Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8006M12.5 |
| Conread position: | 33-1016 |
| Cow position: | chr14:3101531-3100543 (view UCSC Genome Browser custom track) |
| Alignm length: | 1003 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 120-1016 |
| Cow position: | chr14:25876214-25877117 (view UCSC Genome Browser custom track) |
| Alignm length: | 912 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 125-935 |
| Cow position: | chr14:25783411-25784222 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 334 |
| Conread position: | 125-1007 |
| Cow position: | chr14:25783747-25784637 (view UCSC Genome Browser custom track) |
| Alignm length: | 896 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 133 |
| Conread position: | 128-769 |
| Cow position: | chr14:25784086-25784727 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 141 |
| Conread position: | 128-853 |
| Cow position: | chr14:25794944-25794218 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 130-687 |
| Cow position: | chr14:25784171-25784729 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 79 |
| Conread position: | 131-750 |
| Cow position: | chr14:25794773-25794155 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 132-825 |
| Cow position: | chr14:25794856-25794162 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 136 |
| Conread position: | 134-853 |
| Cow position: | chr14:25783924-25784643 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 484, 476 |
| Conread position: | 134-1016 |
| Cow position: | chr14:25783504-25784394 (view UCSC Genome Browser custom track) |
| Alignm length: | 894 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 396 |
| Conread position: | 135-935 |
| Cow position: | chr14:25783841-25784642 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 148-1016 |
| Cow position: | chr14:25876913-25877789 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 106 |
| Conread position: | 152-1016 |
| Cow position: | chr14:25859447-25860318 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 156-1021 |
| Cow position: | chr14:25795336-25794464 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 157-439 |
| Cow position: | chr14:25836902-25837184 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-1013 |
| Cow position: | chr14:25859199-25860063 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 517 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 285, 297 |
| Conread position: | 157-1016 |
| Cow position: | chr14:25836314-25837181 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 159-781 |
| Cow position: | chr14:25836568-25837190 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 301 |
| Conread position: | 159-904 |
| Cow position: | chr14:25836064-25836809 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 430 |
| Conread position: | 159-906 |
| Cow position: | chr14:25859705-25860452 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 88 |
| Conread position: | 159-906 |
| Cow position: | chr14:25876756-25877503 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 159-940 |
| Cow position: | chr14:25794997-25794213 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 159-1007 |
| Cow position: | chr14:25783361-25784217 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 64 |
| Conread position: | 159-1013 |
| Cow position: | chr14:25795081-25794218 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 159-1016 |
| Cow position: | chr14:25876504-25877369 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 168-857 |
| Cow position: | chr14:25859294-25859983 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 413 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 283, 291 |
| Conread position: | 168-930 |
| Cow position: | chr14:3101226-3100467 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 463 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 118, 124 |
| Conread position: | 193-651 |
| Cow position: | chr14:3155377-3155834 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 198-1016 |
| Cow position: | chr14:25859828-25860654 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 82 |
| Conread position: | 204-1015 |
| Cow position: | chr14:25795372-25794553 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 66 |
| Conread position: | 207-782 |
| Cow position: | chr14:3156131-3156697 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 342 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 207-953 |
| Cow position: | chr14:3127957-3127215 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 402 |
| Conread position: | 207-1007 |
| Cow position: | chr14:25795453-25794645 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 210-679 |
| Cow position: | chr14:25910815-25911284 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 142, 156 |
| Conread position: | 212-603 |
| Cow position: | chr14:680881-681272 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 212-853 |
| Cow position: | chr14:3156052-3156684 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 383 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 212-854 |
| Cow position: | chr14:447575-448217 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 244 |
| Conread position: | 212-902 |
| Cow position: | chr14:3080356-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 418 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 140, 162 |
| Conread position: | 213-904 |
| Cow position: | chr14:25836286-25836977 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 214-704 |
| Cow position: | chr14:25836707-25837197 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 138 |
| Conread position: | 218-871 |
| Cow position: | chr14:25877151-25877804 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 383 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 409, 389 |
| Conread position: | 218-904 |
| Cow position: | chr14:25860016-25860702 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 472 |
| Conread position: | 218-904 |
| Cow position: | chr14:25895610-25896296 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 392 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 395, 391 |
| Conread position: | 218-935 |
| Cow position: | chr14:3080854-3080136 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 440 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 218-937 |
| Cow position: | chr14:3080434-3079713 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 435 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 237, 242 |
| Conread position: | 219-906 |
| Cow position: | chr14:3128113-3127426 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 410 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 152, 157 |
| Conread position: | 229-909 |
| Cow position: | chr14:25894947-25895629 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 404 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 229-1016 |
| Cow position: | chr14:25783345-25784142 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 232 |
| Conread position: | 238-931 |
| Cow position: | chr14:680319-681014 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 419 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 292, 309 |
| Conread position: | 243-906 |
| Cow position: | chr14:3080997-3080334 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 408 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 243-935 |
| Cow position: | chr14:3080493-3079800 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 420 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 301, 294 |
| Conread position: | 252-928 |
| Cow position: | chr14:3128164-3127486 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 197 |
| Conread position: | 273-909 |
| Cow position: | chr14:447552-448188 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 97 |
| Conread position: | 277-906 |
| Cow position: | chr14:3127971-3127342 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 367 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 83, 75 |
| Conread position: | 288-685 |
| Cow position: | chr14:3155387-3155784 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 145, 172 |
| Conread position: | 290-1016 |
| Cow position: | chr14:25783324-25784058 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 320 |
| Conread position: | 291-1016 |
| Cow position: | chr14:25836112-25836845 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 244 |
| Conread position: | 296-688 |
| Cow position: | chr14:680881-681273 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 290, 286 |
| Conread position: | 296-854 |
| Cow position: | chr14:680713-681271 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 341 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 56, 88 |
| Conread position: | 297-854 |
| Cow position: | chr14:25877314-25877871 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 343 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 153, 159 |
| Conread position: | 300-783 |
| Cow position: | chr14:3155972-3156455 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 314, 305 |
| Conread position: | 302-854 |
| Cow position: | chr14:25910743-25911291 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 149, 62 |
| Conread position: | 303-820 |
| Cow position: | chr14:25895863-25896380 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 211, 230 |
| Conread position: | 303-871 |
| Cow position: | chr14:25860185-25860753 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 344 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 148, 154 |
| Conread position: | 303-906 |
| Cow position: | chr14:3061412-3060809 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 355 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 136, 157 |
| Conread position: | 303-923 |
| Cow position: | chr14:3061580-3060958 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 371 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 134, 151 |
| Conread position: | 303-937 |
| Cow position: | chr14:680636-681272 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 376 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 241, 232 |
| Conread position: | 312-854 |
| Cow position: | chr14:3155900-3156442 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 274, 270 |
| Conread position: | 312-1022 |
| Cow position: | chr14:25836049-25836768 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 438, 445 |
| Conread position: | 326-1017 |
| Cow position: | chr14:3080998-3080299 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 431 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 363-820 |
| Cow position: | chr14:3155378-3155835 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 74, 93 |
| Conread position: | 365-935 |
| Cow position: | chr14:3155869-3156440 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 353 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 76, 98 |
| Conread position: | 368-854 |
| Cow position: | chr14:25859158-25859644 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 374-909 |
| Cow position: | chr14:25835943-25836478 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 384-923 |
| Cow position: | chr14:447579-448120 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 338 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 138, 157 |
| Conread position: | 387-946 |
| Cow position: | chr14:25910744-25911301 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 387-1016 |
| Cow position: | chr14:25895611-25896248 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 379 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 53, 65 |
| Conread position: | 417-940 |
| Cow position: | chr14:680666-681191 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 281, 272 |
| Conread position: | 454-909 |
| Cow position: | chr14:433871-434325 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 170, 5 |
| Conread position: | 530-853 |
| Cow position: | chr14:25795466-25795143 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 530-1016 |
| Cow position: | chr14:25783312-25783806 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 305 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 345, 325 |
Show alignments to all cow chromosomes.