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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8006H03.3
        

               
Conread position:
               
130-457
               

               
Cow position:
               
chr29:21645561-21645246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
118, 62
               

               
Conread position:
               
135-400
               

               
Cow position:
               
chr29:742430-742673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
143-320
               

               
Cow position:
               
chr29:34274145-34274329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
80, 24
               

               
Conread position:
               
145-457
               

               
Cow position:
               
chr29:36952082-36952378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 49
               

               
Conread position:
               
146-366
               

               
Cow position:
               
chr29:40350853-40351065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
146-509
               

               
Cow position:
               
chr29:20910465-20910827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
147-315
               

               
Cow position:
               
chr29:38010672-38010501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 37
               

               
Conread position:
               
147-498
               

               
Cow position:
               
chr29:30441164-30440813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
147-501
               

               
Cow position:
               
chr29:18878256-18878616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
148-509
               

               
Cow position:
               
chr29:36220778-36220397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
16, 196
               

               
Conread position:
               
149-256
               

               
Cow position:
               
chr29:9924348-9924453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
150-372
               

               
Cow position:
               
chr29:26539455-26539239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 39
               

               
Conread position:
               
151-445
               

               
Cow position:
               
chr29:38979852-38980137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
37, 131
               

               
Conread position:
               
151-509
               

               
Cow position:
               
chr29:25092329-25091982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
154-470
               

               
Cow position:
               
chr29:15947391-15947080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
97, 176
               

               
Conread position:
               
154-509
               

               
Cow position:
               
chr29:39111103-39111445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 30
               

               
Conread position:
               
157-321
               

               
Cow position:
               
chr29:24605113-24604945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
158-386
               

               
Cow position:
               
chr29:19363921-19363701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
159-289
               

               
Cow position:
               
chr29:27640256-27640379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
159-504
               

               
Cow position:
               
chr29:17297357-17297006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 133
               

               
Conread position:
               
160-504
               

               
Cow position:
               
chr29:29057397-29057056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
23, 174
               

               
Conread position:
               
161-389
               

               
Cow position:
               
chr29:36781097-36781317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
161-402
               

               
Cow position:
               
chr29:1011380-1011606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
161-510
               

               
Cow position:
               
chr29:31489537-31489190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
161-543
               

               
Cow position:
               
chr29:41531066-41530688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 143
               

               
Conread position:
               
162-379
               

               
Cow position:
               
chr29:43088523-43088308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
28, 167
               

               
Conread position:
               
163-365
               

               
Cow position:
               
chr29:9622497-9622681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
163-436
               

               
Cow position:
               
chr29:30681493-30681769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
163-509
               

               
Cow position:
               
chr29:22777970-22778308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
163-509
               

               
Cow position:
               
chr29:28979305-28979613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
320, 26
               

               
Conread position:
               
165-321
               

               
Cow position:
               
chr29:40112589-40112431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
165-484
               

               
Cow position:
               
chr29:23389356-23389661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
166-298
               

               
Cow position:
               
chr29:31378294-31378164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
166-316
               

               
Cow position:
               
chr29:25669292-25669148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
166-319
               

               
Cow position:
               
chr29:17718824-17718968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
166-321
               

               
Cow position:
               
chr29:29296596-29296443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
166-321
               

               
Cow position:
               
chr29:44981424-44981577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
166-374
               

               
Cow position:
               
chr29:8190008-8190198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
166-386
               

               
Cow position:
               
chr29:32655883-32656102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
12, 26
               

               
Conread position:
               
166-391
               

               
Cow position:
               
chr29:9378845-9378622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
166-411
               

               
Cow position:
               
chr29:22720439-22720686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
166-446
               

               
Cow position:
               
chr29:18449928-18450202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
88, 130
               

               
Conread position:
               
166-465
               

               
Cow position:
               
chr29:19949514-19949215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
166-487
               

               
Cow position:
               
chr29:26275809-26275504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 27
               

               
Conread position:
               
166-503
               

               
Cow position:
               
chr29:35501456-35501775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
166-504
               

               
Cow position:
               
chr29:17222624-17222287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
89, 19
               

               
Conread position:
               
166-506
               

               
Cow position:
               
chr29:10839147-10838823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
166-507
               

               
Cow position:
               
chr29:24035200-24035531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr29:5893054-5892718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr29:7955780-7956114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr29:9709901-9709566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr29:11916029-11915690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr29:22162056-22162383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr29:31929194-31928851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr29:35084011-35084353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
166-509
               

               
Cow position:
               
chr29:36210361-36210032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 130
               

               
Conread position:
               
166-510
               

               
Cow position:
               
chr29:16657902-16657557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
22, 108
               

               
Conread position:
               
166-547
               

               
Cow position:
               
chr29:14112588-14112209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
166-547
               

               
Cow position:
               
chr29:35405581-35405959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
166-551
               

               
Cow position:
               
chr29:5408934-5409312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
167-385
               

               
Cow position:
               
chr29:8125149-8125368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
168-310
               

               
Cow position:
               
chr29:22652529-22652383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
168-349
               

               
Cow position:
               
chr29:31107668-31107493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
168-506
               

               
Cow position:
               
chr29:34745454-34745788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
168-509
               

               
Cow position:
               
chr29:17110159-17109838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
169-410
               

               
Cow position:
               
chr29:24187857-24188099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
170-310
               

               
Cow position:
               
chr29:21592902-21592765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
170-321
               

               
Cow position:
               
chr29:16561570-16561721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
50, 14
               

               
Conread position:
               
170-349
               

               
Cow position:
               
chr29:27929969-27929795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
170-395
               

               
Cow position:
               
chr29:7290974-7290757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
170-405
               

               
Cow position:
               
chr29:396606-396384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
170-439
               

               
Cow position:
               
chr29:43441303-43441555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
170-509
               

               
Cow position:
               
chr29:16309926-16309612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
171-296
               

               
Cow position:
               
chr29:14442885-14443011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
75, 18
               

               
Conread position:
               
171-366
               

               
Cow position:
               
chr29:4441001-4441195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
171-380
               

               
Cow position:
               
chr29:15798154-15797948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 18
               

               
Conread position:
               
171-406
               

               
Cow position:
               
chr29:28066683-28066461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
171-495
               

               
Cow position:
               
chr29:5046857-5046535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
7, 15
               

               
Conread position:
               
171-495
               

               
Cow position:
               
chr29:8862296-8862594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
171-506
               

               
Cow position:
               
chr29:21196449-21196778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
171-509
               

               
Cow position:
               
chr29:2056263-2055927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
171-509
               

               
Cow position:
               
chr29:22690430-22690093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
171-509
               

               
Cow position:
               
chr29:32963728-32963428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
172-432
               

               
Cow position:
               
chr29:23155437-23155174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
172-454
               

               
Cow position:
               
chr29:23220283-23220577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
20, 154
               

               
Conread position:
               
173-350
               

               
Cow position:
               
chr29:936404-936233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
173-374
               

               
Cow position:
               
chr29:36697958-36697759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
173-484
               

               
Cow position:
               
chr29:5520283-5520610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
173-501
               

               
Cow position:
               
chr29:40117766-40117446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 16
               

               
Conread position:
               
173-506
               

               
Cow position:
               
chr29:1325648-1325314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
173-509
               

               
Cow position:
               
chr29:4121057-4120713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
173-513
               

               
Cow position:
               
chr29:38440458-38440108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
174-321
               

               
Cow position:
               
chr29:22776275-22776128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
86, 7
               

               
Conread position:
               
174-350
               

               
Cow position:
               
chr29:39639040-39638870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
74, 15
               

               
Conread position:
               
174-397
               

               
Cow position:
               
chr29:29308382-29308593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
208, 15
               

               
Conread position:
               
174-509
               

               
Cow position:
               
chr29:14838607-14838937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
167, 15
               

               
Conread position:
               
174-519
               

               
Cow position:
               
chr29:28734847-28735186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
175-288
               

               
Cow position:
               
chr29:31835467-31835354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
175-320
               

               
Cow position:
               
chr29:5064963-5064825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
175-342
               

               
Cow position:
               
chr29:7414693-7414535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 14
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr29:32215903-32215713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
175-380
               

               
Cow position:
               
chr29:12890875-12890681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
175-408
               

               
Cow position:
               
chr29:36357327-36357097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
175-410
               

               
Cow position:
               
chr29:31982023-31981797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
175-453
               

               
Cow position:
               
chr29:22028762-22029032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 14
               

               
Conread position:
               
175-453
               

               
Cow position:
               
chr29:41112691-41112949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
175-456
               

               
Cow position:
               
chr29:22166888-22167158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
242, 14
               

               
Conread position:
               
175-464
               

               
Cow position:
               
chr29:16290924-16290645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
80, 57
               

               
Conread position:
               
175-464
               

               
Cow position:
               
chr29:20770543-20770258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
175-486
               

               
Cow position:
               
chr29:23874663-23874351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
70, 155
               

               
Conread position:
               
175-506
               

               
Cow position:
               
chr29:22613620-22613299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr29:10018769-10018444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
125, 84
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr29:23698169-23697845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
80, 14
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr29:35677340-35677680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
80, 115
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr29:37618509-37618176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 155
               

               
Conread position:
               
175-509
               

               
Cow position:
               
chr29:41811410-41811712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
176-298
               

               
Cow position:
               
chr29:659479-659354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
176-301
               

               
Cow position:
               
chr29:20529135-20529007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
176-310
               

               
Cow position:
               
chr29:31593959-31594086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
176-373
               

               
Cow position:
               
chr29:14577055-14576862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
176-394
               

               
Cow position:
               
chr29:19176717-19176931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
176-404
               

               
Cow position:
               
chr29:22734908-22735133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
176-418
               

               
Cow position:
               
chr29:42630315-42630079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
66, 16
               

               
Conread position:
               
176-445
               

               
Cow position:
               
chr29:29923378-29923642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
176-458
               

               
Cow position:
               
chr29:19250541-19250269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
176-468
               

               
Cow position:
               
chr29:7624363-7624087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
230, 12
               

               
Conread position:
               
176-470
               

               
Cow position:
               
chr29:16011473-16011757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 136
               

               
Conread position:
               
176-472
               

               
Cow position:
               
chr29:21666284-21665994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
176-473
               

               
Cow position:
               
chr29:27668456-27668757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
176-484
               

               
Cow position:
               
chr29:3685323-3685617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
107, 9
               

               
Conread position:
               
176-487
               

               
Cow position:
               
chr29:7310861-7310580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
176-498
               

               
Cow position:
               
chr29:12625800-12626098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
176-506
               

               
Cow position:
               
chr29:4874692-4875020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 12
               

               
Conread position:
               
176-508
               

               
Cow position:
               
chr29:36531064-36530738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr29:11434310-11433992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
318, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr29:19762461-19762146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr29:25814637-25814965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr29:28195335-28195644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
326, 13
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr29:35292286-35291960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 80
               

               
Conread position:
               
176-509
               

               
Cow position:
               
chr29:40891509-40891828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
176-510
               

               
Cow position:
               
chr29:1615125-1614790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
176-543
               

               
Cow position:
               
chr29:29769156-29769512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
177-310
               

               
Cow position:
               
chr29:33550976-33551105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 12
               

               
Conread position:
               
177-311
               

               
Cow position:
               
chr29:11887458-11887327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
177-321
               

               
Cow position:
               
chr29:24660874-24660734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
177-508
               

               
Cow position:
               
chr29:43328829-43328511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
233, 11
               

               
Conread position:
               
178-321
               

               
Cow position:
               
chr29:23678897-23678758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
178-506
               

               
Cow position:
               
chr29:40763500-40763805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
179-410
               

               
Cow position:
               
chr29:31651597-31651377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
179-509
               

               
Cow position:
               
chr29:42363824-42364144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
180-487
               

               
Cow position:
               
chr29:1008014-1007708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 106
               

               
Conread position:
               
180-507
               

               
Cow position:
               
chr29:40583979-40583665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
181-407
               

               
Cow position:
               
chr29:32197889-32197666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
79, 140
               

               
Conread position:
               
182-391
               

               
Cow position:
               
chr29:34359632-34359835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
70, 142
               

               
Conread position:
               
184-402
               

               
Cow position:
               
chr29:4423258-4423465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
186-521
               

               
Cow position:
               
chr29:34358789-34359122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 10
               

               
Conread position:
               
187-321
               

               
Cow position:
               
chr29:30206690-30206820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
188-299
               

               
Cow position:
               
chr29:28727012-28726898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
188-509
               

               
Cow position:
               
chr29:12680346-12680028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 143
               

               
Conread position:
               
188-509
               

               
Cow position:
               
chr29:24046186-24045860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
62, 110
               

               
Conread position:
               
189-304
               

               
Cow position:
               
chr29:570657-570773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
69, 47
               

               
Conread position:
               
189-315
               

               
Cow position:
               
chr29:44985448-44985327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
189-317
               

               
Cow position:
               
chr29:4023183-4023051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
189-317
               

               
Cow position:
               
chr29:22736541-22736416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
189-325
               

               
Cow position:
               
chr29:33143169-33143310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
189-345
               

               
Cow position:
               
chr29:10191858-10192009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 52
               

               
Conread position:
               
189-363
               

               
Cow position:
               
chr29:7443880-7444048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
189-370
               

               
Cow position:
               
chr29:23913210-23913387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 136
               

               
Conread position:
               
189-380
               

               
Cow position:
               
chr29:15796671-15796482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
189-384
               

               
Cow position:
               
chr29:19125517-19125314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 147
               

               
Conread position:
               
189-387
               

               
Cow position:
               
chr29:22729752-22729557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 137
               

               
Conread position:
               
189-405
               

               
Cow position:
               
chr29:26540353-26540569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
64, 139
               

               
Conread position:
               
189-406
               

               
Cow position:
               
chr29:3293130-3292918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
67, 92
               

               
Conread position:
               
189-407
               

               
Cow position:
               
chr29:9310790-9310569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
189-407
               

               
Cow position:
               
chr29:17804717-17804504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
68, 128
               

               
Conread position:
               
189-408
               

               
Cow position:
               
chr29:16279164-16278956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
68, 90
               

               
Conread position:
               
189-410
               

               
Cow position:
               
chr29:40791484-40791276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
189-411
               

               
Cow position:
               
chr29:5789202-5788995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
189-416
               

               
Cow position:
               
chr29:31934563-31934338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 136
               

               
Conread position:
               
189-446
               

               
Cow position:
               
chr29:32656623-32656364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
66, 142
               

               
Conread position:
               
189-464
               

               
Cow position:
               
chr29:2623293-2623567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
114, 91
               

               
Conread position:
               
189-477
               

               
Cow position:
               
chr29:8292726-8293014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 93
               

               
Conread position:
               
189-481
               

               
Cow position:
               
chr29:26779063-26778778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 134
               

               
Conread position:
               
189-493
               

               
Cow position:
               
chr29:5063330-5063032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 127
               

               
Conread position:
               
189-504
               

               
Cow position:
               
chr29:21443154-21443469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
189-506
               

               
Cow position:
               
chr29:732797-732492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 36
               

               
Conread position:
               
189-506
               

               
Cow position:
               
chr29:10058356-10058663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
189-507
               

               
Cow position:
               
chr29:6337838-6337532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
141, 45
               

               
Conread position:
               
189-508
               

               
Cow position:
               
chr29:28196833-28197133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr29:3502749-3502438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 70
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr29:10818273-10818565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr29:11667135-11666831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr29:17462592-17462915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr29:24952874-24952558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
81, 102
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr29:25737232-25737548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr29:31674818-31674500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
66, 136
               

               
Conread position:
               
189-509
               

               
Cow position:
               
chr29:34773562-34773864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 46
               

               
Conread position:
               
189-510
               

               
Cow position:
               
chr29:10653509-10653215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
189-543
               

               
Cow position:
               
chr29:22714523-22714885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 193
               

               
Conread position:
               
189-547
               

               
Cow position:
               
chr29:26259663-26259311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
171, 79
               

               
Conread position:
               
190-310
               

               
Cow position:
               
chr29:42875540-42875661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
190-320
               

               
Cow position:
               
chr29:7143485-7143345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
190-407
               

               
Cow position:
               
chr29:39038083-39038300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
57, 142
               

               
Conread position:
               
190-452
               

               
Cow position:
               
chr29:29324234-29324487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
60, 130
               

               
Conread position:
               
190-465
               

               
Cow position:
               
chr29:32894443-32894182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 55
               

               
Conread position:
               
190-467
               

               
Cow position:
               
chr29:28994042-28993772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
216, 143
               

               
Conread position:
               
190-484
               

               
Cow position:
               
chr29:34297385-34297676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
190-486
               

               
Cow position:
               
chr29:20243617-20243916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 67
               

               
Conread position:
               
190-498
               

               
Cow position:
               
chr29:26017314-26017620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
64, 137
               

               
Conread position:
               
190-509
               

               
Cow position:
               
chr29:2744083-2744402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 98
               

               
Conread position:
               
190-509
               

               
Cow position:
               
chr29:4085482-4085189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
293, 46
               

               
Conread position:
               
190-509
               

               
Cow position:
               
chr29:16609936-16609611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 104
               

               
Conread position:
               
191-324
               

               
Cow position:
               
chr29:1946730-1946862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
191-372
               

               
Cow position:
               
chr29:25288734-25288919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
191-407
               

               
Cow position:
               
chr29:4070805-4070597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
64, 133
               

               
Conread position:
               
191-443
               

               
Cow position:
               
chr29:31944053-31943800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
58, 123
               

               
Conread position:
               
191-445
               

               
Cow position:
               
chr29:44139060-44139312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
59, 128
               

               
Conread position:
               
191-509
               

               
Cow position:
               
chr29:4520517-4520205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 134
               

               
Conread position:
               
191-509
               

               
Cow position:
               
chr29:22068556-22068881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
64, 98
               

               
Conread position:
               
192-424
               

               
Cow position:
               
chr29:44991241-44991471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
192-436
               

               
Cow position:
               
chr29:43544421-43544659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 134
               

               
Conread position:
               
192-458
               

               
Cow position:
               
chr29:30548957-30548694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
192-484
               

               
Cow position:
               
chr29:25475117-25474815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
192-509
               

               
Cow position:
               
chr29:10456396-10456689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
192-509
               

               
Cow position:
               
chr29:31926133-31926420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
293, 52
               

               
Conread position:
               
193-459
               

               
Cow position:
               
chr29:18556850-18556585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
194-407
               

               
Cow position:
               
chr29:5769973-5769762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
198-370
               

               
Cow position:
               
chr29:11116485-11116655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 128
               

               
Conread position:
               
199-445
               

               
Cow position:
               
chr29:23825035-23825287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
199-451
               

               
Cow position:
               
chr29:23825839-23825596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
147, 51
               

               
Conread position:
               
199-469
               

               
Cow position:
               
chr29:44236619-44236361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
239, 48
               

               
Conread position:
               
199-509
               

               
Cow position:
               
chr29:17154939-17154637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
206, 59
               

               
Conread position:
               
199-509
               

               
Cow position:
               
chr29:38582147-38581845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
54, 131
               

               
Conread position:
               
199-511
               

               
Cow position:
               
chr29:43099572-43099877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
58, 42
               

               
Conread position:
               
200-321
               

               
Cow position:
               
chr29:36546606-36546733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
200-447
               

               
Cow position:
               
chr29:41223340-41223119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 105
               

               
Conread position:
               
200-509
               

               
Cow position:
               
chr29:27826681-27826396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
201-484
               

               
Cow position:
               
chr29:17168580-17168300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 58
               

               
Conread position:
               
201-509
               

               
Cow position:
               
chr29:16272919-16272595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
57, 130
               

               
Conread position:
               
201-509
               

               
Cow position:
               
chr29:25284293-25284592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
299, 125
               

               
Conread position:
               
203-509
               

               
Cow position:
               
chr29:4624824-4625126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 95
               

               
Conread position:
               
206-324
               

               
Cow position:
               
chr29:42977863-42977744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
54, 71
               

               
Conread position:
               
207-348
               

               
Cow position:
               
chr29:34688741-34688878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
49, 118
               

               
Conread position:
               
207-504
               

               
Cow position:
               
chr29:29795211-29795513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
207-509
               

               
Cow position:
               
chr29:3100096-3100388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 124
               

               
Conread position:
               
208-401
               

               
Cow position:
               
chr29:22723767-22723576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 119
               

               
Conread position:
               
209-508
               

               
Cow position:
               
chr29:19428823-19428529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
34, 85
               

               
Conread position:
               
209-509
               

               
Cow position:
               
chr29:25333300-25333591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
209-514
               

               
Cow position:
               
chr29:12025309-12025605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
40, 100
               

               
Conread position:
               
210-413
               

               
Cow position:
               
chr29:22032475-22032679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
211-445
               

               
Cow position:
               
chr29:32176833-32176613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
212-510
               

               
Cow position:
               
chr29:9718611-9718900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
216-503
               

               
Cow position:
               
chr29:24624407-24624126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
220-509
               

               
Cow position:
               
chr29:11647245-11646965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 103
               

               
Conread position:
               
222-509
               

               
Cow position:
               
chr29:4480025-4480302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
232-509
               

               
Cow position:
               
chr29:1557073-1556802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 92
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr29:356458-356195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr29:463514-463784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
233-509
               

               
Cow position:
               
chr29:15738201-15738471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
239-391
               

               
Cow position:
               
chr29:11527663-11527804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
239-509
               

               
Cow position:
               
chr29:11053727-11053990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
20, 85
               

               
Conread position:
               
241-509
               

               
Cow position:
               
chr29:37599091-37599338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 48
               

               
Conread position:
               
244-366
               

               
Cow position:
               
chr29:17022276-17022160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-410
               

               
Cow position:
               
chr29:683366-683524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 41
               

               
Conread position:
               
244-423
               

               
Cow position:
               
chr29:30918675-30918504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
244-438
               

               
Cow position:
               
chr29:21285485-21285300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
244-455
               

               
Cow position:
               
chr29:28840282-28840077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-463
               

               
Cow position:
               
chr29:40874138-40873924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
244-472
               

               
Cow position:
               
chr29:18085700-18085477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
244-473
               

               
Cow position:
               
chr29:2262869-2263091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
165, 78
               

               
Conread position:
               
244-481
               

               
Cow position:
               
chr29:40959722-40959949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
244-484
               

               
Cow position:
               
chr29:8926335-8926568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 78
               

               
Conread position:
               
244-497
               

               
Cow position:
               
chr29:26559120-26559358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-498
               

               
Cow position:
               
chr29:28775337-28775575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
244-506
               

               
Cow position:
               
chr29:19339127-19338861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
79, 172
               

               
Conread position:
               
244-507
               

               
Cow position:
               
chr29:6844506-6844759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
104, 78
               

               
Conread position:
               
244-507
               

               
Cow position:
               
chr29:40298894-40299140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
231, 78
               

               
Conread position:
               
244-508
               

               
Cow position:
               
chr29:32799585-32799841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr29:11397799-11398053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr29:12783837-12784087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr29:23243752-23244010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 81
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr29:40097088-40096830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
179, 78
               

               
Conread position:
               
244-509
               

               
Cow position:
               
chr29:45005503-45005755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
174, 78
               

               
Conread position:
               
244-512
               

               
Cow position:
               
chr29:24252357-24252106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
244-515
               

               
Cow position:
               
chr29:38581106-38580841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
244-542
               

               
Cow position:
               
chr29:13639240-13639530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
105, 79
               

               
Conread position:
               
245-423
               

               
Cow position:
               
chr29:34687960-34687787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
162, 77
               

               
Conread position:
               
245-446
               

               
Cow position:
               
chr29:38978656-38978462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
245-502
               

               
Cow position:
               
chr29:43251040-43251291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
245-508
               

               
Cow position:
               
chr29:6286036-6286288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
241, 78
               

               
Conread position:
               
246-487
               

               
Cow position:
               
chr29:847518-847749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
246-509
               

               
Cow position:
               
chr29:17409459-17409201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
243, 77
               

               
Conread position:
               
246-509
               

               
Cow position:
               
chr29:29314536-29314785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
247-452
               

               
Cow position:
               
chr29:5210614-5210413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
160, 75
               

               
Conread position:
               
247-458
               

               
Cow position:
               
chr29:13867086-13867291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
247-482
               

               
Cow position:
               
chr29:32290735-32290505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
247-503
               

               
Cow position:
               
chr29:22175804-22175563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr29:10156183-10156435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
163, 67
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr29:27589046-27588793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr29:28166099-28166343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
247-509
               

               
Cow position:
               
chr29:36217235-36216987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
248-484
               

               
Cow position:
               
chr29:6015247-6015017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
249-482
               

               
Cow position:
               
chr29:13373422-13373196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
95, 73
               

               
Conread position:
               
249-495
               

               
Cow position:
               
chr29:40994770-40995005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
249-498
               

               
Cow position:
               
chr29:13028561-13028319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
160, 73
               

               
Conread position:
               
249-509
               

               
Cow position:
               
chr29:86891-87148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
250-509
               

               
Cow position:
               
chr29:39567802-39567557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
251-459
               

               
Cow position:
               
chr29:22519008-22519210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
252-459
               

               
Cow position:
               
chr29:8004809-8005003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
252-507
               

               
Cow position:
               
chr29:4003010-4002768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
252-508
               

               
Cow position:
               
chr29:32210953-32211185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
252-509
               

               
Cow position:
               
chr29:29176499-29176745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
253-507
               

               
Cow position:
               
chr29:5186376-5186623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 70
               

               
Conread position:
               
254-498
               

               
Cow position:
               
chr29:22936387-22936152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
254-511
               

               
Cow position:
               
chr29:6217429-6217681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 121
               

               
Conread position:
               
254-575
               

               
Cow position:
               
chr29:9912290-9911977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
168, 5
               

               
Conread position:
               
255-509
               

               
Cow position:
               
chr29:43008969-43009212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
257-508
               

               
Cow position:
               
chr29:13372776-13372536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
257-509
               

               
Cow position:
               
chr29:20903177-20903414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
259-507
               

               
Cow position:
               
chr29:17607527-17607292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
259-509
               

               
Cow position:
               
chr29:10235027-10235259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
164, 8
               

               
Conread position:
               
259-509
               

               
Cow position:
               
chr29:13127009-13127252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
216, 71
               

               
Conread position:
               
260-509
               

               
Cow position:
               
chr29:26416460-26416230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
155, 7
               

               
Conread position:
               
262-480
               

               
Cow position:
               
chr29:27873709-27873503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
262-507
               

               
Cow position:
               
chr29:1229715-1229483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
145, 60
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chr29:26615612-26615852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 63
               

               
Conread position:
               
265-509
               

               
Cow position:
               
chr29:28446151-28446386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
170, 50
               

               
Conread position:
               
268-459
               

               
Cow position:
               
chr29:18012660-18012474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
141, 57
               

               
Conread position:
               
268-481
               

               
Cow position:
               
chr29:24578965-24578756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
148, 55
               

               
Conread position:
               
268-505
               

               
Cow position:
               
chr29:27329994-27329766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
269-509
               

               
Cow position:
               
chr29:5098665-5098890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
269-509
               

               
Cow position:
               
chr29:28868744-28868506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 54
               

               
Conread position:
               
270-543
               

               
Cow position:
               
chr29:2984990-2984723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
219, 53
               

               
Conread position:
               
273-509
               

               
Cow position:
               
chr29:23983858-23984089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
147, 50
               

               
Conread position:
               
285-509
               

               
Cow position:
               
chr29:11562698-11562485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
286-509
               

               
Cow position:
               
chr29:868859-868643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
199, 37
               

               
Conread position:
               
288-507
               

               
Cow position:
               
chr29:44682022-44682225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
291-509
               

               
Cow position:
               
chr29:29942648-29942863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
198, 32
               

               
Conread position:
               
295-507
               

               
Cow position:
               
chr29:40166319-40166118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
110, 28
               

               
Conread position:
               
301-509
               

               
Cow position:
               
chr29:26270143-26269937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
125, 112
               

               
Conread position:
               
308-509
               

               
Cow position:
               
chr29:1124725-1124525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
17, 98
               

               
Conread position:
               
328-509
               

               
Cow position:
               
chr29:699567-699749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
161, 85
               

               
Conread position:
               
329-471
               

               
Cow position:
               
chr29:33551516-33551659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr29:11135849-11136021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
329-509
               

               
Cow position:
               
chr29:24103494-24103675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
329-511
               

               
Cow position:
               
chr29:29975085-29974912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
332-509
               

               
Cow position:
               
chr29:42849269-42849093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
336-509
               

               
Cow position:
               
chr29:31594087-31594260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
67, 59
               

               
Conread position:
               
345-509
               

               
Cow position:
               
chr29:17301565-17301399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               
Show alignments to all cow chromosomes.