Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8003L14.3 |
| Conread position: | 133-494 |
| Cow position: | chr19:20635362-20635001 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 119, 109 |
| Conread position: | 133-500 |
| Cow position: | chr19:14948447-14948082 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 207, 47 |
| Conread position: | 133-535 |
| Cow position: | chr19:23650077-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 133-741 |
| Cow position: | chr19:14959466-14958872 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 378 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 133-741 |
| Cow position: | chr19:23613871-23614480 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 133-743 |
| Cow position: | chr19:14940427-14941039 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 133-745 |
| Cow position: | chr19:23649825-23650439 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 133-780 |
| Cow position: | chr19:14940007-14940655 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 133-780 |
| Cow position: | chr19:14940091-14940739 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 277 |
| Conread position: | 133-780 |
| Cow position: | chr19:14959550-14958917 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 406 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 133-780 |
| Cow position: | chr19:20677634-20678282 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 402 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 133-780 |
| Cow position: | chr19:23596883-23597528 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 133-780 |
| Cow position: | chr19:23613619-23614267 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 133-780 |
| Cow position: | chr19:23649741-23650389 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 134-498 |
| Cow position: | chr19:14948363-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 134-780 |
| Cow position: | chr19:14960037-14959406 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 397 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 135-738 |
| Cow position: | chr19:23613369-23613973 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 135-780 |
| Cow position: | chr19:23613537-23614183 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 135-780 |
| Cow position: | chr19:43570444-43569809 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 137-447 |
| Cow position: | chr19:43569949-43569643 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 137-618 |
| Cow position: | chr19:14960200-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 137-707 |
| Cow position: | chr19:23614547-23615116 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 137-739 |
| Cow position: | chr19:14959712-14959120 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 137-741 |
| Cow position: | chr19:23613959-23614564 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 137-745 |
| Cow position: | chr19:23614127-23614737 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 105 |
| Conread position: | 137-780 |
| Cow position: | chr19:14940347-14940991 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 137-780 |
| Cow position: | chr19:23613455-23614099 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 137-780 |
| Cow position: | chr19:23613791-23614435 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 116 |
| Conread position: | 137-780 |
| Cow position: | chr19:23649577-23650221 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 399 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 138-530 |
| Cow position: | chr19:23597305-23597697 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 138-531 |
| Cow position: | chr19:14940684-14941077 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 252 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 138-651 |
| Cow position: | chr19:20678227-20678738 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 319 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 138-668 |
| Cow position: | chr19:23649914-23650444 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 202 |
| Conread position: | 138-741 |
| Cow position: | chr19:14960367-14959767 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 138-741 |
| Cow position: | chr19:20677807-20678411 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 138-741 |
| Cow position: | chr19:20677975-20678579 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 138-741 |
| Cow position: | chr19:20678059-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 138-745 |
| Cow position: | chr19:43570358-43569759 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 138-780 |
| Cow position: | chr19:14940180-14940823 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 138-780 |
| Cow position: | chr19:20677891-20678534 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 138-780 |
| Cow position: | chr19:23596972-23597612 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 141-745 |
| Cow position: | chr19:23649497-23650103 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 141-776 |
| Cow position: | chr19:23614467-23615103 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 185 |
| Conread position: | 145-642 |
| Cow position: | chr19:20635519-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 171-627 |
| Cow position: | chr19:23597254-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 171-776 |
| Cow position: | chr19:23649443-23650049 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 160 |
| Conread position: | 176-707 |
| Cow position: | chr19:14916025-14916540 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 333 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 178-539 |
| Cow position: | chr19:14959178-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 162, 58 |
| Conread position: | 179-455 |
| Cow position: | chr19:14959099-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 160, 152 |
| Conread position: | 179-540 |
| Cow position: | chr19:43570075-43569716 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 74, 63 |
| Conread position: | 179-563 |
| Cow position: | chr19:20635400-20635015 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 362, 0 |
| Conread position: | 179-741 |
| Cow position: | chr19:23614421-23614984 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 63 |
| Conread position: | 180-660 |
| Cow position: | chr19:14948484-14948004 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 188-780 |
| Cow position: | chr19:23649292-23649885 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 367 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 191-741 |
| Cow position: | chr19:20635640-20635089 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 149 |
| Conread position: | 192-726 |
| Cow position: | chr19:20635555-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 372 |
| Conread position: | 195-741 |
| Cow position: | chr19:20677360-20677907 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 197-780 |
| Cow position: | chr19:14939987-14940571 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 218 |
| Conread position: | 198-780 |
| Cow position: | chr19:14960475-14959894 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 200-780 |
| Cow position: | chr19:23613350-23613931 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 252-780 |
| Cow position: | chr19:20677336-20677862 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 261-745 |
| Cow position: | chr19:23649281-23649767 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 150, 163 |
| Conread position: | 273-737 |
| Cow position: | chr19:14948475-14948011 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 271, 62 |
| Conread position: | 274-743 |
| Cow position: | chr19:20635641-20635170 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 267, 316 |
| Conread position: | 275-711 |
| Cow position: | chr19:14959249-14958818 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 73, 52 |
| Conread position: | 275-742 |
| Cow position: | chr19:14915955-14916420 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 340-780 |
| Cow position: | chr19:14948492-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 212, 80 |
| Conread position: | 352-780 |
| Cow position: | chr19:20635647-20635218 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 196, 238 |
Show alignments to all cow chromosomes.