Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8006M12.5 |
| Conread position: | 1-1233 |
| Cow position: | chr22:14467761-14468978 (view UCSC Genome Browser custom track) |
| Alignm length: | 1242 |
| Alignm identity: | 899 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 187 |
| Conread position: | 2-909 |
| Cow position: | chr22:14441735-14442639 (view UCSC Genome Browser custom track) |
| Alignm length: | 910 |
| Alignm identity: | 669 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 664, 669 |
| Conread position: | 125-824 |
| Cow position: | chr22:46654163-46654863 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 416 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 125-1014 |
| Cow position: | chr22:14429712-14430609 (view UCSC Genome Browser custom track) |
| Alignm length: | 900 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 330 |
| Conread position: | 128-690 |
| Cow position: | chr22:12431167-12430605 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 341 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 158, 164 |
| Conread position: | 128-1016 |
| Cow position: | chr22:12431755-12430859 (view UCSC Genome Browser custom track) |
| Alignm length: | 901 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 142 |
| Conread position: | 131-826 |
| Cow position: | chr22:14430222-14430917 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 116 |
| Conread position: | 134-825 |
| Cow position: | chr22:12475978-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 135 |
| Conread position: | 134-825 |
| Cow position: | chr22:12499281-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 135 |
| Conread position: | 134-906 |
| Cow position: | chr22:12399601-12398829 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 448 |
| Conread position: | 145-855 |
| Cow position: | chr22:12431318-12430608 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 125 |
| Conread position: | 148-603 |
| Cow position: | chr22:12418938-12418483 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-1010 |
| Cow position: | chr22:12431819-12430949 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 199 |
| Conread position: | 151-857 |
| Cow position: | chr22:12385660-12384952 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 153-700 |
| Cow position: | chr22:14430496-14431036 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 128 |
| Conread position: | 156-685 |
| Cow position: | chr22:11640871-11641400 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 304 |
| Conread position: | 156-738 |
| Cow position: | chr22:12458343-12457761 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 351 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 291, 303 |
| Conread position: | 156-750 |
| Cow position: | chr22:14430331-14430925 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 195 |
| Conread position: | 156-909 |
| Cow position: | chr22:14430163-14430916 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-852 |
| Cow position: | chr22:12458510-12457815 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 681, 677 |
| Conread position: | 157-854 |
| Cow position: | chr22:12432566-12431869 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 90 |
| Conread position: | 157-1016 |
| Cow position: | chr22:14429996-14430863 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 112 |
| Conread position: | 158-1018 |
| Cow position: | chr22:12399745-12398877 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 158-1248 |
| Cow position: | chr22:14441975-14443057 (view UCSC Genome Browser custom track) |
| Alignm length: | 1095 |
| Alignm identity: | 770 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 341 |
| Conread position: | 159-397 |
| Cow position: | chr22:12385146-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-551 |
| Cow position: | chr22:12385314-12384922 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 159-687 |
| Cow position: | chr22:12399324-12398796 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-935 |
| Cow position: | chr22:12499138-12499915 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 110 |
| Conread position: | 159-940 |
| Cow position: | chr22:12476121-12475338 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 449 |
| Conread position: | 159-1013 |
| Cow position: | chr22:12399828-12398966 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 49 |
| Conread position: | 159-1015 |
| Cow position: | chr22:12432312-12431448 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 109 |
| Conread position: | 159-1015 |
| Cow position: | chr22:12498886-12499750 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 182 |
| Conread position: | 159-1015 |
| Cow position: | chr22:14429662-14430526 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 296 |
| Conread position: | 159-1015 |
| Cow position: | chr22:14429914-14430778 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 121 |
| Conread position: | 159-1151 |
| Cow position: | chr22:14430082-14431082 (view UCSC Genome Browser custom track) |
| Alignm length: | 1016 |
| Alignm identity: | 671 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 114 |
| Conread position: | 163-824 |
| Cow position: | chr22:11640794-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 277 |
| Conread position: | 166-821 |
| Cow position: | chr22:12458417-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 103 |
| Conread position: | 168-940 |
| Cow position: | chr22:46654038-46654812 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 112 |
| Conread position: | 186-1015 |
| Cow position: | chr22:12498830-12499666 (view UCSC Genome Browser custom track) |
| Alignm length: | 846 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 19 |
| Conread position: | 203-1007 |
| Cow position: | chr22:12476413-12475601 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 542, 534 |
| Conread position: | 204-1016 |
| Cow position: | chr22:12399615-12398795 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 255 |
| Conread position: | 205-649 |
| Cow position: | chr22:12385352-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 409, 404 |
| Conread position: | 205-853 |
| Cow position: | chr22:12399446-12398798 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 205-935 |
| Cow position: | chr22:12419318-12418570 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 437 |
| Conread position: | 205-1016 |
| Cow position: | chr22:12476159-12475340 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 377 |
| Conread position: | 207-659 |
| Cow position: | chr22:11666511-11666963 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 67 |
| Conread position: | 207-685 |
| Cow position: | chr22:11701165-11701643 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 157, 140 |
| Conread position: | 207-854 |
| Cow position: | chr22:11640670-11641317 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 207-909 |
| Cow position: | chr22:12419232-12418513 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 400 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 144, 476 |
| Conread position: | 207-1015 |
| Cow position: | chr22:12432432-12431616 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 513, 483 |
| Conread position: | 207-1016 |
| Cow position: | chr22:12476325-12475508 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 134 |
| Conread position: | 210-925 |
| Cow position: | chr22:12431423-12430704 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 212-736 |
| Cow position: | chr22:12418958-12418434 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 319 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 498, 477 |
| Conread position: | 212-1012 |
| Cow position: | chr22:12458623-12457815 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 397 |
| Conread position: | 212-1015 |
| Cow position: | chr22:12432007-12431196 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 696, 808 |
| Conread position: | 218-854 |
| Cow position: | chr22:11640765-11641401 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 219-909 |
| Cow position: | chr22:12499282-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 224-904 |
| Cow position: | chr22:14429643-14430321 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 191 |
| Conread position: | 224-909 |
| Cow position: | chr22:12475972-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 230-746 |
| Cow position: | chr22:11666450-11666965 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 314 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 140, 117 |
| Conread position: | 230-820 |
| Cow position: | chr22:11701104-11701694 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 366 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 133, 117 |
| Conread position: | 231-770 |
| Cow position: | chr22:12419024-12418484 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 242-854 |
| Cow position: | chr22:12544596-12545208 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 366 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 243-856 |
| Cow position: | chr22:12399906-12399299 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 243-1016 |
| Cow position: | chr22:11640622-11641403 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 65 |
| Conread position: | 252-1015 |
| Cow position: | chr22:46654038-46654809 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 376 |
| Conread position: | 287-1016 |
| Cow position: | chr22:12458632-12457895 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 495, 484 |
| Conread position: | 302-853 |
| Cow position: | chr22:46654004-46654555 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 305-1017 |
| Cow position: | chr22:14429640-14430360 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 315-854 |
| Cow position: | chr22:12419023-12418484 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 338 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 320-824 |
| Cow position: | chr22:11666456-11666960 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 117, 134 |
| Conread position: | 320-854 |
| Cow position: | chr22:11701110-11701644 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 330 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 294, 284 |
| Conread position: | 361-905 |
| Cow position: | chr22:46653979-46654523 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 397-1018 |
| Cow position: | chr22:12385666-12385035 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 376 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 203, 217 |
| Conread position: | 416-854 |
| Cow position: | chr22:11666468-11666906 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 117 |
| Conread position: | 417-905 |
| Cow position: | chr22:12544603-12545091 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 114, 127 |
| Conread position: | 475-937 |
| Cow position: | chr22:11666443-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 146, 132 |
| Conread position: | 481-1015 |
| Cow position: | chr22:11701103-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 324 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 140, 126 |
| Conread position: | 485-904 |
| Cow position: | chr22:12399838-12399419 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 563-1004 |
| Cow position: | chr22:12399923-12399479 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 83 |
| Conread position: | 577-1016 |
| Cow position: | chr22:46653939-46654390 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 282 |
Show alignments to all cow chromosomes.