Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8006M12.5 |
| Conread position: | 118-1014 |
| Cow position: | chr23:25625922-25626822 (view UCSC Genome Browser custom track) |
| Alignm length: | 913 |
| Alignm identity: | 535 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 125-603 |
| Cow position: | chr23:24535895-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 445, 0 |
| Conread position: | 128-607 |
| Cow position: | chr23:25698587-25698108 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 57, 77 |
| Conread position: | 128-909 |
| Cow position: | chr23:25626099-25626877 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 130-502 |
| Cow position: | chr23:24639706-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 6, 127 |
| Conread position: | 134-704 |
| Cow position: | chr23:25626441-25627008 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 85 |
| Conread position: | 135-854 |
| Cow position: | chr23:25626192-25626906 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 148-904 |
| Cow position: | chr23:24522563-24521805 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 455 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 290, 301 |
| Conread position: | 151-473 |
| Cow position: | chr23:24546986-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 116, 124 |
| Conread position: | 151-685 |
| Cow position: | chr23:24639476-24640010 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 156-503 |
| Cow position: | chr23:24626405-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 156-608 |
| Cow position: | chr23:24560541-24560090 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 425, 415 |
| Conread position: | 156-685 |
| Cow position: | chr23:24547233-24546704 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 113 |
| Conread position: | 157-581 |
| Cow position: | chr23:24626322-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 157-666 |
| Cow position: | chr23:24639566-24640075 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 157-770 |
| Cow position: | chr23:24536031-24535417 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 457 |
| Conread position: | 157-821 |
| Cow position: | chr23:24560792-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 555, 542 |
| Conread position: | 157-906 |
| Cow position: | chr23:24639230-24639979 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 158-910 |
| Cow position: | chr23:24639315-24640067 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 61 |
| Conread position: | 159-437 |
| Cow position: | chr23:24654049-24654327 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 199-770 |
| Cow position: | chr23:25698684-25698113 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 345 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 346, 330 |
| Conread position: | 203-569 |
| Cow position: | chr23:25626675-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 44 |
| Conread position: | 204-645 |
| Cow position: | chr23:25660296-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 279 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 205-802 |
| Cow position: | chr23:24522755-24522159 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 149 |
| Conread position: | 206-809 |
| Cow position: | chr23:24547267-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 207-579 |
| Cow position: | chr23:25724063-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 212-853 |
| Cow position: | chr23:24560821-24560180 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 395 |
| Conread position: | 224-649 |
| Cow position: | chr23:24626305-24626730 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 358 |
| Conread position: | 224-822 |
| Cow position: | chr23:25660148-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 237-770 |
| Cow position: | chr23:24536035-24535502 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 445 |
| Conread position: | 251-940 |
| Cow position: | chr23:24560866-24560175 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 359 |
| Conread position: | 252-579 |
| Cow position: | chr23:24654058-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 104, 89 |
| Conread position: | 280-750 |
| Cow position: | chr23:24626277-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 325 |
| Conread position: | 281-854 |
| Cow position: | chr23:24547276-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 71 |
| Conread position: | 289-857 |
| Cow position: | chr23:25698678-25698110 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 151, 170 |
| Conread position: | 290-854 |
| Cow position: | chr23:24522754-24522193 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 296-1015 |
| Cow position: | chr23:25626015-25626739 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 437 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 155, 142 |
| Conread position: | 298-1013 |
| Cow position: | chr23:24560903-24560180 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 58 |
| Conread position: | 302-844 |
| Cow position: | chr23:25626441-25626980 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 147 |
| Conread position: | 305-854 |
| Cow position: | chr23:24536051-24535502 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 389 |
| Conread position: | 305-865 |
| Cow position: | chr23:25660145-25660706 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 217 |
| Conread position: | 320-663 |
| Cow position: | chr23:24654042-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 335-827 |
| Cow position: | chr23:24626251-24626738 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 10 |
| Conread position: | 368-642 |
| Cow position: | chr23:24522004-24521730 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 234, 23 |
| Conread position: | 372-935 |
| Cow position: | chr23:25698679-25698115 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 350 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 380-725 |
| Cow position: | chr23:25724058-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 238, 230 |
| Conread position: | 380-1013 |
| Cow position: | chr23:25626015-25626653 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 458, 454 |
| Conread position: | 411-685 |
| Cow position: | chr23:24654049-24654323 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 121, 140 |
| Conread position: | 455-1025 |
| Cow position: | chr23:25660129-25660704 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 346 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 252, 20 |
| Conread position: | 457-1014 |
| Cow position: | chr23:24547268-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 458-909 |
| Cow position: | chr23:24535982-24535531 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 459-769 |
| Cow position: | chr23:25724063-25723753 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 459-1015 |
| Cow position: | chr23:24560826-24560262 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 452, 0 |
| Conread position: | 473-854 |
| Cow position: | chr23:24626302-24626683 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 252 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 141, 130 |
| Conread position: | 479-1016 |
| Cow position: | chr23:24560890-24560345 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 263, 258 |
| Conread position: | 483-1016 |
| Cow position: | chr23:24522811-24522275 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 330 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 128, 21 |
| Conread position: | 488-826 |
| Cow position: | chr23:24654042-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 205, 226 |
| Conread position: | 527-1017 |
| Cow position: | chr23:24547282-24546784 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 164 |
| Conread position: | 554-854 |
| Cow position: | chr23:24654024-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 564-940 |
| Cow position: | chr23:24626309-24626687 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 579-1007 |
| Cow position: | chr23:24536029-24535593 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 31 |
| Conread position: | 625-906 |
| Cow position: | chr23:25724065-25723784 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 117, 112 |
| Conread position: | 711-928 |
| Cow position: | chr23:25724063-25723844 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 200, 0 |
Show alignments to all cow chromosomes.