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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8006H03.3
        

               
Conread position:
               
133-318
               

               
Cow position:
               
chr21:31462865-31462680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
136-321
               

               
Cow position:
               
chr21:15444776-15444970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
140-509
               

               
Cow position:
               
chr21:40266420-40266056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
109, 34
               

               
Conread position:
               
143-509
               

               
Cow position:
               
chr21:29001851-29002223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 44
               

               
Conread position:
               
144-410
               

               
Cow position:
               
chr21:40475803-40475532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 181
               

               
Conread position:
               
145-509
               

               
Cow position:
               
chr21:17184211-17183855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
145-592
               

               
Cow position:
               
chr21:4281583-4282020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
146-383
               

               
Cow position:
               
chr21:48482237-48482469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
146-386
               

               
Cow position:
               
chr21:38943314-38943563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
149-482
               

               
Cow position:
               
chr21:10072459-10072108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
150-321
               

               
Cow position:
               
chr21:12473771-12473945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 166
               

               
Conread position:
               
150-407
               

               
Cow position:
               
chr21:46809475-46809736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
151-498
               

               
Cow position:
               
chr21:30255969-30256316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
107, 38
               

               
Conread position:
               
152-509
               

               
Cow position:
               
chr21:6998230-6997873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
153-505
               

               
Cow position:
               
chr21:8349605-8349267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
158-498
               

               
Cow position:
               
chr21:22014472-22014133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
159-321
               

               
Cow position:
               
chr21:9315080-9314920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
148, 22
               

               
Conread position:
               
159-476
               

               
Cow position:
               
chr21:18064645-18064945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
160-346
               

               
Cow position:
               
chr21:36398291-36398474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
166, 27
               

               
Conread position:
               
160-349
               

               
Cow position:
               
chr21:40930198-40930382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
161-385
               

               
Cow position:
               
chr21:26735675-26735466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
161-459
               

               
Cow position:
               
chr21:13036629-13036915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
161-509
               

               
Cow position:
               
chr21:28924387-28924049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
27, 164
               

               
Conread position:
               
162-389
               

               
Cow position:
               
chr21:25012355-25012135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 27
               

               
Conread position:
               
162-408
               

               
Cow position:
               
chr21:11678046-11678269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
162-509
               

               
Cow position:
               
chr21:32297231-32297572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
162-522
               

               
Cow position:
               
chr21:37640843-37640476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
163-472
               

               
Cow position:
               
chr21:28030554-28030260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
163-543
               

               
Cow position:
               
chr21:38449171-38449544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
164-321
               

               
Cow position:
               
chr21:2785228-2785378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
164-390
               

               
Cow position:
               
chr21:28907273-28907492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
164-509
               

               
Cow position:
               
chr21:39403252-39403602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
165-370
               

               
Cow position:
               
chr21:18783192-18783397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
165-390
               

               
Cow position:
               
chr21:40820575-40820801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
85, 122
               

               
Conread position:
               
165-400
               

               
Cow position:
               
chr21:24875623-24875394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
165-407
               

               
Cow position:
               
chr21:24797929-24797692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 24
               

               
Conread position:
               
165-487
               

               
Cow position:
               
chr21:13842767-13842445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
165-509
               

               
Cow position:
               
chr21:5970570-5970904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
206, 79
               

               
Conread position:
               
166-289
               

               
Cow position:
               
chr21:11272572-11272452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
166-315
               

               
Cow position:
               
chr21:11761838-11761684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
166-315
               

               
Cow position:
               
chr21:30368348-30368197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
166-316
               

               
Cow position:
               
chr21:46609730-46609884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
166-318
               

               
Cow position:
               
chr21:12339890-12339741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
166-318
               

               
Cow position:
               
chr21:23783573-23783724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
166-321
               

               
Cow position:
               
chr21:31658880-31659036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
166-323
               

               
Cow position:
               
chr21:42189487-42189643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
166-362
               

               
Cow position:
               
chr21:27744303-27744105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
166-380
               

               
Cow position:
               
chr21:20174585-20174380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
166-407
               

               
Cow position:
               
chr21:43693090-43692852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
166-408
               

               
Cow position:
               
chr21:37837804-37838032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 24
               

               
Conread position:
               
166-433
               

               
Cow position:
               
chr21:19868689-19868946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 23
               

               
Conread position:
               
166-441
               

               
Cow position:
               
chr21:12104627-12104367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
166-445
               

               
Cow position:
               
chr21:13589036-13588761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
88, 20
               

               
Conread position:
               
166-463
               

               
Cow position:
               
chr21:14464862-14464565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
166-465
               

               
Cow position:
               
chr21:18318986-18318692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
166-481
               

               
Cow position:
               
chr21:17983244-17982939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
238, 23
               

               
Conread position:
               
166-481
               

               
Cow position:
               
chr21:41522138-41522444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
166-486
               

               
Cow position:
               
chr21:48527691-48527368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
166-487
               

               
Cow position:
               
chr21:33580684-33580378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
112, 22
               

               
Conread position:
               
166-487
               

               
Cow position:
               
chr21:36911010-36910697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
166-498
               

               
Cow position:
               
chr21:7377645-7377981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 168
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr21:22718511-22718842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
166-508
               

               
Cow position:
               
chr21:33413824-33414149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
166-508
               

               
Cow position:
               
chr21:42135345-42135684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:10264308-10263968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:10817309-10816957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
88, 124
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:11027085-11027419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
68, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:11739844-11740181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 154
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:14452506-14452171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:15584149-15584484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
80, 15
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:17559643-17559994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:19083312-19083661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
78, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:23535986-23535648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:23979906-23980247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:40134419-40134095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:41590293-41590625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:41621401-41621059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:44658834-44658517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:45906348-45906686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr21:47719032-47719364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
166-547
               

               
Cow position:
               
chr21:6909616-6909980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
198, 23
               

               
Conread position:
               
166-547
               

               
Cow position:
               
chr21:9301498-9301112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 19
               

               
Conread position:
               
166-547
               

               
Cow position:
               
chr21:17874915-17875292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 25
               

               
Conread position:
               
168-487
               

               
Cow position:
               
chr21:20153228-20152911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
168-498
               

               
Cow position:
               
chr21:17890574-17890247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
86, 21
               

               
Conread position:
               
169-487
               

               
Cow position:
               
chr21:30231426-30231734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
170-320
               

               
Cow position:
               
chr21:18055861-18056013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
170-463
               

               
Cow position:
               
chr21:13656365-13656654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
170-467
               

               
Cow position:
               
chr21:71855-71561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
170-483
               

               
Cow position:
               
chr21:36695821-36696129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
170-487
               

               
Cow position:
               
chr21:29014647-29014956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
170-509
               

               
Cow position:
               
chr21:30592045-30592369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 19
               

               
Conread position:
               
171-315
               

               
Cow position:
               
chr21:42341673-42341817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
171-370
               

               
Cow position:
               
chr21:745438-745247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
171-372
               

               
Cow position:
               
chr21:27409463-27409662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
25, 124
               

               
Conread position:
               
171-408
               

               
Cow position:
               
chr21:16498788-16498553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 158
               

               
Conread position:
               
171-459
               

               
Cow position:
               
chr21:9256388-9256672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
122, 18
               

               
Conread position:
               
171-459
               

               
Cow position:
               
chr21:44724106-44724380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 109
               

               
Conread position:
               
171-480
               

               
Cow position:
               
chr21:42209376-42209667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
171-484
               

               
Cow position:
               
chr21:24296497-24296801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
87, 18
               

               
Conread position:
               
171-506
               

               
Cow position:
               
chr21:8426711-8426379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
171-509
               

               
Cow position:
               
chr21:82327-82014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
171-510
               

               
Cow position:
               
chr21:41140446-41140784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
9, 14
               

               
Conread position:
               
172-299
               

               
Cow position:
               
chr21:35337658-35337786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
172-346
               

               
Cow position:
               
chr21:20193404-20193236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
172-417
               

               
Cow position:
               
chr21:20163975-20163734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
172-509
               

               
Cow position:
               
chr21:9477432-9477097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 18
               

               
Conread position:
               
172-509
               

               
Cow position:
               
chr21:20262080-20262398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 17
               

               
Conread position:
               
172-509
               

               
Cow position:
               
chr21:27810659-27810343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
80, 20
               

               
Conread position:
               
172-509
               

               
Cow position:
               
chr21:30222609-30222279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
173-313
               

               
Cow position:
               
chr21:20166049-20165903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
173-469
               

               
Cow position:
               
chr21:8950459-8950155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
173-470
               

               
Cow position:
               
chr21:14027332-14027028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
173-478
               

               
Cow position:
               
chr21:43388627-43388317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
173-487
               

               
Cow position:
               
chr21:18568371-18568685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
79, 19
               

               
Conread position:
               
173-507
               

               
Cow position:
               
chr21:47315-46974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
85, 94
               

               
Conread position:
               
173-509
               

               
Cow position:
               
chr21:16570155-16569836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
173-509
               

               
Cow position:
               
chr21:27229537-27229859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 16
               

               
Conread position:
               
174-455
               

               
Cow position:
               
chr21:38918468-38918192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
174-473
               

               
Cow position:
               
chr21:14126537-14126259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
174-508
               

               
Cow position:
               
chr21:37706145-37706479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
80, 156
               

               
Conread position:
               
174-509
               

               
Cow position:
               
chr21:938286-937969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 15
               

               
Conread position:
               
174-547
               

               
Cow position:
               
chr21:16915046-16914675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
70, 11
               

               
Conread position:
               
175-367
               

               
Cow position:
               
chr21:5218972-5218777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
175-382
               

               
Cow position:
               
chr21:30658125-30657930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
175-386
               

               
Cow position:
               
chr21:15012695-15012495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
175-433
               

               
Cow position:
               
chr21:36682590-36682332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 14
               

               
Conread position:
               
175-458
               

               
Cow position:
               
chr21:802059-802321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
175-487
               

               
Cow position:
               
chr21:742538-742245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
175-487
               

               
Cow position:
               
chr21:37299724-37299421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
175-508
               

               
Cow position:
               
chr21:25764880-25764574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 14
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr21:25345130-25344806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 117
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr21:32559107-32559424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr21:44825611-44825950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
175-521
               

               
Cow position:
               
chr21:44251575-44251913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
176-310
               

               
Cow position:
               
chr21:37479327-37479467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
176-311
               

               
Cow position:
               
chr21:13488818-13488677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
176-321
               

               
Cow position:
               
chr21:5789621-5789477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
176-321
               

               
Cow position:
               
chr21:18495480-18495336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
176-321
               

               
Cow position:
               
chr21:45376210-45376063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
176-324
               

               
Cow position:
               
chr21:17857028-17856877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
176-348
               

               
Cow position:
               
chr21:29418836-29418662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
70, 154
               

               
Conread position:
               
176-348
               

               
Cow position:
               
chr21:44732779-44732949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
6, 14
               

               
Conread position:
               
176-373
               

               
Cow position:
               
chr21:13883740-13883550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
176-389
               

               
Cow position:
               
chr21:11182812-11182606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
176-393
               

               
Cow position:
               
chr21:30938401-30938623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 115
               

               
Conread position:
               
176-396
               

               
Cow position:
               
chr21:25014777-25014980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
176-406
               

               
Cow position:
               
chr21:31279516-31279292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
176-411
               

               
Cow position:
               
chr21:27677746-27677513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
176-419
               

               
Cow position:
               
chr21:42145082-42144849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
176-421
               

               
Cow position:
               
chr21:6851428-6851196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
176-445
               

               
Cow position:
               
chr21:8430832-8431103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 154
               

               
Conread position:
               
176-453
               

               
Cow position:
               
chr21:674931-674675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
176-453
               

               
Cow position:
               
chr21:21616039-21615765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
176-463
               

               
Cow position:
               
chr21:13584789-13585073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
176-476
               

               
Cow position:
               
chr21:8545756-8546049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
176-478
               

               
Cow position:
               
chr21:13395844-13395564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
147, 13
               

               
Conread position:
               
176-486
               

               
Cow position:
               
chr21:45835127-45835444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
176-487
               

               
Cow position:
               
chr21:47363461-47363781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
176-498
               

               
Cow position:
               
chr21:4400056-4399749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
219, 12
               

               
Conread position:
               
176-503
               

               
Cow position:
               
chr21:18059696-18060016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
176-507
               

               
Cow position:
               
chr21:6713261-6713588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:641847-641518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:643583-643263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:6051768-6051442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:6834313-6833983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:10673373-10673064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:23587135-23586815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:24222254-24222603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:32339482-32339803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 11
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:34654333-34654012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:37480227-37479894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:40432727-40432384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:44214374-44214059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr21:46848869-46849191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
318, 13
               

               
Conread position:
               
176-510
               

               
Cow position:
               
chr21:3585101-3585429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
176-515
               

               
Cow position:
               
chr21:18155301-18155640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
176-571
               

               
Cow position:
               
chr21:8207024-8206649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
177-384
               

               
Cow position:
               
chr21:8506285-8506488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
177-384
               

               
Cow position:
               
chr21:8509173-8509376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
177-407
               

               
Cow position:
               
chr21:22851177-22850957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
177-565
               

               
Cow position:
               
chr21:18289939-18289545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
178-407
               

               
Cow position:
               
chr21:17252716-17252943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
178-509
               

               
Cow position:
               
chr21:19195898-19196228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 112
               

               
Conread position:
               
179-515
               

               
Cow position:
               
chr21:23673005-23672680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
180-346
               

               
Cow position:
               
chr21:7208515-7208674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
188-499
               

               
Cow position:
               
chr21:16152693-16152382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
62, 138
               

               
Conread position:
               
188-499
               

               
Cow position:
               
chr21:31159639-31159347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
188-506
               

               
Cow position:
               
chr21:37789749-37790065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
68, 137
               

               
Conread position:
               
188-550
               

               
Cow position:
               
chr21:22121755-22121421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
68, 106
               

               
Conread position:
               
189-319
               

               
Cow position:
               
chr21:16119910-16120044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
62, 23
               

               
Conread position:
               
189-321
               

               
Cow position:
               
chr21:29011724-29011858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
69, 105
               

               
Conread position:
               
189-321
               

               
Cow position:
               
chr21:32536643-32536511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
189-348
               

               
Cow position:
               
chr21:21159055-21158905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
189-348
               

               
Cow position:
               
chr21:37495692-37495852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
53, 144
               

               
Conread position:
               
189-350
               

               
Cow position:
               
chr21:7460857-7460699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 136
               

               
Conread position:
               
189-364
               

               
Cow position:
               
chr21:14516192-14516027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
189-404
               

               
Cow position:
               
chr21:39394001-39393786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
13, 140
               

               
Conread position:
               
189-407
               

               
Cow position:
               
chr21:46451720-46451917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
189-409
               

               
Cow position:
               
chr21:26018633-26018413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
63, 101
               

               
Conread position:
               
189-415
               

               
Cow position:
               
chr21:48334533-48334764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 145
               

               
Conread position:
               
189-423
               

               
Cow position:
               
chr21:11353316-11353080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 145
               

               
Conread position:
               
189-436
               

               
Cow position:
               
chr21:29658526-29658287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 127
               

               
Conread position:
               
189-445
               

               
Cow position:
               
chr21:44565477-44565721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
229, 21
               

               
Conread position:
               
189-446
               

               
Cow position:
               
chr21:46599610-46599357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
95, 70
               

               
Conread position:
               
189-447
               

               
Cow position:
               
chr21:7169939-7169683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
67, 135
               

               
Conread position:
               
189-454
               

               
Cow position:
               
chr21:47383297-47383572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
69, 47
               

               
Conread position:
               
189-464
               

               
Cow position:
               
chr21:7673365-7673100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 65
               

               
Conread position:
               
189-481
               

               
Cow position:
               
chr21:21907189-21907466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
189-482
               

               
Cow position:
               
chr21:10656849-10657140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
56, 93
               

               
Conread position:
               
189-482
               

               
Cow position:
               
chr21:20160930-20160640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
189-484
               

               
Cow position:
               
chr21:5238640-5238346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
171, 138
               

               
Conread position:
               
189-484
               

               
Cow position:
               
chr21:40589228-40589525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 139
               

               
Conread position:
               
189-498
               

               
Cow position:
               
chr21:47713755-47714057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
189-501
               

               
Cow position:
               
chr21:868667-868982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 143
               

               
Conread position:
               
189-503
               

               
Cow position:
               
chr21:10004631-10004945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 142
               

               
Conread position:
               
189-506
               

               
Cow position:
               
chr21:30835618-30835300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
68, 115
               

               
Conread position:
               
189-506
               

               
Cow position:
               
chr21:34010144-34010458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 89
               

               
Conread position:
               
189-506
               

               
Cow position:
               
chr21:47464867-47465183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 130
               

               
Conread position:
               
189-507
               

               
Cow position:
               
chr21:20260045-20260384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
57, 161
               

               
Conread position:
               
189-507
               

               
Cow position:
               
chr21:45970927-45971236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 134
               

               
Conread position:
               
189-508
               

               
Cow position:
               
chr21:957921-957608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 106
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:3236755-3236459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
219, 70
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:3763499-3763806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
300, 20
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:5898157-5898464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
304, 7
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:11644714-11645035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 139
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:12154377-12154072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
79, 117
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:12461717-12462035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 135
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:15543987-15544283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:22209991-22210309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
56, 147
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:23822404-23822102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
58, 110
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:24598895-24598596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 20
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:27863267-27863581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 90
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:28244719-28244404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 134
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:29069071-29069394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 142
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:33982562-33982870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 134
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:38901015-38900713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:39888474-39888813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 242
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:41974115-41974440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 150
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr21:42501304-42500972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
58, 140
               

               
Conread position:
               
189-510
               

               
Cow position:
               
chr21:17193496-17193819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
65, 142
               

               
Conread position:
               
189-510
               

               
Cow position:
               
chr21:22861244-22860933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 58
               

               
Conread position:
               
189-510
               

               
Cow position:
               
chr21:37014173-37014469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
306, 69
               

               
Conread position:
               
189-515
               

               
Cow position:
               
chr21:30848696-30849020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
210, 70
               

               
Conread position:
               
189-518
               

               
Cow position:
               
chr21:28919279-28919595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 116
               

               
Conread position:
               
189-526
               

               
Cow position:
               
chr21:19702982-19702641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 54
               

               
Conread position:
               
189-530
               

               
Cow position:
               
chr21:1511538-1511207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 131
               

               
Conread position:
               
189-547
               

               
Cow position:
               
chr21:24858568-24858215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 140
               

               
Conread position:
               
190-326
               

               
Cow position:
               
chr21:45537441-45537294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
190-328
               

               
Cow position:
               
chr21:430413-430286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
190-441
               

               
Cow position:
               
chr21:41287545-41287792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 135
               

               
Conread position:
               
190-447
               

               
Cow position:
               
chr21:19240627-19240880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
60, 38
               

               
Conread position:
               
190-473
               

               
Cow position:
               
chr21:6317434-6317709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 140
               

               
Conread position:
               
190-473
               

               
Cow position:
               
chr21:36763313-36763020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
68, 138
               

               
Conread position:
               
190-499
               

               
Cow position:
               
chr21:28237448-28237764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 144
               

               
Conread position:
               
190-507
               

               
Cow position:
               
chr21:10114082-10114395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 101
               

               
Conread position:
               
190-507
               

               
Cow position:
               
chr21:14760808-14760510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
299, 33
               

               
Conread position:
               
190-509
               

               
Cow position:
               
chr21:8351043-8351368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
65, 241
               

               
Conread position:
               
190-509
               

               
Cow position:
               
chr21:11456554-11456878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
190-509
               

               
Cow position:
               
chr21:34151827-34151515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
191-444
               

               
Cow position:
               
chr21:36508480-36508241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
191-470
               

               
Cow position:
               
chr21:38720499-38720226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
191-498
               

               
Cow position:
               
chr21:5464997-5464693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 138
               

               
Conread position:
               
191-506
               

               
Cow position:
               
chr21:11779288-11779592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
57, 130
               

               
Conread position:
               
191-509
               

               
Cow position:
               
chr21:29978515-29978821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
191-554
               

               
Cow position:
               
chr21:41156121-41155756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
56, 143
               

               
Conread position:
               
192-319
               

               
Cow position:
               
chr21:37110915-37110788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
192-508
               

               
Cow position:
               
chr21:7824941-7825241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
56, 137
               

               
Conread position:
               
192-509
               

               
Cow position:
               
chr21:3360767-3361077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
63, 134
               

               
Conread position:
               
192-509
               

               
Cow position:
               
chr21:10561336-10561649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr21:7394618-7394312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
193-509
               

               
Cow position:
               
chr21:28810027-28810332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
150, 54
               

               
Conread position:
               
193-547
               

               
Cow position:
               
chr21:10410471-10410125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 136
               

               
Conread position:
               
194-410
               

               
Cow position:
               
chr21:18493119-18493341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 93
               

               
Conread position:
               
194-507
               

               
Cow position:
               
chr21:28211424-28211138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
197-506
               

               
Cow position:
               
chr21:10292739-10292428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 134
               

               
Conread position:
               
199-404
               

               
Cow position:
               
chr21:40291507-40291708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
53, 127
               

               
Conread position:
               
199-461
               

               
Cow position:
               
chr21:828968-829227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 85
               

               
Conread position:
               
199-484
               

               
Cow position:
               
chr21:27521099-27521371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
58, 127
               

               
Conread position:
               
199-509
               

               
Cow position:
               
chr21:31253775-31253478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
201-473
               

               
Cow position:
               
chr21:20165880-20165612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 125
               

               
Conread position:
               
201-487
               

               
Cow position:
               
chr21:19059851-19060130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 94
               

               
Conread position:
               
201-509
               

               
Cow position:
               
chr21:9036541-9036230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
201-509
               

               
Cow position:
               
chr21:22856460-22856153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
202-508
               

               
Cow position:
               
chr21:13840567-13840258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
203-487
               

               
Cow position:
               
chr21:6624397-6624117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
203-508
               

               
Cow position:
               
chr21:19615410-19615109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 17
               

               
Conread position:
               
206-509
               

               
Cow position:
               
chr21:31691709-31691417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
207-320
               

               
Cow position:
               
chr21:14324394-14324507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 41
               

               
Conread position:
               
208-509
               

               
Cow position:
               
chr21:29213922-29214216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 125
               

               
Conread position:
               
212-321
               

               
Cow position:
               
chr21:28604315-28604206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 31
               

               
Conread position:
               
212-391
               

               
Cow position:
               
chr21:6735964-6736138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
212-446
               

               
Cow position:
               
chr21:28600113-28599887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
216-374
               

               
Cow position:
               
chr21:13043800-13043952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
216-394
               

               
Cow position:
               
chr21:30243460-30243633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
216-453
               

               
Cow position:
               
chr21:7768660-7768425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
216-483
               

               
Cow position:
               
chr21:17642764-17643021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
216-509
               

               
Cow position:
               
chr21:9416475-9416181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
216-509
               

               
Cow position:
               
chr21:19259041-19258764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
222-509
               

               
Cow position:
               
chr21:8549902-8549614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
222-509
               

               
Cow position:
               
chr21:18828093-18828371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
184, 22
               

               
Conread position:
               
223-394
               

               
Cow position:
               
chr21:40059243-40059076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
128, 99
               

               
Conread position:
               
223-528
               

               
Cow position:
               
chr21:21169275-21169577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
225-481
               

               
Cow position:
               
chr21:976924-977182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
28, 111
               

               
Conread position:
               
225-505
               

               
Cow position:
               
chr21:9990727-9990455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
225-508
               

               
Cow position:
               
chr21:45329738-45330012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
33, 98
               

               
Conread position:
               
228-507
               

               
Cow position:
               
chr21:10118774-10118494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 37
               

               
Conread position:
               
230-543
               

               
Cow position:
               
chr21:1591755-1591454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
235-509
               

               
Cow position:
               
chr21:30990089-30990335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
185, 17
               

               
Conread position:
               
237-509
               

               
Cow position:
               
chr21:4904768-4905034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 41
               

               
Conread position:
               
237-509
               

               
Cow position:
               
chr21:28989812-28989549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
7, 23
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chr21:17009178-17008916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
239-476
               

               
Cow position:
               
chr21:6388198-6387968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
239-509
               

               
Cow position:
               
chr21:38121301-38121036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
240-484
               

               
Cow position:
               
chr21:28429640-28429403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
240-509
               

               
Cow position:
               
chr21:33563199-33562948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
259, 82
               

               
Conread position:
               
243-447
               

               
Cow position:
               
chr21:9027510-9027309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
243-487
               

               
Cow position:
               
chr21:45473566-45473795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
244-371
               

               
Cow position:
               
chr21:30622830-30622710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-390
               

               
Cow position:
               
chr21:5486319-5486462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
244-391
               

               
Cow position:
               
chr21:5149392-5149247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
120, 75
               

               
Conread position:
               
244-443
               

               
Cow position:
               
chr21:35437295-35437478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
244-450
               

               
Cow position:
               
chr21:46132767-46132569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
244-453
               

               
Cow position:
               
chr21:30980386-30980587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-466
               

               
Cow position:
               
chr21:11057689-11057897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-467
               

               
Cow position:
               
chr21:38692388-38692180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
145, 41
               

               
Conread position:
               
244-470
               

               
Cow position:
               
chr21:10538063-10538276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-504
               

               
Cow position:
               
chr21:4280483-4280732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
244-505
               

               
Cow position:
               
chr21:33350933-33350685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-506
               

               
Cow position:
               
chr21:16696565-16696306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
244-508
               

               
Cow position:
               
chr21:36795795-36795536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
181, 79
               

               
Conread position:
               
244-508
               

               
Cow position:
               
chr21:42841405-42841662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
160, 78
               

               
Conread position:
               
244-508
               

               
Cow position:
               
chr21:45920869-45921122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr21:2658001-2657755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr21:18779784-18780038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
245, 79
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr21:18790374-18790625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
256, 73
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr21:25127798-25127536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr21:26245106-26244855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr21:30250012-30250255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr21:41579948-41579686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
163, 78
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr21:42007270-42007531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
239, 78
               

               
Conread position:
               
244-512
               

               
Cow position:
               
chr21:10514991-10514736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
104, 5
               

               
Conread position:
               
244-543
               

               
Cow position:
               
chr21:40168432-40168726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
244-543
               

               
Cow position:
               
chr21:42384701-42384413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
245-391
               

               
Cow position:
               
chr21:14228089-14228229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
245-434
               

               
Cow position:
               
chr21:19359985-19360167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
161, 77
               

               
Conread position:
               
245-462
               

               
Cow position:
               
chr21:47160410-47160199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
245-481
               

               
Cow position:
               
chr21:43259410-43259186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
245-499
               

               
Cow position:
               
chr21:29014367-29014615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
245-507
               

               
Cow position:
               
chr21:3818399-3818144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
222, 50
               

               
Conread position:
               
245-509
               

               
Cow position:
               
chr21:5392346-5392604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 23
               

               
Conread position:
               
245-509
               

               
Cow position:
               
chr21:10633448-10633706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
245-509
               

               
Cow position:
               
chr21:11360219-11359974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
245-509
               

               
Cow position:
               
chr21:33264035-33263784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
245-509
               

               
Cow position:
               
chr21:35569173-35569444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
78, 178
               

               
Conread position:
               
246-393
               

               
Cow position:
               
chr21:42465978-42465829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
246-509
               

               
Cow position:
               
chr21:2809975-2810227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
246-509
               

               
Cow position:
               
chr21:15976822-15976567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
243, 62
               

               
Conread position:
               
246-509
               

               
Cow position:
               
chr21:29485168-29484914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 79
               

               
Conread position:
               
247-443
               

               
Cow position:
               
chr21:7268695-7268882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
247-478
               

               
Cow position:
               
chr21:734778-734562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
247-504
               

               
Cow position:
               
chr21:46264359-46264112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr21:33910-33655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr21:39401771-39401529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
146, 28
               

               
Conread position:
               
247-512
               

               
Cow position:
               
chr21:18800345-18800596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
109, 75
               

               
Conread position:
               
247-543
               

               
Cow position:
               
chr21:7581716-7582002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
189, 75
               

               
Conread position:
               
249-386
               

               
Cow position:
               
chr21:41450568-41450438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
249-406
               

               
Cow position:
               
chr21:5341907-5342058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
249-483
               

               
Cow position:
               
chr21:40192119-40192341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
226, 15
               

               
Conread position:
               
249-508
               

               
Cow position:
               
chr21:36297681-36297426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
249-509
               

               
Cow position:
               
chr21:27568986-27569225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
152, 73
               

               
Conread position:
               
249-509
               

               
Cow position:
               
chr21:36910118-36909869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
251, 73
               

               
Conread position:
               
249-509
               

               
Cow position:
               
chr21:47763931-47764180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
249-510
               

               
Cow position:
               
chr21:23321891-23322146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
240, 74
               

               
Conread position:
               
249-512
               

               
Cow position:
               
chr21:24642699-24642451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
240, 41
               

               
Conread position:
               
250-401
               

               
Cow position:
               
chr21:31147750-31147893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
250-509
               

               
Cow position:
               
chr21:1059262-1059012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
250-509
               

               
Cow position:
               
chr21:22465376-22465132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
199, 30
               

               
Conread position:
               
250-509
               

               
Cow position:
               
chr21:27624884-27624644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
250-509
               

               
Cow position:
               
chr21:37344915-37345166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
233, 73
               

               
Conread position:
               
251-452
               

               
Cow position:
               
chr21:41046991-41046796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
155, 71
               

               
Conread position:
               
251-510
               

               
Cow position:
               
chr21:31662653-31662398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
251-528
               

               
Cow position:
               
chr21:30606911-30607172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
246, 34
               

               
Conread position:
               
252-509
               

               
Cow position:
               
chr21:25383210-25382948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
99, 70
               

               
Conread position:
               
252-510
               

               
Cow position:
               
chr21:10001259-10001008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
246, 76
               

               
Conread position:
               
254-410
               

               
Cow position:
               
chr21:44486565-44486415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
254-509
               

               
Cow position:
               
chr21:396049-395805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
254-509
               

               
Cow position:
               
chr21:13365524-13365273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 69
               

               
Conread position:
               
254-509
               

               
Cow position:
               
chr21:15611322-15611086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
150, 72
               

               
Conread position:
               
254-509
               

               
Cow position:
               
chr21:25628731-25628977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
165, 5
               

               
Conread position:
               
254-509
               

               
Cow position:
               
chr21:45850525-45850776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
255-509
               

               
Cow position:
               
chr21:12801568-12801812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
255-509
               

               
Cow position:
               
chr21:28626418-28626175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
255-547
               

               
Cow position:
               
chr21:28191213-28190932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 67
               

               
Conread position:
               
256-509
               

               
Cow position:
               
chr21:45262630-45262877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 67
               

               
Conread position:
               
257-446
               

               
Cow position:
               
chr21:7394110-7394287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
258-507
               

               
Cow position:
               
chr21:18844833-18845078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
20, 66
               

               
Conread position:
               
259-509
               

               
Cow position:
               
chr21:23800951-23801193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
259-547
               

               
Cow position:
               
chr21:12723327-12723060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
119, 8
               

               
Conread position:
               
259-547
               

               
Cow position:
               
chr21:33210365-33210102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
260-484
               

               
Cow position:
               
chr21:471850-471637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
261-504
               

               
Cow position:
               
chr21:42413922-42414160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
98, 61
               

               
Conread position:
               
261-509
               

               
Cow position:
               
chr21:31090260-31090485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
46, 59
               

               
Conread position:
               
262-507
               

               
Cow position:
               
chr21:8235388-8235615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chr21:15911571-15911334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
138, 61
               

               
Conread position:
               
265-520
               

               
Cow position:
               
chr21:297925-297676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
266-509
               

               
Cow position:
               
chr21:35354703-35354468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
37, 59
               

               
Conread position:
               
266-509
               

               
Cow position:
               
chr21:44515442-44515198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 155
               

               
Conread position:
               
268-509
               

               
Cow position:
               
chr21:724711-724951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
268-509
               

               
Cow position:
               
chr21:2679716-2679491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
150, 12
               

               
Conread position:
               
268-509
               

               
Cow position:
               
chr21:8125637-8125863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
231, 54
               

               
Conread position:
               
272-509
               

               
Cow position:
               
chr21:20193059-20192832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
8, 52
               

               
Conread position:
               
272-575
               

               
Cow position:
               
chr21:18850059-18850360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
6, 54
               

               
Conread position:
               
273-404
               

               
Cow position:
               
chr21:7088764-7088638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 50
               

               
Conread position:
               
274-451
               

               
Cow position:
               
chr21:20183233-20183064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
274-464
               

               
Cow position:
               
chr21:42540059-42540242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
274-509
               

               
Cow position:
               
chr21:9940028-9940259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
151, 10
               

               
Conread position:
               
275-509
               

               
Cow position:
               
chr21:20418521-20418750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
214, 48
               

               
Conread position:
               
275-509
               

               
Cow position:
               
chr21:45330446-45330669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
214, 48
               

               
Conread position:
               
276-555
               

               
Cow position:
               
chr21:18842077-18842343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
130, 47
               

               
Conread position:
               
276-571
               

               
Cow position:
               
chr21:35900001-35899712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
132, 42
               

               
Conread position:
               
285-509
               

               
Cow position:
               
chr21:41878620-41878406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
286-509
               

               
Cow position:
               
chr21:16187657-16187873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
287-442
               

               
Cow position:
               
chr21:10014562-10014726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
41, 140
               

               
Conread position:
               
291-509
               

               
Cow position:
               
chr21:34390830-34391040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
292-509
               

               
Cow position:
               
chr21:36789939-36789732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
295-509
               

               
Cow position:
               
chr21:43357115-43357326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
328-509
               

               
Cow position:
               
chr21:10601261-10601439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 127
               

               
Conread position:
               
329-487
               

               
Cow position:
               
chr21:19513978-19513822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
329-500
               

               
Cow position:
               
chr21:46144072-46143903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
329-508
               

               
Cow position:
               
chr21:18415165-18414986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
329-508
               

               
Cow position:
               
chr21:19363346-19363527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr21:6017738-6017551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr21:13488640-13488457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr21:17856657-17856482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr21:23149908-23150086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
77, 59
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr21:23192396-23192579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 78
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr21:33359928-33360099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
160, 20
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr21:38664752-38664573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
107, 126
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr21:46551990-46552171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 91
               

               
Conread position:
               
331-509
               

               
Cow position:
               
chr21:18041736-18041913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
92, 81
               

               
Conread position:
               
334-509
               

               
Cow position:
               
chr21:2904370-2904538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
334-509
               

               
Cow position:
               
chr21:4795334-4795162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
336-509
               

               
Cow position:
               
chr21:19210820-19210649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
153, 71
               

               
Conread position:
               
339-508
               

               
Cow position:
               
chr21:12339744-12339575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 138
               

               
Conread position:
               
341-473
               

               
Cow position:
               
chr21:8438723-8438853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
343-505
               

               
Cow position:
               
chr21:45867033-45866868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
356-509
               

               
Cow position:
               
chr21:16612711-16612560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
357-498
               

               
Cow position:
               
chr21:41598205-41598064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
357-506
               

               
Cow position:
               
chr21:12960812-12960961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
360-509
               

               
Cow position:
               
chr21:21077408-21077261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
361-509
               

               
Cow position:
               
chr21:27079755-27079904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
53, 98
               

               
Conread position:
               
388-510
               

               
Cow position:
               
chr21:12617194-12617071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 33
               
Show alignments to all cow chromosomes.