Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8003L14.3 |
| Conread position: | 129-703 |
| Cow position: | chr28:7758336-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 329 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 268, 295 |
| Conread position: | 133-736 |
| Cow position: | chr28:7757600-7758204 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 135-388 |
| Cow position: | chr28:7810693-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 135-780 |
| Cow position: | chr28:9298835-9299465 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 136-713 |
| Cow position: | chr28:9253038-9253617 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 439 |
| Conread position: | 137-473 |
| Cow position: | chr28:7810611-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 137-489 |
| Cow position: | chr28:9290272-9290622 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 137-530 |
| Cow position: | chr28:33210248-33210642 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 137-720 |
| Cow position: | chr28:7810368-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 137-774 |
| Cow position: | chr28:7757940-7758562 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 137-776 |
| Cow position: | chr28:7810284-7810915 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 137-780 |
| Cow position: | chr28:7757436-7758080 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 211 |
| Conread position: | 137-780 |
| Cow position: | chr28:7757520-7758164 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 137-780 |
| Cow position: | chr28:7757688-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 137-780 |
| Cow position: | chr28:9298671-9299297 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 406 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 36, 5 |
| Conread position: | 137-780 |
| Cow position: | chr28:11334201-11333557 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 357 |
| Conread position: | 138-659 |
| Cow position: | chr28:34673376-34673898 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 140-399 |
| Cow position: | chr28:9290442-9290700 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 141-459 |
| Cow position: | chr28:9299245-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 141-745 |
| Cow position: | chr28:34695936-34696542 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 376 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 171-707 |
| Cow position: | chr28:11333915-11333384 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 335 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 79, 71 |
| Conread position: | 171-750 |
| Cow position: | chr28:9290142-9290716 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 173-776 |
| Cow position: | chr28:9252740-9253343 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 137 |
| Conread position: | 176-780 |
| Cow position: | chr28:7810248-7810835 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 38 |
| Conread position: | 179-707 |
| Cow position: | chr28:9299045-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 253, 141 |
| Conread position: | 179-738 |
| Cow position: | chr28:9290066-9290620 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 141 |
| Conread position: | 179-780 |
| Cow position: | chr28:9252912-9253515 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 147 |
| Conread position: | 180-540 |
| Cow position: | chr28:34696227-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 124, 130 |
| Conread position: | 181-741 |
| Cow position: | chr28:9252584-9253140 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 342 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 182-780 |
| Cow position: | chr28:7757397-7757996 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 254 |
| Conread position: | 191-780 |
| Cow position: | chr28:9253009-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 140 |
| Conread position: | 192-736 |
| Cow position: | chr28:9298643-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 193-741 |
| Cow position: | chr28:9289910-9290456 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 351 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 75, 41 |
| Conread position: | 199-740 |
| Cow position: | chr28:34673353-34673896 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 335 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 211, 220 |
| Conread position: | 201-562 |
| Cow position: | chr28:33210228-33210591 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 107 |
| Conread position: | 224-780 |
| Cow position: | chr28:9298590-9299143 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 354 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 252-776 |
| Cow position: | chr28:9289807-9290324 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 329 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 183, 76 |
| Conread position: | 260-775 |
| Cow position: | chr28:9289731-9290241 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 79, 74 |
| Conread position: | 260-780 |
| Cow position: | chr28:7810248-7810751 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 39 |
| Conread position: | 269-780 |
| Cow position: | chr28:7758309-7758819 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 294 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 283, 11 |
| Conread position: | 282-776 |
| Cow position: | chr28:9299218-9299710 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 287-741 |
| Cow position: | chr28:7757334-7757789 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 290 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 339-741 |
| Cow position: | chr28:34679588-34679184 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 367-741 |
| Cow position: | chr28:34673353-34673728 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 134, 150 |
Show alignments to all cow chromosomes.