Cow genome map

Conread name: Ss1.1-Pig4-TMW8003L14.3

Conread position: 133-484
Cow position: chr25:33305782-33305434 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 225
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 40, 23

Conread position: 133-518
Cow position: chr25:34447542-34447916 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 238
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 297, 161

Conread position: 133-520
Cow position: chr25:23420483-23420870 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 264
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 40, 23

Conread position: 133-645
Cow position: chr25:34447374-34447880 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 331
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 36, 18

Conread position: 133-741
Cow position: chr25:34769856-34769247 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 17

Conread position: 133-741
Cow position: chr25:36800815-36801412 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 349

Conread position: 133-780
Cow position: chr25:33298579-33299227 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 207

Conread position: 133-780
Cow position: chr25:33298999-33299647 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 39

Conread position: 133-780
Cow position: chr25:34770108-34769460 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 17

Conread position: 134-669
Cow position: chr25:23420316-23420851 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 14

Conread position: 135-485
Cow position: chr25:22235847-22236197 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 221
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 21

Conread position: 135-539
Cow position: chr25:33127820-33128224 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 256
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 32, 21

Conread position: 135-735
Cow position: chr25:36801393-36801990 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 371
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 36, 16

Conread position: 135-775
Cow position: chr25:33157371-33156731 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 137-669
Cow position: chr25:33144869-33145399 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 316
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 27, 20

Conread position: 137-735
Cow position: chr25:33298751-33299350 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 137-735
Cow position: chr25:36800735-36801334 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 35

Conread position: 137-743
Cow position: chr25:33157453-33156845 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 21

Conread position: 137-768
Cow position: chr25:34447042-34447674 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 21

Conread position: 137-780
Cow position: chr25:33299171-33299815 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 14

Conread position: 137-780
Cow position: chr25:34769936-34769292 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 15

Conread position: 138-378
Cow position: chr25:33127991-33128231 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 26, 12

Conread position: 138-400
Cow position: chr25:366746-367008 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 23

Conread position: 138-457
Cow position: chr25:22236018-22236337 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 206
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 18

Conread position: 138-457
Cow position: chr25:33299508-33299827 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 207
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 18

Conread position: 138-521
Cow position: chr25:33305298-33304918 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 240
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 15

Conread position: 138-530
Cow position: chr25:33127739-33128131 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 22

Conread position: 138-539
Cow position: chr25:346469-346869 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 251
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 33, 23

Conread position: 138-660
Cow position: chr25:34769767-34769244 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 14

Conread position: 138-732
Cow position: chr25:34447211-34447799 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 18

Conread position: 138-745
Cow position: chr25:34732587-34731978 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 356
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 22

Conread position: 138-748
Cow position: chr25:326518-327135 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 368
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 285, 271

Conread position: 139-412
Cow position: chr25:414753-414485 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 182
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 33, 21

Conread position: 139-741
Cow position: chr25:34713888-34714491 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 368
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 25, 17

Conread position: 140-660
Cow position: chr25:34713973-34714494 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 315
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 32, 10

Conread position: 141-445
Cow position: chr25:23420575-23420879 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 202
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 16, 31

Conread position: 141-459
Cow position: chr25:326947-327265 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 207
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 13

Conread position: 141-622
Cow position: chr25:33144957-33145436 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 299
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 23, 9

Conread position: 141-733
Cow position: chr25:34762853-34763443 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 346
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 15

Conread position: 141-780
Cow position: chr25:33298671-33299311 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 22

Conread position: 145-780
Cow position: chr25:36801246-36801871 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 90

Conread position: 146-744
Cow position: chr25:34713810-34714411 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 357
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 23, 423

Conread position: 171-524
Cow position: chr25:18642201-18641845 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 218
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 135, 0

Conread position: 171-743
Cow position: chr25:34446992-34447566 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 156

Conread position: 171-780
Cow position: chr25:23420200-23420795 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 75

Conread position: 171-780
Cow position: chr25:33157503-33156893 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 160

Conread position: 174-707
Cow position: chr25:34433497-34434025 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 324
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 166, 108

Conread position: 174-776
Cow position: chr25:34770151-34769548 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 68

Conread position: 179-679
Cow position: chr25:33305340-33304845 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 320
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 297, 22

Conread position: 179-740
Cow position: chr25:33299297-33299855 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 146

Conread position: 180-764
Cow position: chr25:33305421-33304844 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 26

Conread position: 180-776
Cow position: chr25:33306318-33305726 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 373
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 127, 36

Conread position: 180-776
Cow position: chr25:36800526-36801123 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 145

Conread position: 190-706
Cow position: chr25:33127707-33128224 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 378

Conread position: 191-735
Cow position: chr25:33305972-33305434 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 27

Conread position: 192-485
Cow position: chr25:326488-326781 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 20

Conread position: 196-741
Cow position: chr25:33144844-33145387 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 46

Conread position: 198-780
Cow position: chr25:36801372-36801955 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 137

Conread position: 199-741
Cow position: chr25:33306050-33305513 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 338
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 6, 105

Conread position: 200-535
Cow position: chr25:346447-346782 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 211
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 103, 109

Conread position: 200-780
Cow position: chr25:34446937-34447518 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 124

Conread position: 201-677
Cow position: chr25:22235829-22236306 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 290
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 49, 41

Conread position: 201-768
Cow position: chr25:33298479-33299047 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 546

Conread position: 204-780
Cow position: chr25:33298566-33299143 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 214

Conread position: 204-780
Cow position: chr25:36800634-36801211 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 220

Conread position: 225-540
Cow position: chr25:326947-327262 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 200
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 256, 264

Conread position: 271-687
Cow position: chr25:34732621-34732205 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 252
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 7

Conread position: 280-630
Cow position: chr25:346443-346794 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 223
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 29

Conread position: 282-780
Cow position: chr25:33144846-33145342 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 306
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 270, 192

Conread position: 285-489
Cow position: chr25:34433020-34433224 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 134
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 285-776
Cow position: chr25:36800463-36800955 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 301
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 51, 27

Conread position: 308-780
Cow position: chr25:33127741-33128214 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 260

Conread position: 320-738
Cow position: chr25:326448-326867 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 252
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 15

Conread position: 359-780
Cow position: chr25:34446928-34447350 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 252
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 65

Conread position: 360-745
Cow position: chr25:33298470-33298857 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 255
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 41, 76

Conread position: 431-738
Cow position: chr25:18642193-18641882 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 197
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 144

Conread position: 463-780
Cow position: chr25:33127728-33128046 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 203
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 85, 112

Show alignments to all cow chromosomes.