Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8003L14.3 |
| Conread position: | 2-127 |
| Cow position: | chrX:29044919-29044794 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 133-468 |
| Cow position: | chrX:29044992-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 133-714 |
| Cow position: | chrX:25324815-25324233 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 133-741 |
| Cow position: | chrX:25325487-25324878 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 133-780 |
| Cow position: | chrX:25325067-25324419 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 193 |
| Conread position: | 133-780 |
| Cow position: | chrX:25325319-25324671 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 133-780 |
| Cow position: | chrX:29045328-29044680 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 197 |
| Conread position: | 135-387 |
| Cow position: | chrX:29044906-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 135-705 |
| Cow position: | chrX:29045242-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 448 |
| Conread position: | 136-459 |
| Cow position: | chrX:25310245-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 106 |
| Conread position: | 136-540 |
| Cow position: | chrX:25310161-25310565 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 281 |
| Conread position: | 136-661 |
| Cow position: | chrX:13826845-13826319 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 26, 22 |
| Conread position: | 136-780 |
| Cow position: | chrX:25309825-25310470 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 137-452 |
| Cow position: | chrX:29045723-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 137-687 |
| Cow position: | chrX:25324727-25324180 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 137-723 |
| Cow position: | chrX:25309994-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 427 |
| Conread position: | 137-736 |
| Cow position: | chrX:25309910-25310510 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 137-741 |
| Cow position: | chrX:25309742-25310347 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 137-780 |
| Cow position: | chrX:25325735-25325091 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 138-780 |
| Cow position: | chrX:25324978-25324335 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 139-780 |
| Cow position: | chrX:25325565-25324923 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 141-768 |
| Cow position: | chrX:13826924-13826296 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 366 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 111, 115 |
| Conread position: | 145-780 |
| Cow position: | chrX:25324888-25324251 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 182 |
| Conread position: | 175-741 |
| Cow position: | chrX:25309696-25310263 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 60 |
| Conread position: | 179-741 |
| Cow position: | chrX:12627333-12627894 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 336 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 179-780 |
| Cow position: | chrX:25325609-25325007 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 147 |
| Conread position: | 180-537 |
| Cow position: | chrX:14181327-14180970 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 180-780 |
| Cow position: | chrX:25325776-25325175 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 155 |
| Conread position: | 187-495 |
| Cow position: | chrX:29045757-29045449 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 216-776 |
| Cow position: | chrX:29045329-29044768 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 221-656 |
| Cow position: | chrX:29045807-29045371 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 279 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 274-654 |
| Cow position: | chrX:29045838-29045457 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 261, 290 |
| Conread position: | 315-741 |
| Cow position: | chrX:25309668-25310095 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 179 |
| Conread position: | 358-776 |
| Cow position: | chrX:29045838-29045419 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 190, 214 |
| Conread position: | 483-776 |
| Cow position: | chrX:25309668-25309962 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 527-780 |
| Cow position: | chrX:29045837-29045583 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 16, 144 |
| Conread position: | 534-780 |
| Cow position: | chrX:29045744-29045499 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.