Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8003L14.3 |
| Conread position: | 1-716 |
| Cow position: | chr22:12419207-12418510 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 115 |
| Conread position: | 132-705 |
| Cow position: | chr22:12385484-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 133-457 |
| Cow position: | chr22:12499643-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 133-490 |
| Cow position: | chr22:14468076-14468433 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 187, 203 |
| Conread position: | 133-522 |
| Cow position: | chr22:11666548-11666937 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 133-530 |
| Cow position: | chr22:12399155-12398758 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 133-540 |
| Cow position: | chr22:11666464-11666871 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 129, 109 |
| Conread position: | 133-626 |
| Cow position: | chr22:12475784-12475290 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 133-659 |
| Cow position: | chr22:11701118-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 330 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 129, 122 |
| Conread position: | 133-741 |
| Cow position: | chr22:11640707-11641316 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 138 |
| Conread position: | 133-776 |
| Cow position: | chr22:12458423-12457779 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 133-780 |
| Cow position: | chr22:12431303-12430655 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 133-780 |
| Cow position: | chr22:12476204-12475556 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 133-780 |
| Cow position: | chr22:12499055-12499703 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 135-414 |
| Cow position: | chr22:12430881-12430602 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 135-780 |
| Cow position: | chr22:12458589-12457943 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 136-780 |
| Cow position: | chr22:12399902-12399263 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 137-374 |
| Cow position: | chr22:12457999-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 202, 191 |
| Conread position: | 137-622 |
| Cow position: | chr22:12418922-12418434 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 137-713 |
| Cow position: | chr22:12475864-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 137-713 |
| Cow position: | chr22:12499395-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 137-737 |
| Cow position: | chr22:12431215-12430614 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 298 |
| Conread position: | 137-741 |
| Cow position: | chr22:12432139-12431533 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 299 |
| Conread position: | 137-780 |
| Cow position: | chr22:12399403-12398759 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 137-780 |
| Cow position: | chr22:12431719-12431075 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 137-780 |
| Cow position: | chr22:12431971-12431327 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 137-780 |
| Cow position: | chr22:12475948-12475304 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 137-780 |
| Cow position: | chr22:12476368-12475724 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 137-780 |
| Cow position: | chr22:12498891-12499535 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 138-522 |
| Cow position: | chr22:11701291-11701675 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 138-614 |
| Cow position: | chr22:12399234-12398757 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 437 |
| Conread position: | 138-660 |
| Cow position: | chr22:11640880-11641403 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 332 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 138-692 |
| Cow position: | chr22:12419005-12418450 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 347 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 138-707 |
| Cow position: | chr22:12458334-12457764 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 138-741 |
| Cow position: | chr22:11640796-11641400 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 138-741 |
| Cow position: | chr22:12431382-12430778 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 138-741 |
| Cow position: | chr22:12432222-12431618 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 138-780 |
| Cow position: | chr22:12432390-12431747 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 138-780 |
| Cow position: | chr22:12499312-12499955 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 139-741 |
| Cow position: | chr22:14429837-14430440 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 103, 125 |
| Conread position: | 140-745 |
| Cow position: | chr22:14429754-14430361 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 368 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 141-469 |
| Cow position: | chr22:46654458-46654786 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 141-663 |
| Cow position: | chr22:14468252-14468765 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 141-735 |
| Cow position: | chr22:12419187-12418575 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 354 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 141-741 |
| Cow position: | chr22:46654122-46654723 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 141-780 |
| Cow position: | chr22:46654038-46654678 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 154-780 |
| Cow position: | chr22:12385716-12385085 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 163-780 |
| Cow position: | chr22:12419334-12418698 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 171-741 |
| Cow position: | chr22:46653984-46654555 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 177-741 |
| Cow position: | chr22:14441937-14442502 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 333 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 127, 132 |
| Conread position: | 177-741 |
| Cow position: | chr22:14467952-14468517 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 151 |
| Conread position: | 179-490 |
| Cow position: | chr22:14442275-14442586 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 5, 9 |
| Conread position: | 179-741 |
| Cow position: | chr22:12476410-12475847 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 234 |
| Conread position: | 179-741 |
| Cow position: | chr22:12498849-12499412 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 234 |
| Conread position: | 179-780 |
| Cow position: | chr22:12399445-12398843 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 479 |
| Conread position: | 180-655 |
| Cow position: | chr22:14430550-14431019 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 84 |
| Conread position: | 180-741 |
| Cow position: | chr22:11640670-11641232 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 352 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 117, 129 |
| Conread position: | 180-741 |
| Cow position: | chr22:12432432-12431870 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 81 |
| Conread position: | 180-741 |
| Cow position: | chr22:14429710-14430272 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 347 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 123, 129 |
| Conread position: | 180-741 |
| Cow position: | chr22:14430214-14430776 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 70, 84 |
| Conread position: | 180-780 |
| Cow position: | chr22:12431424-12430823 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 567 |
| Conread position: | 181-741 |
| Cow position: | chr22:12458627-12458066 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 183-743 |
| Cow position: | chr22:14429548-14430107 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 335 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 120, 65 |
| Conread position: | 187-741 |
| Cow position: | chr22:14442031-14442586 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 336 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 189-535 |
| Cow position: | chr22:14442369-14442712 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 189-780 |
| Cow position: | chr22:12385511-12384917 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 198-747 |
| Cow position: | chr22:12432498-12431948 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 336 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 218, 226 |
| Conread position: | 204-659 |
| Cow position: | chr22:11666451-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 122, 140 |
| Conread position: | 204-741 |
| Cow position: | chr22:11701105-11701643 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 122, 140 |
| Conread position: | 227-755 |
| Cow position: | chr22:14429508-14430034 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 321, 99 |
| Conread position: | 372-741 |
| Cow position: | chr22:12419023-12418653 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 420-780 |
| Cow position: | chr22:12498838-12499199 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 126, 144 |
Show alignments to all cow chromosomes.