               
Conread position:
               
2-405
               

               
Cow position:
               
chr28:30303543-30303137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 63
               

               
Conread position:
               
2-409
               

               
Cow position:
               
chr28:9426698-9426281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 177
               

               
Conread position:
               
2-426
               

               
Cow position:
               
chr28:21672457-21672878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
2-476
               

               
Cow position:
               
chr28:11426892-11426410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 73
               

               
Conread position:
               
2-542
               

               
Cow position:
               
chr28:4282848-4282296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 266
               

               
Conread position:
               
2-551
               

               
Cow position:
               
chr28:16084971-16085532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 5
               

               
Conread position:
               
2-555
               

               
Cow position:
               
chr28:21868095-21868663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 474
               

               
Conread position:
               
2-559
               

               
Cow position:
               
chr28:5817496-5818050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
2-568
               

               
Cow position:
               
chr28:8347366-8347956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 215
               

               
Conread position:
               
3-117
               

               
Cow position:
               
chr28:17625759-17625645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr28:790047-789919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
3-131
               

               
Cow position:
               
chr28:13536576-13536707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr28:32174300-32174468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
88, 110
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr28:32824004-32824180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr28:12342723-12342540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr28:10886231-10886048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr28:24694224-24694416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-191
               

               
Cow position:
               
chr28:22344351-22344542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr28:7443704-7443900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr28:28724117-28724322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 130
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr28:3802840-3803040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
71, 78
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr28:22164619-22164826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
127, 177
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr28:7946111-7945897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr28:22582681-22582895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr28:23114638-23114424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr28:27754855-27755069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr28:34655984-34656200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr28:28934063-28933846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 130
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr28:4058372-4058592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr28:16365156-16364931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
85, 154
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chr28:22269999-22270225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 114
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr28:8911575-8911328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
74, 172
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr28:19300941-19301178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr28:7485533-7485286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr28:16246620-16246370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 94
               

               
Conread position:
               
3-254
               

               
Cow position:
               
chr28:30250026-30250289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr28:9182768-9183039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr28:2615924-2615649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-266
               

               
Cow position:
               
chr28:10870989-10871264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr28:22329960-22330242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 91
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr28:3161438-3161138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
40, 264
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr28:5771012-5771315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 26
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr28:10193135-10192826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-301
               

               
Cow position:
               
chr28:19515747-19515438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr28:10563294-10563604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 119
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr28:14675152-14675463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
83, 179
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr28:16598047-16598362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr28:16182248-16182561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
83, 190
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr28:7209225-7208916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
85, 138
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr28:14433975-14434291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:4582884-4583200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:5071515-5071198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:12117340-12117022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:19186123-19186440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:21491526-21491209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:24592410-24592727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 273
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:24606166-24605853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
137, 119
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:24993387-24993704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr28:34243607-34243924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr28:5805164-5805470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 181
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr28:17738433-17738115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 41
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr28:10478680-10478376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr28:23839857-23840169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 80
               

               
Conread position:
               
3-320
               

               
Cow position:
               
chr28:6960141-6960469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
86, 319
               

               
Conread position:
               
3-320
               

               
Cow position:
               
chr28:23312671-23312342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr28:17287875-17288189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 13
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:1261905-1262237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:1943397-1943063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:7336878-7337209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 97
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:11281057-11280725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:15605423-15605755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:18096622-18096952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
81, 158
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:20966762-20966430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:21893877-21893549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:23309436-23309104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:23685938-23686270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:29222387-29222060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 174
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr28:34731631-34731963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 276
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr28:2814853-2814532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
88, 52
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr28:4957599-4957269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
99, 77
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:332348-332687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:3891878-3892216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:7794514-7794174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:7830464-7830803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
81, 334
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:7888185-7887847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
81, 299
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:9710254-9709915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:10934514-10934175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:15998620-15998282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
83, 54
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:22319005-22318666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:27478667-27479004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 105
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr28:32362413-32362740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr28:10512789-10513124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
81, 214
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr28:11547434-11547110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
86, 125
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr28:30210055-30209716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr28:3882050-3881708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
86, 322
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr28:12457801-12458146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
81, 317
               

               
Conread position:
               
3-344
               

               
Cow position:
               
chr28:15616450-15616803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-344
               

               
Cow position:
               
chr28:29044269-29044620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:800637-800281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
83, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:882867-882511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
83, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:3627975-3628329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
83, 323
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:6651081-6650725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:7197207-7196852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 67
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:7715914-7715558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:9267745-9268094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
86, 275
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:12701767-12702123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:13323103-13322747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:14610404-14610760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 337
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:15107680-15107324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:15285899-15285544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 260
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:17687761-17687405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:22083853-22083497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:22577100-22577456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:22735974-22736340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
81, 351
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:23823425-23823068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:25104735-25105091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:25556318-25555970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
79, 133
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:29683137-29683493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr28:34379700-34380056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 341
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr28:481810-481452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chr28:25829295-25829651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 178
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr28:18139811-18139453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
72, 250
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr28:1957263-1957632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 334
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr28:5637951-5638320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 334
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr28:6319263-6318894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
81, 180
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr28:7970839-7970470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 341
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr28:17130960-17130594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
123, 77
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr28:17369949-17370313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
128, 78
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr28:25683309-25682940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 334
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr28:29658845-29658485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
86, 125
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr28:6534897-6534527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr28:10642371-10642010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 266
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr28:23802299-23802663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 214
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr28:32305353-32304980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr28:33689409-33689778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
81, 284
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr28:27938720-27939090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
81, 330
               

               
Conread position:
               
3-369
               

               
Cow position:
               
chr28:2645609-2645985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
79, 332
               

               
Conread position:
               
3-369
               

               
Cow position:
               
chr28:4310889-4311266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
81, 165
               

               
Conread position:
               
3-369
               

               
Cow position:
               
chr28:23720988-23721352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr28:32589599-32589972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-416
               

               
Cow position:
               
chr28:11787061-11786642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 197
               

               
Conread position:
               
3-431
               

               
Cow position:
               
chr28:26922725-26922278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
3-458
               

               
Cow position:
               
chr28:33163812-33163347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr28:5129067-5128605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 70
               

               
Conread position:
               
3-523
               

               
Cow position:
               
chr28:10455885-10455354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
81, 277
               

               
Conread position:
               
3-542
               

               
Cow position:
               
chr28:16919516-16918981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 309
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr28:3024264-3023721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 273
               

               
Conread position:
               
3-549
               

               
Cow position:
               
chr28:7268288-7267749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 158
               

               
Conread position:
               
3-557
               

               
Cow position:
               
chr28:13473952-13474507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 107
               

               
Conread position:
               
3-562
               

               
Cow position:
               
chr28:10868511-10867940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-565
               

               
Cow position:
               
chr28:25056615-25057172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 271
               

               
Conread position:
               
4-239
               

               
Cow position:
               
chr28:23212340-23212094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr28:2222462-2222220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
4-241
               

               
Cow position:
               
chr28:10295837-10296083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
4-310
               

               
Cow position:
               
chr28:30994929-30995237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
95, 77
               

               
Conread position:
               
4-318
               

               
Cow position:
               
chr28:11687379-11687062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 93
               

               
Conread position:
               
4-330
               

               
Cow position:
               
chr28:7724022-7723695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 5
               

               
Conread position:
               
4-487
               

               
Cow position:
               
chr28:7685030-7684560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 53
               

               
Conread position:
               
4-560
               

               
Cow position:
               
chr28:34878324-34877761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
5-352
               

               
Cow position:
               
chr28:34082369-34082016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
7-235
               

               
Cow position:
               
chr28:757610-757380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
119, 73
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr28:10589380-10589095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 161
               

               
Conread position:
               
7-360
               

               
Cow position:
               
chr28:7936544-7936906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
7-412
               

               
Cow position:
               
chr28:10682173-10681754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 161
               

               
Conread position:
               
7-416
               

               
Cow position:
               
chr28:10534285-10533860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 71
               

               
Conread position:
               
7-451
               

               
Cow position:
               
chr28:34561008-34561453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
7-464
               

               
Cow position:
               
chr28:29199376-29199854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 36
               

               
Conread position:
               
7-465
               

               
Cow position:
               
chr28:3914359-3914842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 474
               

               
Conread position:
               
7-540
               

               
Cow position:
               
chr28:11527605-11527068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 177
               

               
Conread position:
               
7-542
               

               
Cow position:
               
chr28:5684353-5684893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 292
               

               
Conread position:
               
7-542
               

               
Cow position:
               
chr28:8787199-8787732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
7-543
               

               
Cow position:
               
chr28:3745852-3746391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 103
               

               
Conread position:
               
7-548
               

               
Cow position:
               
chr28:30327435-30326902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 187
               

               
Conread position:
               
7-563
               

               
Cow position:
               
chr28:12964227-12964794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
8-137
               

               
Cow position:
               
chr28:6090811-6090944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 69
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr28:5054376-5054124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
8-310
               

               
Cow position:
               
chr28:25826213-25825910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 96
               

               
Conread position:
               
9-149
               

               
Cow position:
               
chr28:1883213-1883071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
9-171
               

               
Cow position:
               
chr28:25476463-25476631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
9-172
               

               
Cow position:
               
chr28:2842226-2842391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
53, 159
               

               
Conread position:
               
9-197
               

               
Cow position:
               
chr28:15258781-15258593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 116
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr28:28185453-28185645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 82
               

               
Conread position:
               
9-206
               

               
Cow position:
               
chr28:16003717-16003919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
9-209
               

               
Cow position:
               
chr28:12406281-12406088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
9-210
               

               
Cow position:
               
chr28:20772379-20772580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
9-212
               

               
Cow position:
               
chr28:2512720-2512512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
9-212
               

               
Cow position:
               
chr28:6472880-6473076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
77, 127
               

               
Conread position:
               
9-215
               

               
Cow position:
               
chr28:23281566-23281358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
9-238
               

               
Cow position:
               
chr28:4458524-4458749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 34
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr28:13356931-13356700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 188
               

               
Conread position:
               
9-244
               

               
Cow position:
               
chr28:527157-527393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
9-245
               

               
Cow position:
               
chr28:25334671-25334918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
9-246
               

               
Cow position:
               
chr28:3011769-3011531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
80, 98
               

               
Conread position:
               
9-250
               

               
Cow position:
               
chr28:5825747-5825990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
70, 120
               

               
Conread position:
               
9-260
               

               
Cow position:
               
chr28:12980902-12980634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chr28:25693906-25693637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 23
               

               
Conread position:
               
9-268
               

               
Cow position:
               
chr28:28340948-28341216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 108
               

               
Conread position:
               
9-294
               

               
Cow position:
               
chr28:28213894-28214191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
9-299
               

               
Cow position:
               
chr28:25805332-25805621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
121, 80
               

               
Conread position:
               
9-301
               

               
Cow position:
               
chr28:10772975-10773264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
9-308
               

               
Cow position:
               
chr28:33466472-33466786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 119
               

               
Conread position:
               
9-309
               

               
Cow position:
               
chr28:6775982-6775669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
9-314
               

               
Cow position:
               
chr28:14493193-14493504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 37
               

               
Conread position:
               
9-321
               

               
Cow position:
               
chr28:2280017-2279696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 258
               

               
Conread position:
               
9-322
               

               
Cow position:
               
chr28:32300715-32300389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
75, 249
               

               
Conread position:
               
9-323
               

               
Cow position:
               
chr28:23231414-23231093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
82, 146
               

               
Conread position:
               
9-327
               

               
Cow position:
               
chr28:13693400-13693726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 168
               

               
Conread position:
               
9-328
               

               
Cow position:
               
chr28:28098381-28098711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
75, 119
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr28:2949193-2949524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
78, 222
               

               
Conread position:
               
9-340
               

               
Cow position:
               
chr28:19295711-19295369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
9-348
               

               
Cow position:
               
chr28:15408790-15408440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 335
               

               
Conread position:
               
9-364
               

               
Cow position:
               
chr28:9851287-9851634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
307, 116
               

               
Conread position:
               
9-540
               

               
Cow position:
               
chr28:14657348-14657907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
9-550
               

               
Cow position:
               
chr28:3144236-3143673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 415
               

               
Conread position:
               
9-559
               

               
Cow position:
               
chr28:25806248-25806807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 84
               

               
Conread position:
               
9-561
               

               
Cow position:
               
chr28:14150889-14151440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 75
               

               
Conread position:
               
9-563
               

               
Cow position:
               
chr28:21104193-21103606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 138
               

               
Conread position:
               
10-124
               

               
Cow position:
               
chr28:30389797-30389680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-138
               

               
Cow position:
               
chr28:5145066-5144934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
10-170
               

               
Cow position:
               
chr28:5110704-5110539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-181
               

               
Cow position:
               
chr28:1096016-1096186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
116, 72
               

               
Conread position:
               
10-188
               

               
Cow position:
               
chr28:19194413-19194597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-206
               

               
Cow position:
               
chr28:10463954-10463753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 137
               

               
Conread position:
               
10-209
               

               
Cow position:
               
chr28:6047698-6047902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
10-209
               

               
Cow position:
               
chr28:10473860-10474064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
10-209
               

               
Cow position:
               
chr28:18516238-18516033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-212
               

               
Cow position:
               
chr28:30532091-30531884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-215
               

               
Cow position:
               
chr28:3097708-3097919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 183
               

               
Conread position:
               
10-215
               

               
Cow position:
               
chr28:10867562-10867771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
76, 174
               

               
Conread position:
               
10-221
               

               
Cow position:
               
chr28:12593287-12593502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chr28:2132323-2132099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 136
               

               
Conread position:
               
10-240
               

               
Cow position:
               
chr28:19358562-19358317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
10-268
               

               
Cow position:
               
chr28:22254285-22254024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
10-273
               

               
Cow position:
               
chr28:32785317-32785047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr28:5311443-5311165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
10-297
               

               
Cow position:
               
chr28:10577965-10577669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
79, 269
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr28:5747799-5747502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
79, 183
               

               
Conread position:
               
10-305
               

               
Cow position:
               
chr28:29824092-29824399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-307
               

               
Cow position:
               
chr28:1508787-1509095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
79, 50
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:1811089-1810786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 20
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:3187637-3187327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:5212243-5212553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:7005935-7006253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:7745988-7746305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 130
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:9848675-9848367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:11733473-11733163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:11931734-11931424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:17392472-17392782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:17663042-17662732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:20934492-20934185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
79, 37
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr28:29035744-29035435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
10-321
               

               
Cow position:
               
chr28:25701208-25700902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
10-322
               

               
Cow position:
               
chr28:28356879-28356554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
74, 123
               

               
Conread position:
               
10-331
               

               
Cow position:
               
chr28:12049061-12048726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
81, 252
               

               
Conread position:
               
10-331
               

               
Cow position:
               
chr28:26781735-26782067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 312
               

               
Conread position:
               
10-337
               

               
Cow position:
               
chr28:4022034-4022372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
10-337
               

               
Cow position:
               
chr28:14113332-14113670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
76, 327
               

               
Conread position:
               
10-349
               

               
Cow position:
               
chr28:1575598-1575248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 334
               

               
Conread position:
               
10-349
               

               
Cow position:
               
chr28:3750970-3751309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 261
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr28:786564-786929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr28:5270536-5270901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr28:12651255-12651619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
81, 98
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr28:24603832-24604188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
10-369
               

               
Cow position:
               
chr28:21767244-21766873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 367
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr28:2089148-2089571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
79, 328
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr28:5361363-5360941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
79, 167
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr28:5941394-5941818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr28:11505364-11504944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
72, 309
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr28:26419094-26418671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
81, 166
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr28:26727760-26727347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 118
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr28:27684054-27683628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
79, 329
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr28:30098783-30099206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
78, 259
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr28:5792354-5792781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 184
               

               
Conread position:
               
10-541
               

               
Cow position:
               
chr28:33884062-33884594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
10-559
               

               
Cow position:
               
chr28:22132578-22133118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 229
               

               
Conread position:
               
11-210
               

               
Cow position:
               
chr28:11857176-11857384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
75, 177
               

               
Conread position:
               
11-244
               

               
Cow position:
               
chr28:31404155-31403919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
90, 104
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr28:20538504-20538808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
78, 30
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chr28:28116529-28116834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
11-331
               

               
Cow position:
               
chr28:16406739-16407072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 148
               

               
Conread position:
               
11-337
               

               
Cow position:
               
chr28:15916620-15916284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
78, 315
               

               
Conread position:
               
12-189
               

               
Cow position:
               
chr28:11025419-11025238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 112
               

               
Conread position:
               
12-209
               

               
Cow position:
               
chr28:10325066-10324866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 115
               

               
Conread position:
               
12-210
               

               
Cow position:
               
chr28:26627820-26627622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 31
               

               
Conread position:
               
12-240
               

               
Cow position:
               
chr28:10514451-10514203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
12-268
               

               
Cow position:
               
chr28:22208873-22208605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
12-285
               

               
Cow position:
               
chr28:16441044-16441317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 153
               

               
Conread position:
               
12-301
               

               
Cow position:
               
chr28:13889598-13889899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
12-360
               

               
Cow position:
               
chr28:25411527-25411887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 332
               

               
Conread position:
               
12-390
               

               
Cow position:
               
chr28:18717471-18717083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 96
               

               
Conread position:
               
12-412
               

               
Cow position:
               
chr28:14933616-14934029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 352
               

               
Conread position:
               
13-559
               

               
Cow position:
               
chr28:20409037-20409599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
124, 101
               

               
Conread position:
               
14-208
               

               
Cow position:
               
chr28:16415811-16416007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
14-240
               

               
Cow position:
               
chr28:11690549-11690307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
14-240
               

               
Cow position:
               
chr28:12938659-12938889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
74, 8
               

               
Conread position:
               
14-321
               

               
Cow position:
               
chr28:17030053-17029750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 62
               

               
Conread position:
               
14-411
               

               
Cow position:
               
chr28:12946601-12947019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
75, 49
               

               
Conread position:
               
14-412
               

               
Cow position:
               
chr28:33234742-33235154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 274
               

               
Conread position:
               
17-215
               

               
Cow position:
               
chr28:29942811-29943005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 162
               

               
Conread position:
               
17-563
               

               
Cow position:
               
chr28:10606952-10606424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
212, 14
               

               
Conread position:
               
18-240
               

               
Cow position:
               
chr28:1884886-1885120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
18-240
               

               
Cow position:
               
chr28:17762318-17762551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 166
               

               
Conread position:
               
20-169
               

               
Cow position:
               
chr28:10775741-10775895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
20-289
               

               
Cow position:
               
chr28:31223932-31223659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
71, 170
               

               
Conread position:
               
20-409
               

               
Cow position:
               
chr28:7549400-7548989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 225
               

               
Conread position:
               
20-429
               

               
Cow position:
               
chr28:26151687-26152103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
108, 54
               

               
Conread position:
               
20-444
               

               
Cow position:
               
chr28:18590935-18591373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
20-555
               

               
Cow position:
               
chr28:2961156-2960610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 40
               

               
Conread position:
               
22-163
               

               
Cow position:
               
chr28:7608276-7608134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
104, 58
               

               
Conread position:
               
22-208
               

               
Cow position:
               
chr28:19340674-19340491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 67
               

               
Conread position:
               
22-210
               

               
Cow position:
               
chr28:24994515-24994708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 111
               

               
Conread position:
               
22-239
               

               
Cow position:
               
chr28:7697332-7697115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
104, 68
               

               
Conread position:
               
22-240
               

               
Cow position:
               
chr28:3462827-3463045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
22-337
               

               
Cow position:
               
chr28:10762338-10762645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
22-444
               

               
Cow position:
               
chr28:23675812-23676241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 51
               

               
Conread position:
               
23-330
               

               
Cow position:
               
chr28:17638199-17637890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
23-546
               

               
Cow position:
               
chr28:16211432-16210905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 256
               

               
Conread position:
               
23-557
               

               
Cow position:
               
chr28:5203870-5204393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 58
               

               
Conread position:
               
23-563
               

               
Cow position:
               
chr28:7698312-7697763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 61
               

               
Conread position:
               
24-316
               

               
Cow position:
               
chr28:7590517-7590216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
24-320
               

               
Cow position:
               
chr28:6486264-6486563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
67, 79
               

               
Conread position:
               
24-360
               

               
Cow position:
               
chr28:33697779-33698128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
60, 115
               

               
Conread position:
               
25-213
               

               
Cow position:
               
chr28:15528215-15528032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
105, 69
               

               
Conread position:
               
25-243
               

               
Cow position:
               
chr28:19564926-19564699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
26-170
               

               
Cow position:
               
chr28:10980808-10980957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
27-312
               

               
Cow position:
               
chr28:4188199-4188490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 25
               

               
Conread position:
               
27-559
               

               
Cow position:
               
chr28:22372006-22371460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
28-209
               

               
Cow position:
               
chr28:3427191-3427008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
28-330
               

               
Cow position:
               
chr28:23489818-23489505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
30-240
               

               
Cow position:
               
chr28:18180464-18180247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
31-233
               

               
Cow position:
               
chr28:34123171-34122975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 32
               

               
Conread position:
               
31-301
               

               
Cow position:
               
chr28:34626707-34626988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 266
               

               
Conread position:
               
31-308
               

               
Cow position:
               
chr28:34598248-34598537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
31-429
               

               
Cow position:
               
chr28:4536144-4536547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
31-562
               

               
Cow position:
               
chr28:22500813-22500293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 140
               

               
Conread position:
               
32-315
               

               
Cow position:
               
chr28:4880590-4880304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 208
               

               
Conread position:
               
32-331
               

               
Cow position:
               
chr28:25893156-25892845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
32-338
               

               
Cow position:
               
chr28:16686708-16687009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
32-364
               

               
Cow position:
               
chr28:15590670-15590997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
33-195
               

               
Cow position:
               
chr28:27994993-27995158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
33-209
               

               
Cow position:
               
chr28:13725836-13726017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
33-362
               

               
Cow position:
               
chr28:19222919-19222583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
33-444
               

               
Cow position:
               
chr28:12619240-12619677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 412
               

               
Conread position:
               
35-181
               

               
Cow position:
               
chr28:25768150-25768302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
35-400
               

               
Cow position:
               
chr28:12758830-12758443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
35-528
               

               
Cow position:
               
chr28:7512913-7512402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 423
               

               
Conread position:
               
36-278
               

               
Cow position:
               
chr28:11827164-11827420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
48, 103
               

               
Conread position:
               
36-400
               

               
Cow position:
               
chr28:7751622-7751244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
37-328
               

               
Cow position:
               
chr28:22040349-22040044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
38-172
               

               
Cow position:
               
chr28:3202819-3202956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
38-563
               

               
Cow position:
               
chr28:4308218-4307677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 105
               

               
Conread position:
               
39-276
               

               
Cow position:
               
chr28:5366464-5366203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 123
               

               
Conread position:
               
39-319
               

               
Cow position:
               
chr28:26684796-26685082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
46, 97
               

               
Conread position:
               
39-331
               

               
Cow position:
               
chr28:2124120-2124410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
39-331
               

               
Cow position:
               
chr28:16401578-16401880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
39-348
               

               
Cow position:
               
chr28:12260172-12259852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
47, 305
               

               
Conread position:
               
39-348
               

               
Cow position:
               
chr28:30284097-30283777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
47, 305
               

               
Conread position:
               
40-318
               

               
Cow position:
               
chr28:10888345-10888631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
49, 238
               

               
Conread position:
               
41-348
               

               
Cow position:
               
chr28:7059967-7060285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
45, 303
               

               
Conread position:
               
43-245
               

               
Cow position:
               
chr28:16622698-16622905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
46, 114
               

               
Conread position:
               
44-308
               

               
Cow position:
               
chr28:9276830-9277105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
44-331
               

               
Cow position:
               
chr28:15007848-15008142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
44-361
               

               
Cow position:
               
chr28:16770278-16770596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
45, 89
               

               
Conread position:
               
46-247
               

               
Cow position:
               
chr28:8740293-8740500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
98, 38
               

               
Conread position:
               
46-458
               

               
Cow position:
               
chr28:24343060-24343483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
47-207
               

               
Cow position:
               
chr28:22358236-22358399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
48-211
               

               
Cow position:
               
chr28:17613052-17613220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
48-548
               

               
Cow position:
               
chr28:28792163-28792679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 175
               

               
Conread position:
               
49-330
               

               
Cow position:
               
chr28:34579729-34579435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
49-348
               

               
Cow position:
               
chr28:34581424-34581113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
50-261
               

               
Cow position:
               
chr28:7013896-7013675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 99
               

               
Conread position:
               
50-537
               

               
Cow position:
               
chr28:6059775-6059272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
76, 33
               

               
Conread position:
               
51-281
               

               
Cow position:
               
chr28:16879572-16879342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 114
               

               
Conread position:
               
51-308
               

               
Cow position:
               
chr28:34008260-34007985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
51-314
               

               
Cow position:
               
chr28:10456825-10456570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
82, 63
               

               
Conread position:
               
51-352
               

               
Cow position:
               
chr28:8111300-8111610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
51-542
               

               
Cow position:
               
chr28:2800939-2801420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
75, 194
               

               
Conread position:
               
51-559
               

               
Cow position:
               
chr28:10669267-10669802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
38, 407
               

               
Conread position:
               
55-358
               

               
Cow position:
               
chr28:9822270-9821970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
56-234
               

               
Cow position:
               
chr28:5405185-5405362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
56-276
               

               
Cow position:
               
chr28:10303615-10303843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 193
               

               
Conread position:
               
56-348
               

               
Cow position:
               
chr28:8066481-8066784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
30, 288
               

               
Conread position:
               
56-563
               

               
Cow position:
               
chr28:1383550-1383055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 36
               

               
Conread position:
               
57-305
               

               
Cow position:
               
chr28:5768892-5769154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 154
               

               
Conread position:
               
57-358
               

               
Cow position:
               
chr28:16250345-16250043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 129
               

               
Conread position:
               
59-348
               

               
Cow position:
               
chr28:19173832-19173533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
59-464
               

               
Cow position:
               
chr28:23008027-23007607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 139
               

               
Conread position:
               
61-306
               

               
Cow position:
               
chr28:6546687-6546427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
62-344
               

               
Cow position:
               
chr28:16350336-16350066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
66, 137
               

               
Conread position:
               
62-431
               

               
Cow position:
               
chr28:15044152-15043772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 103
               

               
Conread position:
               
63-348
               

               
Cow position:
               
chr28:1172968-1172672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
23, 281
               

               
Conread position:
               
63-348
               

               
Cow position:
               
chr28:16857707-16857411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
22, 281
               

               
Conread position:
               
64-318
               

               
Cow position:
               
chr28:9390659-9390398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 187
               

               
Conread position:
               
68-229
               

               
Cow position:
               
chr28:5837822-5837991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
68-361
               

               
Cow position:
               
chr28:29455942-29455642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
68-487
               

               
Cow position:
               
chr28:31110295-31109857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 299
               

               
Conread position:
               
69-262
               

               
Cow position:
               
chr28:26723390-26723587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 142
               

               
Conread position:
               
69-273
               

               
Cow position:
               
chr28:16450980-16450781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
69-299
               

               
Cow position:
               
chr28:22351202-22351438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
20, 163
               

               
Conread position:
               
69-308
               

               
Cow position:
               
chr28:34852492-34852743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
69-363
               

               
Cow position:
               
chr28:8963238-8963541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
70-348
               

               
Cow position:
               
chr28:13412118-13411829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
16, 256
               

               
Conread position:
               
71-240
               

               
Cow position:
               
chr28:31872034-31871860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
20, 93
               

               
Conread position:
               
71-331
               

               
Cow position:
               
chr28:7606947-7607213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
71-337
               

               
Cow position:
               
chr28:27428469-27428731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
74-316
               

               
Cow position:
               
chr28:7328625-7328860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
59, 19
               

               
Conread position:
               
74-444
               

               
Cow position:
               
chr28:7228664-7228287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 56
               

               
Conread position:
               
76-331
               

               
Cow position:
               
chr28:26784750-26784483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
80-360
               

               
Cow position:
               
chr28:97403-97114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
47, 261
               

               
Conread position:
               
83-545
               

               
Cow position:
               
chr28:7144518-7144996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
84-240
               

               
Cow position:
               
chr28:29953116-29952958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 24
               

               
Conread position:
               
84-243
               

               
Cow position:
               
chr28:8103660-8103496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
84-308
               

               
Cow position:
               
chr28:11505742-11505975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr28:28471984-28472232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
84-348
               

               
Cow position:
               
chr28:26599561-26599826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
130, 45
               

               
Conread position:
               
84-348
               

               
Cow position:
               
chr28:30900165-30899891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 259
               

               
Conread position:
               
84-360
               

               
Cow position:
               
chr28:32275073-32275358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 257
               

               
Conread position:
               
84-361
               

               
Cow position:
               
chr28:15063610-15063321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 191
               

               
Conread position:
               
84-414
               

               
Cow position:
               
chr28:15263995-15263645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
84-540
               

               
Cow position:
               
chr28:26743351-26743822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 120
               

               
Conread position:
               
85-276
               

               
Cow position:
               
chr28:2819488-2819690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
89-542
               

               
Cow position:
               
chr28:34229963-34230424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 224
               

               
Conread position:
               
91-331
               

               
Cow position:
               
chr28:13786896-13787145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
92-321
               

               
Cow position:
               
chr28:28414407-28414644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
93-245
               

               
Cow position:
               
chr28:28590477-28590632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
93-319
               

               
Cow position:
               
chr28:5773380-5773604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
93-321
               

               
Cow position:
               
chr28:4841659-4841428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
93-323
               

               
Cow position:
               
chr28:4889018-4888778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
93-330
               

               
Cow position:
               
chr28:13865583-13865822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
93-451
               

               
Cow position:
               
chr28:13176941-13176579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 161
               

               
Conread position:
               
93-458
               

               
Cow position:
               
chr28:26719098-26719460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 59
               

               
Conread position:
               
93-485
               

               
Cow position:
               
chr28:29434687-29434282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 163
               

               
Conread position:
               
93-506
               

               
Cow position:
               
chr28:19026265-19025838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 91
               

               
Conread position:
               
93-561
               

               
Cow position:
               
chr28:29416979-29416515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
93-586
               

               
Cow position:
               
chr28:23793563-23793088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 159
               

               
Conread position:
               
94-227
               

               
Cow position:
               
chr28:1537444-1537581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
94-253
               

               
Cow position:
               
chr28:31415688-31415526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
94-307
               

               
Cow position:
               
chr28:15688780-15688996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 122
               

               
Conread position:
               
94-320
               

               
Cow position:
               
chr28:11380304-11380073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
39, 182
               

               
Conread position:
               
94-322
               

               
Cow position:
               
chr28:24887117-24887355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
94-330
               

               
Cow position:
               
chr28:8084436-8084679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
94-364
               

               
Cow position:
               
chr28:16244020-16243746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
35, 175
               

               
Conread position:
               
94-498
               

               
Cow position:
               
chr28:3408478-3408061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
34, 221
               

               
Conread position:
               
95-288
               

               
Cow position:
               
chr28:23468156-23468352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 84
               

               
Conread position:
               
95-348
               

               
Cow position:
               
chr28:1237104-1236843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 230
               

               
Conread position:
               
95-348
               

               
Cow position:
               
chr28:32265843-32265581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 247
               

               
Conread position:
               
95-360
               

               
Cow position:
               
chr28:6326601-6326874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
36, 184
               

               
Conread position:
               
95-444
               

               
Cow position:
               
chr28:10172674-10172314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 168
               

               
Conread position:
               
95-557
               

               
Cow position:
               
chr28:3493044-3492579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 281
               

               
Conread position:
               
96-321
               

               
Cow position:
               
chr28:16253114-16252890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
144, 30
               

               
Conread position:
               
96-338
               

               
Cow position:
               
chr28:25424562-25424314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
8, 143
               

               
Conread position:
               
96-412
               

               
Cow position:
               
chr28:26533283-26533614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
96-452
               

               
Cow position:
               
chr28:23621289-23621645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
35, 165
               

               
Conread position:
               
96-542
               

               
Cow position:
               
chr28:23459879-23460337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
27, 227
               

               
Conread position:
               
96-542
               

               
Cow position:
               
chr28:24996848-24996425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
96-557
               

               
Cow position:
               
chr28:4016276-4016731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 27
               

               
Conread position:
               
96-559
               

               
Cow position:
               
chr28:1099901-1099465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 118
               

               
Conread position:
               
96-559
               

               
Cow position:
               
chr28:16204589-16204117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 34
               

               
Conread position:
               
97-336
               

               
Cow position:
               
chr28:6861695-6861940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
97-423
               

               
Cow position:
               
chr28:21502137-21502475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 182
               

               
Conread position:
               
98-328
               

               
Cow position:
               
chr28:30608438-30608213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 151
               

               
Conread position:
               
98-542
               

               
Cow position:
               
chr28:16370332-16369896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 191
               

               
Conread position:
               
98-558
               

               
Cow position:
               
chr28:23410581-23410125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 126
               

               
Conread position:
               
99-240
               

               
Cow position:
               
chr28:32813255-32813111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
99-348
               

               
Cow position:
               
chr28:12961565-12961822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 242
               

               
Conread position:
               
100-210
               

               
Cow position:
               
chr28:11665946-11665838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
100-331
               

               
Cow position:
               
chr28:9177009-9176773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 160
               

               
Conread position:
               
100-450
               

               
Cow position:
               
chr28:2862606-2862977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 216
               

               
Conread position:
               
100-450
               

               
Cow position:
               
chr28:21873517-21873868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
34, 134
               

               
Conread position:
               
100-464
               

               
Cow position:
               
chr28:33051765-33052160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 387
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr28:4057732-4057975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
102-473
               

               
Cow position:
               
chr28:25596379-25596760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 170
               

               
Conread position:
               
102-556
               

               
Cow position:
               
chr28:31841590-31841137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
27, 7
               

               
Conread position:
               
102-559
               

               
Cow position:
               
chr28:27218067-27218537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 331
               

               
Conread position:
               
103-241
               

               
Cow position:
               
chr28:12934014-12933872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
103-321
               

               
Cow position:
               
chr28:16386758-16386537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
103-328
               

               
Cow position:
               
chr28:13242076-13241850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
103-344
               

               
Cow position:
               
chr28:8348905-8348661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 6
               

               
Conread position:
               
103-433
               

               
Cow position:
               
chr28:3078930-3078590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 102
               

               
Conread position:
               
103-560
               

               
Cow position:
               
chr28:4938586-4939003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 95
               

               
Conread position:
               
103-563
               

               
Cow position:
               
chr28:5236852-5236377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
104-246
               

               
Cow position:
               
chr28:13936165-13936311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
104-337
               

               
Cow position:
               
chr28:23775793-23776032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
7, 165
               

               
Conread position:
               
104-486
               

               
Cow position:
               
chr28:19080099-19079702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
104-521
               

               
Cow position:
               
chr28:22345768-22346197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
105-346
               

               
Cow position:
               
chr28:2905330-2905578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
28, 166
               

               
Conread position:
               
105-364
               

               
Cow position:
               
chr28:28076654-28076398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
135, 20
               

               
Conread position:
               
105-478
               

               
Cow position:
               
chr28:22321172-22321557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 336
               

               
Conread position:
               
105-570
               

               
Cow position:
               
chr28:8408486-8408979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 64
               

               
Conread position:
               
106-322
               

               
Cow position:
               
chr28:9108201-9108417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
106-322
               

               
Cow position:
               
chr28:34636429-34636640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
106-374
               

               
Cow position:
               
chr28:24646291-24646571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
27, 171
               

               
Conread position:
               
106-524
               

               
Cow position:
               
chr28:2898746-2899173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 216
               

               
Conread position:
               
108-253
               

               
Cow position:
               
chr28:22583385-22583534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
109-215
               

               
Cow position:
               
chr28:10280801-10280905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
109-268
               

               
Cow position:
               
chr28:7723642-7723474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
110-480
               

               
Cow position:
               
chr28:14649102-14649482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 288
               

               
Conread position:
               
111-327
               

               
Cow position:
               
chr28:13902203-13901992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
112-563
               

               
Cow position:
               
chr28:11423047-11422608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
115-338
               

               
Cow position:
               
chr28:4914342-4914105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
115-562
               

               
Cow position:
               
chr28:26220021-26220493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
116-310
               

               
Cow position:
               
chr28:25498743-25498547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
17, 134
               

               
Conread position:
               
116-571
               

               
Cow position:
               
chr28:9636696-9636232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 159
               

               
Conread position:
               
118-344
               

               
Cow position:
               
chr28:5658317-5658545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
119-542
               

               
Cow position:
               
chr28:12951198-12951609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
126, 80
               

               
Conread position:
               
120-313
               

               
Cow position:
               
chr28:33036701-33036510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
15, 64
               

               
Conread position:
               
121-542
               

               
Cow position:
               
chr28:26340102-26340527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 154
               

               
Conread position:
               
126-298
               

               
Cow position:
               
chr28:17362806-17362642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
126-329
               

               
Cow position:
               
chr28:3077765-3077966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr28:8656963-8656762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
126-361
               

               
Cow position:
               
chr28:10212925-10212699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
193, 47
               

               
Conread position:
               
126-481
               

               
Cow position:
               
chr28:11884750-11884381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
126-540
               

               
Cow position:
               
chr28:34430654-34430232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
86, 239
               

               
Conread position:
               
126-556
               

               
Cow position:
               
chr28:750999-751436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
126-559
               

               
Cow position:
               
chr28:9099707-9100140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
26, 144
               

               
Conread position:
               
126-563
               

               
Cow position:
               
chr28:5144750-5144298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
37, 152
               

               
Conread position:
               
127-344
               

               
Cow position:
               
chr28:13447482-13447691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
113, 69
               

               
Conread position:
               
132-243
               

               
Cow position:
               
chr28:2888208-2888316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
132-560
               

               
Cow position:
               
chr28:18625001-18625445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
69, 250
               

               
Conread position:
               
133-321
               

               
Cow position:
               
chr28:5188622-5188434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 86
               

               
Conread position:
               
134-249
               

               
Cow position:
               
chr28:8628996-8628879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
134-322
               

               
Cow position:
               
chr28:7980638-7980450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
134-542
               

               
Cow position:
               
chr28:5074724-5074328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
139, 62
               

               
Conread position:
               
135-400
               

               
Cow position:
               
chr28:2738030-2737749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
77, 138
               

               
Conread position:
               
138-444
               

               
Cow position:
               
chr28:24017788-24018087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
139-568
               

               
Cow position:
               
chr28:11818175-11817722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 111
               

               
Conread position:
               
144-421
               

               
Cow position:
               
chr28:25282995-25283274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
57, 29
               

               
Conread position:
               
144-564
               

               
Cow position:
               
chr28:4884476-4884035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
68, 137
               

               
Conread position:
               
144-573
               

               
Cow position:
               
chr28:5437301-5436862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
70, 284
               

               
Conread position:
               
149-559
               

               
Cow position:
               
chr28:4090249-4089848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 65
               

               
Conread position:
               
154-349
               

               
Cow position:
               
chr28:8935734-8935933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 150
               

               
Conread position:
               
155-563
               

               
Cow position:
               
chr28:4158753-4159178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
155-563
               

               
Cow position:
               
chr28:10844920-10845319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 117
               

               
Conread position:
               
156-444
               

               
Cow position:
               
chr28:4809596-4809882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
56, 106
               

               
Conread position:
               
159-560
               

               
Cow position:
               
chr28:4881440-4881033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 315
               

               
Conread position:
               
161-563
               

               
Cow position:
               
chr28:4835038-4834630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
162-551
               

               
Cow position:
               
chr28:26982938-26982534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 212
               

               
Conread position:
               
164-331
               

               
Cow position:
               
chr28:118245-118070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
166-390
               

               
Cow position:
               
chr28:23724643-23724415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
167-559
               

               
Cow position:
               
chr28:11829129-11828749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
168-542
               

               
Cow position:
               
chr28:6091174-6091549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 113
               

               
Conread position:
               
168-563
               

               
Cow position:
               
chr28:11866855-11866453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 106
               

               
Conread position:
               
169-539
               

               
Cow position:
               
chr28:13290319-13289967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 125
               

               
Conread position:
               
176-481
               

               
Cow position:
               
chr28:2132100-2131786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
176-549
               

               
Cow position:
               
chr28:657625-657265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
22, 107
               

               
Conread position:
               
178-354
               

               
Cow position:
               
chr28:26264628-26264812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
179-541
               

               
Cow position:
               
chr28:4643939-4643578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
183-346
               

               
Cow position:
               
chr28:10202313-10202477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
142, 102
               

               
Conread position:
               
189-559
               

               
Cow position:
               
chr28:5199664-5200038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
130, 48
               

               
Conread position:
               
195-565
               

               
Cow position:
               
chr28:24082114-24082485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
197-557
               

               
Cow position:
               
chr28:29989267-29988900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
76, 70
               

               
Conread position:
               
199-443
               

               
Cow position:
               
chr28:2872765-2873020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
119, 93
               

               
Conread position:
               
200-416
               

               
Cow position:
               
chr28:30746879-30746655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
117, 106
               

               
Conread position:
               
211-542
               

               
Cow position:
               
chr28:27161470-27161123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
213-542
               

               
Cow position:
               
chr28:19262727-19262391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
27, 216
               

               
Conread position:
               
218-541
               

               
Cow position:
               
chr28:11079174-11079492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
107, 6
               

               
Conread position:
               
219-563
               

               
Cow position:
               
chr28:8140350-8140700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
103, 252
               

               
Conread position:
               
220-563
               

               
Cow position:
               
chr28:3449168-3449525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 231
               

               
Conread position:
               
238-559
               

               
Cow position:
               
chr28:5577412-5577742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
88, 119
               

               
Conread position:
               
239-561
               

               
Cow position:
               
chr28:3011385-3011056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
75, 174
               

               
Conread position:
               
265-542
               

               
Cow position:
               
chr28:4181917-4182194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
65, 203
               

               
Conread position:
               
269-563
               

               
Cow position:
               
chr28:7350575-7350864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
54, 191
               

               
Conread position:
               
284-563
               

               
Cow position:
               
chr28:3445549-3445264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
287-559
               

               
Cow position:
               
chr28:4013022-4013292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 177
               

               
Conread position:
               
289-557
               

               
Cow position:
               
chr28:7132138-7131883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
109, 31
               

               
Conread position:
               
297-545
               

               
Cow position:
               
chr28:7557777-7557534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 35
               

               
Conread position:
               
312-563
               

               
Cow position:
               
chr28:5254840-5255085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 149
               

               
Conread position:
               
314-541
               

               
Cow position:
               
chr28:26531308-26531089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
315-557
               

               
Cow position:
               
chr28:17739797-17740033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
84, 57
               

               
Conread position:
               
327-558
               

               
Cow position:
               
chr28:28501216-28501450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 61
               

               
Conread position:
               
329-487
               

               
Cow position:
               
chr28:7498161-7498001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
329-563
               

               
Cow position:
               
chr28:9705639-9705871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
335-542
               

               
Cow position:
               
chr28:4045841-4046037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
375-558
               

               
Cow position:
               
chr28:3759022-3759208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
399-542
               

               
Cow position:
               
chr28:4077288-4077144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 54
               
Show alignments to all cow chromosomes.