Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8003L14.3 |
| Conread position: | 11-741 |
| Cow position: | chr23:24522926-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 149 |
| Conread position: | 133-391 |
| Cow position: | chr23:24626493-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 133-540 |
| Cow position: | chr23:24535944-24535537 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 133-540 |
| Cow position: | chr23:24639653-24640060 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 133-660 |
| Cow position: | chr23:25660168-25660696 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 133-705 |
| Cow position: | chr23:25626467-25627037 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 115 |
| Conread position: | 133-709 |
| Cow position: | chr23:24560621-24560042 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 133-741 |
| Cow position: | chr23:24547313-24546704 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 133-780 |
| Cow position: | chr23:25626131-25626776 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 135-493 |
| Cow position: | chr23:24522549-24522191 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 137-458 |
| Cow position: | chr23:24546973-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 137-468 |
| Cow position: | chr23:24654054-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 137-477 |
| Cow position: | chr23:24639741-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 137-530 |
| Cow position: | chr23:25724106-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 137-546 |
| Cow position: | chr23:24626329-24626739 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 137-548 |
| Cow position: | chr23:24535856-24535445 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 203, 198 |
| Conread position: | 137-636 |
| Cow position: | chr23:24639573-24640073 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 314 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 137-713 |
| Cow position: | chr23:24639489-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 137-725 |
| Cow position: | chr23:25698635-25698046 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 363 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 137-741 |
| Cow position: | chr23:24560869-24560264 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 137-741 |
| Cow position: | chr23:24639321-24639926 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 137-780 |
| Cow position: | chr23:24560785-24560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 137-780 |
| Cow position: | chr23:24639237-24639881 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 152 |
| Conread position: | 137-780 |
| Cow position: | chr23:24639405-24640049 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 98 |
| Conread position: | 137-780 |
| Cow position: | chr23:25626219-25626860 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 138-615 |
| Cow position: | chr23:25660257-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 138-705 |
| Cow position: | chr23:24560700-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 138-741 |
| Cow position: | chr23:24536023-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 141-458 |
| Cow position: | chr23:25626724-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 171-707 |
| Cow position: | chr23:24626279-24626812 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 336 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 176-655 |
| Cow position: | chr23:25626006-25626486 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 390 |
| Conread position: | 176-775 |
| Cow position: | chr23:25698680-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 362 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 179-678 |
| Cow position: | chr23:24522670-24522173 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 322 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 62, 78 |
| Conread position: | 179-769 |
| Cow position: | chr23:25626429-25627017 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 106 |
| Conread position: | 180-780 |
| Cow position: | chr23:24560910-24560309 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 194-714 |
| Cow position: | chr23:24536051-24535530 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 316 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 347, 370 |
| Conread position: | 198-741 |
| Cow position: | chr23:25625946-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 339 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 145, 21 |
| Conread position: | 200-780 |
| Cow position: | chr23:24547330-24546749 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 209-538 |
| Cow position: | chr23:24654042-24654371 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 130, 117 |
| Conread position: | 216-613 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 216-780 |
| Cow position: | chr23:25660167-25660732 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 119 |
| Conread position: | 278-776 |
| Cow position: | chr23:25660145-25660644 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 314 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 280-780 |
| Cow position: | chr23:24547334-24546833 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 308-741 |
| Cow position: | chr23:24536021-24535587 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 267 |
| Conread position: | 310-780 |
| Cow position: | chr23:24522791-24522323 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 363-780 |
| Cow position: | chr23:24626303-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 227 |
| Conread position: | 377-745 |
| Cow position: | chr23:24654042-24654414 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 388-780 |
| Cow position: | chr23:25724107-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 436-780 |
| Cow position: | chr23:25724143-25723798 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 61, 47 |
| Conread position: | 462-780 |
| Cow position: | chr23:24654043-24654362 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 110 |
| Conread position: | 514-780 |
| Cow position: | chr23:25626008-25626275 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 58 |
Show alignments to all cow chromosomes.