Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8006M12.5 |
| Conread position: | 118-748 |
| Cow position: | chr19:20635656-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 223 |
| Conread position: | 125-827 |
| Cow position: | chr19:20678103-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 605, 0 |
| Conread position: | 127-938 |
| Cow position: | chr19:14960155-14959358 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 214 |
| Conread position: | 127-1016 |
| Cow position: | chr19:14940142-14941039 (view UCSC Genome Browser custom track) |
| Alignm length: | 906 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 69 |
| Conread position: | 127-1022 |
| Cow position: | chr19:20677601-20678504 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 602 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 128-770 |
| Cow position: | chr19:23649793-23650435 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 386 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 128-822 |
| Cow position: | chr19:14960404-14959714 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 128-1020 |
| Cow position: | chr19:23614091-23614991 (view UCSC Genome Browser custom track) |
| Alignm length: | 908 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 130-904 |
| Cow position: | chr19:14940060-14940835 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 134-1013 |
| Cow position: | chr19:20677776-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 555, 569 |
| Conread position: | 134-1016 |
| Cow position: | chr19:20677692-20678582 (view UCSC Genome Browser custom track) |
| Alignm length: | 893 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 144-904 |
| Cow position: | chr19:23613520-23614279 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 15 |
| Conread position: | 148-688 |
| Cow position: | chr19:23649897-23650437 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 335 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 292, 304 |
| Conread position: | 151-743 |
| Cow position: | chr19:20635539-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 122 |
| Conread position: | 151-1016 |
| Cow position: | chr19:23613947-23614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 7 |
| Conread position: | 156-781 |
| Cow position: | chr19:14940423-14941048 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 156-1015 |
| Cow position: | chr19:20677546-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 568, 549 |
| Conread position: | 157-1023 |
| Cow position: | chr19:20677463-20678337 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 460 |
| Conread position: | 159-724 |
| Cow position: | chr19:23614542-23615107 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 207 |
| Conread position: | 159-749 |
| Cow position: | chr19:43570286-43569702 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 6 |
| Conread position: | 159-770 |
| Cow position: | chr19:20635699-20635088 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 159-904 |
| Cow position: | chr19:20677969-20678714 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 114 |
| Conread position: | 159-909 |
| Cow position: | chr19:23596882-23597629 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 159-909 |
| Cow position: | chr19:23613870-23614620 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 209 |
| Conread position: | 159-1015 |
| Cow position: | chr19:23613702-23614566 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 49 |
| Conread position: | 159-1016 |
| Cow position: | chr19:23614206-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 110 |
| Conread position: | 166-523 |
| Cow position: | chr19:14948441-14948085 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 120, 41 |
| Conread position: | 166-1018 |
| Cow position: | chr19:14959710-14958867 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 510 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 78, 58 |
| Conread position: | 199-646 |
| Cow position: | chr19:14959268-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 204-853 |
| Cow position: | chr19:23614419-23615068 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 205-479 |
| Cow position: | chr19:14959100-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 205-1015 |
| Cow position: | chr19:23613412-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 136 |
| Conread position: | 206-905 |
| Cow position: | chr19:23649283-23649982 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 316 |
| Conread position: | 206-1014 |
| Cow position: | chr19:14960242-14959444 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 90 |
| Conread position: | 207-520 |
| Cow position: | chr19:14948317-14948004 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 207-825 |
| Cow position: | chr19:23597095-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 398 |
| Conread position: | 207-928 |
| Cow position: | chr19:14940054-14940777 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 403 |
| Conread position: | 207-935 |
| Cow position: | chr19:14959587-14958873 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 253 |
| Conread position: | 212-854 |
| Cow position: | chr19:14959498-14958871 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 393 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 153, 164 |
| Conread position: | 212-903 |
| Cow position: | chr19:23649625-23650316 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 371 |
| Conread position: | 212-929 |
| Cow position: | chr19:23613671-23614390 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 242 |
| Conread position: | 213-646 |
| Cow position: | chr19:23650046-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 218-992 |
| Cow position: | chr19:23649547-23650329 (view UCSC Genome Browser custom track) |
| Alignm length: | 790 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 399 |
| Conread position: | 229-935 |
| Cow position: | chr19:14939990-14940699 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 230-853 |
| Cow position: | chr19:43570379-43569764 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 249-1016 |
| Cow position: | chr19:20677387-20678162 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 447 |
| Conread position: | 258-853 |
| Cow position: | chr19:23597062-23597658 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 324 |
| Conread position: | 278-935 |
| Cow position: | chr19:23596832-23597488 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 204 |
| Conread position: | 279-854 |
| Cow position: | chr19:23649860-23650435 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 97 |
| Conread position: | 283-684 |
| Cow position: | chr19:14948492-14948092 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 135, 90 |
| Conread position: | 285-910 |
| Cow position: | chr19:20635659-20635032 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 240 |
| Conread position: | 290-937 |
| Cow position: | chr19:14960410-14959765 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 256 |
| Conread position: | 290-1007 |
| Cow position: | chr19:23649451-23650176 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 319 |
| Conread position: | 290-1083 |
| Cow position: | chr19:23613413-23614219 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 170 |
| Conread position: | 297-739 |
| Cow position: | chr19:14959254-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 235, 135 |
| Conread position: | 297-854 |
| Cow position: | chr19:43570394-43569847 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 350 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 163, 116 |
| Conread position: | 306-906 |
| Cow position: | chr19:20635720-20635120 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 20 |
| Conread position: | 306-1014 |
| Cow position: | chr19:20677360-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 309-928 |
| Cow position: | chr19:14939988-14940609 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 311-1015 |
| Cow position: | chr19:23613350-23614062 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 409 |
| Conread position: | 375-775 |
| Cow position: | chr19:14948484-14948085 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 244, 84 |
| Conread position: | 380-1014 |
| Cow position: | chr19:23649289-23649931 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 391 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 389-1015 |
| Cow position: | chr19:20677359-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 48 |
| Conread position: | 469-932 |
| Cow position: | chr19:14948472-14948014 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 283 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 118, 8 |
| Conread position: | 471-1014 |
| Cow position: | chr19:43570388-43569847 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 336 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 437, 110 |
| Conread position: | 482-1036 |
| Cow position: | chr19:23596869-23597429 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 105 |
| Conread position: | 540-1016 |
| Cow position: | chr19:14960412-14959930 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 562-1046 |
| Cow position: | chr19:23613349-23613847 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 303 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 587-1083 |
| Cow position: | chr19:14960449-14959942 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 632-1019 |
| Cow position: | chr19:20635646-20635251 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 264 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 144, 164 |
Show alignments to all cow chromosomes.