Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8006F06.5 |
| Conread position: | 339-873 |
| Cow position: | chr29:16018327-16018863 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 368 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 153 |
| Conread position: | 884-1009 |
| Cow position: | chr29:799529-799653 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 886-994 |
| Cow position: | chr29:2430250-2430143 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 887-1008 |
| Cow position: | chr29:9079639-9079763 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 892-968 |
| Cow position: | chr29:40954743-40954819 (view UCSC Genome Browser custom track) |
| Alignm length: | 77 |
| Alignm identity: | 72 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-987 |
| Cow position: | chr29:38350202-38350298 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 892-988 |
| Cow position: | chr29:14208408-14208504 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-992 |
| Cow position: | chr29:45310-45409 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 892-992 |
| Cow position: | chr29:408112-408212 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-992 |
| Cow position: | chr29:16036265-16036365 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-992 |
| Cow position: | chr29:35273887-35273987 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-993 |
| Cow position: | chr29:34806872-34806972 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 892-993 |
| Cow position: | chr29:34807001-34807101 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 892-993 |
| Cow position: | chr29:34807130-34807230 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:726881-726779 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:2102999-2102897 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:2307154-2307052 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:2838184-2838286 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:4200530-4200428 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:5240546-5240444 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:6262857-6262958 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:6934641-6934542 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:7427990-7428092 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:7812045-7812147 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:10644259-10644361 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:10820563-10820665 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:11159372-11159474 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:13099325-13099220 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:16101965-16102067 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:19515192-19515294 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:19525137-19525239 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:19620117-19620218 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:20254318-20254217 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:23979863-23979761 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:25929355-25929459 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:26161681-26161787 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:27702229-27702127 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:28697227-28697328 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:31184528-31184426 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:31765192-31765090 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:32543290-32543187 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:35265069-35264967 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:35300071-35299969 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:39076566-39076668 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:40498724-40498825 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:42807143-42807041 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:43326666-43326564 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:45207662-45207561 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 892-994 |
| Cow position: | chr29:45462385-45462283 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-995 |
| Cow position: | chr29:8624044-8624147 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-995 |
| Cow position: | chr29:34794711-34794814 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-1001 |
| Cow position: | chr29:32893866-32893757 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-1007 |
| Cow position: | chr29:10846108-10845993 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 892-1009 |
| Cow position: | chr29:27259960-27260077 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 893-988 |
| Cow position: | chr29:2463721-2463816 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 893-994 |
| Cow position: | chr29:10452665-10452765 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 893-994 |
| Cow position: | chr29:14839171-14839070 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 893-994 |
| Cow position: | chr29:22279525-22279424 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 893-1008 |
| Cow position: | chr29:2184257-2184142 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 893-1008 |
| Cow position: | chr29:17408283-17408168 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 893-1008 |
| Cow position: | chr29:30433041-30433156 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 893-1009 |
| Cow position: | chr29:35280964-35281080 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 894-1008 |
| Cow position: | chr29:27857722-27857608 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 897-993 |
| Cow position: | chr29:15995235-15995331 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 897-1008 |
| Cow position: | chr29:11786150-11786039 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 897-1008 |
| Cow position: | chr29:32289538-32289427 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 897-1008 |
| Cow position: | chr29:36634204-36634314 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 911-994 |
| Cow position: | chr29:16347339-16347256 (view UCSC Genome Browser custom track) |
| Alignm length: | 84 |
| Alignm identity: | 74 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.