Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8003L14.3 |
| Conread position: | 133-408 |
| Cow position: | chr14:3156168-3156443 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 133-410 |
| Cow position: | chr14:680997-681274 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 216, 198 |
| Conread position: | 133-457 |
| Cow position: | chr14:3155511-3155835 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 133-490 |
| Cow position: | chr14:3100735-3100378 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 133-661 |
| Cow position: | chr14:3127920-3127391 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 109 |
| Conread position: | 133-713 |
| Cow position: | chr14:447607-448188 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 358 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 134-745 |
| Cow position: | chr14:3101233-3100625 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 367 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 176, 169 |
| Conread position: | 135-780 |
| Cow position: | chr14:25795330-25794684 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 205 |
| Conread position: | 136-536 |
| Cow position: | chr14:25895891-25896291 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 136-540 |
| Cow position: | chr14:3061132-3060728 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 137-530 |
| Cow position: | chr14:3156088-3156481 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 137-545 |
| Cow position: | chr14:3127664-3127255 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 137-741 |
| Cow position: | chr14:3080572-3079967 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 366 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 137-741 |
| Cow position: | chr14:3101314-3100714 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 137-745 |
| Cow position: | chr14:3080824-3080214 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 380 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 137-745 |
| Cow position: | chr14:3128000-3127390 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 137-780 |
| Cow position: | chr14:25795244-25794600 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 199 |
| Conread position: | 138-493 |
| Cow position: | chr14:25877434-25877789 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 138-540 |
| Cow position: | chr14:25877350-25877752 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 138-660 |
| Cow position: | chr14:25860131-25860654 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 138-735 |
| Cow position: | chr14:25783955-25784553 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 138-742 |
| Cow position: | chr14:25783367-25783973 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 138-743 |
| Cow position: | chr14:25836574-25837181 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 138-743 |
| Cow position: | chr14:25876510-25877117 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 138-748 |
| Cow position: | chr14:680666-681278 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 138-755 |
| Cow position: | chr14:25836154-25836772 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 138-774 |
| Cow position: | chr14:3128083-3127446 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 138-778 |
| Cow position: | chr14:25784039-25784680 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 138-779 |
| Cow position: | chr14:25795411-25794769 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 140-653 |
| Cow position: | chr14:25895559-25896073 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 140-709 |
| Cow position: | chr14:25836660-25837231 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 140-743 |
| Cow position: | chr14:25895727-25896332 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 141-547 |
| Cow position: | chr14:25895980-25896385 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 125, 101 |
| Conread position: | 141-741 |
| Cow position: | chr14:25859462-25860064 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 367 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 141-742 |
| Cow position: | chr14:25876933-25877536 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 142-776 |
| Cow position: | chr14:3101058-3100427 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 390 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 145-661 |
| Cow position: | chr14:3080229-3079711 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 328 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 145-768 |
| Cow position: | chr14:680588-681213 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 363 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 279 |
| Conread position: | 149-414 |
| Cow position: | chr14:434095-434361 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 171-745 |
| Cow position: | chr14:3155870-3156446 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 171-745 |
| Cow position: | chr14:25895338-25895914 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 338 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 375, 501 |
| Conread position: | 171-780 |
| Cow position: | chr14:25783904-25784514 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 176-741 |
| Cow position: | chr14:680367-680934 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 5, 390 |
| Conread position: | 179-655 |
| Cow position: | chr14:25784416-25784887 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 303 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 179-730 |
| Cow position: | chr14:25794698-25794147 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 340 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 131, 127 |
| Conread position: | 179-743 |
| Cow position: | chr14:25895262-25895828 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 154, 161 |
| Conread position: | 179-780 |
| Cow position: | chr14:25783744-25784346 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 180-480 |
| Cow position: | chr14:25910980-25911280 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 160, 151 |
| Conread position: | 180-660 |
| Cow position: | chr14:25859837-25860318 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 366, 384 |
| Conread position: | 180-735 |
| Cow position: | chr14:25859333-25859889 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 130, 124 |
| Conread position: | 180-740 |
| Cow position: | chr14:3100938-3100378 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 343 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 170, 88 |
| Conread position: | 180-741 |
| Cow position: | chr14:25859249-25859812 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 335 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 180-742 |
| Cow position: | chr14:25859921-25860485 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 180-743 |
| Cow position: | chr14:25795033-25794468 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 359 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 75, 61 |
| Conread position: | 180-744 |
| Cow position: | chr14:3061424-3060858 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 130, 124 |
| Conread position: | 180-744 |
| Cow position: | chr14:25895179-25895745 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 239, 271 |
| Conread position: | 180-745 |
| Cow position: | chr14:25836112-25836679 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 346 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 175, 148 |
| Conread position: | 180-780 |
| Cow position: | chr14:25795453-25794852 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 358 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 144, 150 |
| Conread position: | 181-776 |
| Cow position: | chr14:3128208-3127612 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 187-697 |
| Cow position: | chr14:25877315-25877826 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 152, 144 |
| Conread position: | 187-743 |
| Cow position: | chr14:25836539-25837097 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 308, 329 |
| Conread position: | 187-768 |
| Cow position: | chr14:3081026-3080444 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 349 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 188-741 |
| Cow position: | chr14:25859173-25859727 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 329 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 235, 227 |
| Conread position: | 190-740 |
| Cow position: | chr14:25910742-25911290 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 315, 48 |
| Conread position: | 192-658 |
| Cow position: | chr14:3100844-3100377 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 194-743 |
| Cow position: | chr14:25894941-25895492 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 338 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 201-741 |
| Cow position: | chr14:25836049-25836590 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 341 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 264-745 |
| Cow position: | chr14:447570-448053 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 83, 62 |
| Conread position: | 276-743 |
| Cow position: | chr14:25836040-25836509 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 282-711 |
| Cow position: | chr14:3155408-3155838 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 44, 57 |
| Conread position: | 299-768 |
| Cow position: | chr14:447521-447991 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 301 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 309-780 |
| Cow position: | chr14:3128164-3127692 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 339-780 |
| Cow position: | chr14:25783316-25783758 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 65 |
| Conread position: | 348-769 |
| Cow position: | chr14:3101438-3101018 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 71, 62 |
| Conread position: | 351-745 |
| Cow position: | chr14:3155393-3155789 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 415-779 |
| Cow position: | chr14:3101457-3101091 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 9, 85 |
Show alignments to all cow chromosomes.