Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8003L14.3 |
| Conread position: | 1-120 |
| Cow position: | chr17:22552594-22552475 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 51-741 |
| Cow position: | chr17:22452526-22451838 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 14 |
| Conread position: | 133-523 |
| Cow position: | chr17:22498957-22498567 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 133-705 |
| Cow position: | chr17:22589748-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 133-730 |
| Cow position: | chr17:22552078-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 197 |
| Conread position: | 133-741 |
| Cow position: | chr17:22589832-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 201 |
| Conread position: | 133-768 |
| Cow position: | chr17:22590168-22589532 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 202 |
| Conread position: | 133-774 |
| Cow position: | chr17:22552750-22552108 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 431 |
| Conread position: | 133-776 |
| Cow position: | chr17:22553086-22552442 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 133-780 |
| Cow position: | chr17:22552162-22551514 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 108 |
| Conread position: | 133-780 |
| Cow position: | chr17:22552246-22551598 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 133-780 |
| Cow position: | chr17:22552498-22551850 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 442 |
| Conread position: | 133-780 |
| Cow position: | chr17:22589916-22589268 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 109 |
| Conread position: | 136-747 |
| Cow position: | chr17:22552999-22552387 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 136-780 |
| Cow position: | chr17:22552831-22552186 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 199 |
| Conread position: | 137-468 |
| Cow position: | chr17:22498869-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 133, 113 |
| Conread position: | 137-491 |
| Cow position: | chr17:22473608-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 137-654 |
| Cow position: | chr17:22452191-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 138-707 |
| Cow position: | chr17:22473357-22473928 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 138-741 |
| Cow position: | chr17:22590247-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 138-743 |
| Cow position: | chr17:22499288-22498681 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 141-458 |
| Cow position: | chr17:22589488-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 98, 122 |
| Conread position: | 141-741 |
| Cow position: | chr17:22552910-22552309 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 434 |
| Conread position: | 145-738 |
| Cow position: | chr17:22452268-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 171 |
| Conread position: | 152-780 |
| Cow position: | chr17:22452512-22451883 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 188 |
| Conread position: | 179-741 |
| Cow position: | chr17:22499331-22498768 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 245 |
| Conread position: | 180-741 |
| Cow position: | chr17:22590289-22589727 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 181-780 |
| Cow position: | chr17:22553122-22552522 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 154 |
| Conread position: | 207-780 |
| Cow position: | chr17:22499387-22498813 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 348 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 215-741 |
| Cow position: | chr17:22473266-22473793 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 278 |
| Conread position: | 221-741 |
| Cow position: | chr17:22553166-22552645 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 0 |
| Conread position: | 285-745 |
| Cow position: | chr17:22499393-22498931 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 305 |
| Conread position: | 364-744 |
| Cow position: | chr17:22499398-22499016 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 177, 216 |
| Conread position: | 544-780 |
| Cow position: | chr17:22590260-22590024 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 36, 27 |
Show alignments to all cow chromosomes.