Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8005D07.5 |
| Conread position: | 131-258 |
| Cow position: | chr28:5366369-5366241 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 138-245 |
| Cow position: | chr28:12619330-12619440 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-246 |
| Cow position: | chr28:23254031-23253922 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 138-255 |
| Cow position: | chr28:14742568-14742689 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 138-255 |
| Cow position: | chr28:26533310-26533430 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-256 |
| Cow position: | chr28:17738311-17738190 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-257 |
| Cow position: | chr28:4058492-4058614 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 138-257 |
| Cow position: | chr28:23530632-23530754 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 138-257 |
| Cow position: | chr28:28766142-28766020 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:2862629-2862752 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:2905348-2905467 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 138-258 |
| Cow position: | chr28:4022150-4022271 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 92 |
| Conread position: | 138-258 |
| Cow position: | chr28:4282724-4282603 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 98 |
| Conread position: | 138-258 |
| Cow position: | chr28:4914334-4914211 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:6059705-6059581 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:7372483-7372364 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 93 |
| Conread position: | 138-258 |
| Cow position: | chr28:7389093-7389214 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:7882569-7882697 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:8348885-8348763 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 138-258 |
| Cow position: | chr28:8372238-8372361 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:8911451-8911329 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 138-258 |
| Cow position: | chr28:9285610-9285487 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:9636689-9636566 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:10172646-10172523 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:10888431-10888554 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:11380275-11380152 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:11426777-11426655 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 138-258 |
| Cow position: | chr28:11585440-11585318 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 138-258 |
| Cow position: | chr28:11687265-11687142 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:11752377-11752254 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:11884755-11884633 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 34, 63 |
| Conread position: | 138-258 |
| Cow position: | chr28:13176911-13176788 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:15375058-15374935 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:16204566-16204442 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:16211329-16211205 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:16879500-16879387 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:20124553-20124670 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 75 |
| Conread position: | 138-258 |
| Cow position: | chr28:20760156-20760033 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:21104079-21103958 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 138-258 |
| Cow position: | chr28:22345787-22345906 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 138-258 |
| Cow position: | chr28:23775813-23775936 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:24646308-24646431 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:25498736-25498613 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-258 |
| Cow position: | chr28:25596400-25596519 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 138-261 |
| Cow position: | chr28:7751533-7751407 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 138-261 |
| Cow position: | chr28:10295957-10296083 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 139-258 |
| Cow position: | chr28:3078909-3078794 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 139-258 |
| Cow position: | chr28:19222378-19222255 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 139-258 |
| Cow position: | chr28:33051789-33051915 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 140-254 |
| Cow position: | chr28:4841627-4841509 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 140-256 |
| Cow position: | chr28:7980649-7980530 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 140-256 |
| Cow position: | chr28:16919392-16919275 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 96 |
| Conread position: | 140-258 |
| Cow position: | chr28:14649118-14649235 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 140-258 |
| Cow position: | chr28:18591040-18591160 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 140-258 |
| Cow position: | chr28:23459914-23460035 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 141-246 |
| Cow position: | chr28:14997834-14997940 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 141-254 |
| Cow position: | chr28:7549292-7549176 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 141-256 |
| Cow position: | chr28:3751089-3751202 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 33, 69 |
| Conread position: | 141-256 |
| Cow position: | chr28:15063569-15063450 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 141-257 |
| Cow position: | chr28:2819529-2819646 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 141-258 |
| Cow position: | chr28:3077763-3077876 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 141-258 |
| Cow position: | chr28:7512821-7512701 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 141-258 |
| Cow position: | chr28:7684907-7684792 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 141-258 |
| Cow position: | chr28:7698212-7698094 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 141-258 |
| Cow position: | chr28:13267552-13267672 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 141-258 |
| Cow position: | chr28:14933732-14933852 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 141-258 |
| Cow position: | chr28:21502165-21502281 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 141-258 |
| Cow position: | chr28:22321192-22321312 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 141-258 |
| Cow position: | chr28:31841569-31841448 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 141-261 |
| Cow position: | chr28:8103619-8103498 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 142-255 |
| Cow position: | chr28:15263953-15263837 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 142-255 |
| Cow position: | chr28:27218092-27218208 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 142-257 |
| Cow position: | chr28:33163696-33163578 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 142-258 |
| Cow position: | chr28:3144120-3144005 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 142-258 |
| Cow position: | chr28:5128956-5128839 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 143-258 |
| Cow position: | chr28:21844728-21844846 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 143-258 |
| Cow position: | chr28:21868224-21868342 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 144-258 |
| Cow position: | chr28:17316632-17316750 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 144-258 |
| Cow position: | chr28:22371905-22371790 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 145-258 |
| Cow position: | chr28:8629002-8628890 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 150-258 |
| Cow position: | chr28:3256572-3256684 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 151-248 |
| Cow position: | chr28:3448788-3448886 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 151-258 |
| Cow position: | chr28:30303414-30303307 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 152-258 |
| Cow position: | chr28:2738030-2737921 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 164-260 |
| Cow position: | chr28:8935731-8935826 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
Show alignments to all cow chromosomes.